FF:10494-107B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005932 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007937;DRR008809;DRZ000234;DRZ001619;DRZ011584;DRZ012969 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0002078,CL:0000150,CL:0000163,CL:0000215,CL:0000174,CL:0000255,CL:0000077,CL:0002097 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0102219,FF:0102424 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!1.87!151.61!C11orf9;;chr15:83953397..83953425,-!p1@BNC1!1.76!65.19!BNC1;;chr6:19837592..19837621,+!p1@ID4!1.73!305.36!ID4;;chr18:19749541..19749557,+!p1@GATA6!1.63!126.52!GATA6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.60!38.81!SEBOX;;chr8:37963466..37963506,+!p3@ASH2L!1.59!46.53!ASH2L;;chr19:45260775..45260838,+!p5@BCL3!1.57!46.75!BCL3;;chr11:32457075..32457095,-!p1@WT1!1.57!36.24!WT1;;chr6:10412392..10412409,-!p4@TFAP2A!1.49!33.88!TFAP2A;;chr8:55370487..55370503,+!p1@SOX17!1.43!25.95!SOX17;;chr6:85474299..85474324,-!p1@TBX18!1.42!44.39!TBX18;;chr17:46682321..46682362,-!p1@HOXB6!1.39!23.80!HOXB6;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.39!23.37!SEBOX;;chr6:126135900..126135924,+!p22@NCOA7!1.37!22.30!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.34!34.74!TFAP2A;;chr7:63505799..63505904,+!p1@ZNF727!1.33!20.37!ZNF727;;chr2:185463247..185463263,+!p1@ZNF804A!1.31!33.88!ZNF804A;;chr6:126240380..126240430,+!p2@NCOA7!1.26!43.75!NCOA7;;chr11:16627528..16627550,-!p7@SOX6!1.26!17.37!SOX6;;chr12:8186270..8186292,+!p3@FOXJ2!1.23!15.87!FOXJ2;;chr8:37963407..37963454,+!p2@ASH2L!1.20!44.17!ASH2L;;chr19:49864746..49864780,-!p2@TEAD2!1.20!20.37!TEAD2;;chr6:10415276..10415341,-!p2@TFAP2A!1.20!18.01!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.58!IRX2;;chr3:128206762..128206781,-!p2@GATA2!1.18!87.49!GATA2;;chr7:27196267..27196311,-!p1@HOXA7!1.17!13.72!HOXA7;;chr8:73921136..73921151,+!p2@TERF1!1.15!19.94!TERF1;;chr17:7493405..7493419,-!p1@SOX15!1.14!12.87!SOX15;;chr3:170076314..170076334,+!p2@SKIL!1.12!15.87!SKIL;;chr22:41763452..41763466,+!p2@TEF!1.12!12.22!TEF;;chr6:85473156..85473210,-!p2@TBX18!1.11!14.37!TBX18;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.31!ZFPM2;;chr2:172967621..172967637,-!p1@DLX2!1.05!27.66!DLX2;;chr17:46688334..46688385,-!p1@HOXB7!1.05!14.80!HOXB7;;chr7:77428149..77428220,+!p1@PHTF2!1.04!100.79!PHTF2;;chr19:12203100..12203132,+!p1@ZNF788!1.03!19.94!ZNF788;;chr7:97840743..97840786,+!p1@BHLHA15!1.03!9.65!BHLHA15;;chr3:141747459..141747475,-!p1@TFDP2!1.02!79.34!TFDP2;;chr11:16629182..16629201,-!p10@SOX6!1.02!9.44!SOX6;;chr20:21494684..21494708,-!p1@NKX2-2!1.01!9.22!NKX2-2;;chr18:19749386..19749404,+!p2@GATA6!1.00!12.87!GATA6;;chr12:54393880..54393962,+!p1@HOXC9!1.00!9.01!HOXC9;;chr2:5832508..5832524,+!p1@SOX11!1.00!9.01!SOX11;;chr17:7492684..7492778,-!p2@SOX15!0.99!19.09!SOX15;;chr4:87857474..87857489,+!p7@AFF1!0.99!15.65!AFF1;;chr8:11561684..11561751,+!p1@GATA4!0.96!8.15!GATA4;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.46!NR2F1;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.52!EPAS1;;chr7:1577899..1577943,+!p3@MAFK!0.95!7.93!MAFK;;chr16:67881588..67881612,-!p2@CENPT!0.93!10.51!CENPT;;chr18:6414884..6414942,-!p1@L3MBTL4!0.93!9.44!L3MBTL4;;chr11:16629205..16629216,-!p16@SOX6!0.93!7.51!SOX6;;chr4:87928142..87928165,+!p5@AFF1!0.92!26.16!AFF1;;chr19:20844346..20844351,-!p2@ZNF626!0.92!9.22!ZNF626;;chr18:45663490..45663528,-!p2@ZBTB7C!0.92!7.29!ZBTB7C;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.22!NCOA7;;chr11:32457413..32457431,-!p2@WT1!0.91!7.08!WT1;;chr2:16080659..16080685,+!p1@MYCN!0.91!7.08!MYCN;;chr11:120107344..120107351,+!p1@POU2F3!0.90!8.58!POU2F3;;chr11:16629369..16629392,-!p5@SOX6!0.90!6.86!SOX6;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.86!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.90!6.86!ZNF323;;chr2:25475094..25475112,-!p3@DNMT3A!0.90!6.86!DNMT3A;;chr18:19749517..19749531,+!p3@GATA6!0.89!12.44!GATA6;;chr12:80084167..80084197,-!p5@PAWR!0.88!16.08!PAWR;;chr8:106330696..106330719,+!p2@ZFPM2!0.88!8.58!ZFPM2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.88!6.65!SEBOX;;chr19:50432453..50432468,+!p1@ATF5!0.87!378.70!ATF5;;chr13:73633131..73633149,+!p1@KLF5!0.87!73.12!KLF5;;chr6:126240356..126240379,+!p7@NCOA7!0.87!7.93!NCOA7;;chr19:54058073..54058088,+!p1@ZNF331!0.87!6.43!ZNF331;;chr20:21494654..21494678,-!p2@NKX2-2!0.86!6.22!NKX2-2;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.22!HOXA3;;chr9:100615499..100615519,+!p1@FOXE1!0.86!6.22!FOXE1;;chr20:42295745..42295765,+!p1@MYBL2!0.85!105.51!MYBL2;;chr6:168227611..168227624,+!p2@MLLT4!0.85!9.01!MLLT4;;chr3:114343768..114343822,-!p1@ZBTB20!0.84!27.66!ZBTB20;;chr6:168227552..168227609,+!p1@MLLT4!0.83!50.61!MLLT4;;chr12:80084737..80084763,-!p3@PAWR!0.83!22.95!PAWR;;chr3:141747441..141747452,-!p4@TFDP2!0.83!8.36!TFDP2;;chr3:128207349..128207386,-!p3@GATA2!0.83!5.79!GATA2;;chr6:10415484..10415508,-!p3@TFAP2A!0.83!5.79!TFAP2A;;chr21:38071430..38071456,+!p1@SIM2!0.83!5.79!SIM2;;chr9:14314476..14314487,-!p9@NFIB!0.83!5.79!NFIB;;chr14:21566731..21566836,-!p1@ZNF219!0.82!65.19!ZNF219;;chr20:50721803..50721857,-!p2@ZFP64!0.82!9.22!ZFP64;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.58!KDM5D;;chr14:38064429..38064486,-!p1@FOXA1!0.82!5.58!FOXA1;;chr7:64838786..64838809,+!p2@ZNF92!0.81!33.24!ZNF92;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.09!ZNF467;;chr5:134369905..134369972,-!p1@PITX1!0.79!8.15!PITX1;;chr6:85474198..85474212,-!p3@TBX18!0.79!5.15!TBX18;;chr11:32457103..32457123,-!p3@WT1!0.7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KX3-1;;chr11:9482521..9482533,+!p2@ZNF143!0.24!2.14!ZNF143;;chr1:235383681..235383700,-!p2@ARID4B!0.24!1.93!ARID4B;;chr19:54024251..54024305,+!p4@ZNF331!0.24!1.72!ZNF331;;chr1:203764633..203764674,+!p2@ZC3H11A!0.24!1.72!ZC3H11A;;chr7:86782094..86782108,+!p5@DMTF1!0.24!1.72!DMTF1;;chr12:80085061..80085119,-!p6@PAWR!0.24!1.72!PAWR;;chr14:21566882..21566898,-!p3@ZNF219!0.24!1.50!ZNF219;;chr3:178789993..178790049,-!p5@ZMAT3!0.24!1.50!ZMAT3;;chr5:43067583..43067606,+!p7@ZNF131!0.24!1.50!ZNF131;;chr11:67007611..67007622,+!p6@KDM2A!0.24!1.29!KDM2A;;chr21:36260773..36260804,-!p7@RUNX1!0.24!1.29!RUNX1;;chr2:46602901..46602926,+!p7@EPAS1!0.24!1.29!EPAS1;;chr4:146402795..146402816,+!p7@SMAD1!0.24!1.29!SMAD1;;chr3:37217344..37217370,-!p5@LRRFIP2!0.24!1.07!LRRFIP2;;chr4:103422232..103422241,+!p6@NFKB1!0.24!1.07!NFKB1;;chr14:58817788..58817805,+!p5@ARID4A!0.24!1.07!ARID4A;;chr5:150284461..150284481,-!p4@ZNF300!0.24!1.07!ZNF300;;chr20:46130846..46130869,+!p5@NCOA3!0.24!0.86!NCOA3;;chr19:42759266..42759290,-!p1@ERF!0.23!48.25!ERF;;chr7:108210048..108210169,-!p1@THAP5,p2@PNPLA8!0.23!46.53!THAP5;;chr20:46130619..46130664,+!p1@NCOA3!0.23!41.17!NCOA3;;chr19:6279932..6280000,-!p1@MLLT1!0.23!38.81!MLLT1;;chr7:102985160..102985273,-!p1@DNAJC2!0.23!38.17!DNAJC2;;chr12:77459306..77459365,-!p1@E2F7!0.23!18.66!E2F7;;chr16:89284104..89284150,+!p1@ZNF778!0.23!10.29!ZNF778;;chr7:150974206..150974255,-!p1@SMARCD3!0.23!9.01!SMARCD3;;chr11:62368696..62368759,-!p4@MTA2!0.23!8.79!MTA2;;chr14:74226747..74226779,-!p3@C14orf43!0.23!7.93!C14orf43;;chr19:58258202..58258226,+!p3@ZNF776!0.23!6.65!ZNF776;;chr19:15543565..15543579,-!p2@WIZ!0.23!6.00!WIZ;;chr21:27107465..27107557,+!p3@GABPA!0.23!4.93!GABPA;;chr6:35227282..35227330,+!p2@ZNF76!0.23!4.93!ZNF76;;chr19:23870007..23870022,-!p2@ZNF675!0.23!4.29!ZNF675;;chr7:74072135..74072171,+!p2@GTF2I!0.23!4.07!GTF2I;;chr1:161736140..161736151,+!p3@ATF6!0.23!4.07!ATF6;;chr8:123794102..123794160,+!p3@ZHX2!0.23!3.43!ZHX2;;chr18:3450293..3450304,+!p4@TGIF1!0.23!3.00!TGIF1;;chr18:51750928..51750942,-!p4@MBD2!0.23!3.00!MBD2;;chr2:121493425..121493474,+!p1@GLI2!0.23!2.57!GLI2;;chrX:101975643..101975683,+!p1@BHLHB9!0.23!2.57!BHLHB9;;chr1:42501569..42501614,-!p1@HIVEP3!0.23!2.36!HIVEP3;;chr19:24097706..24097731,+!p2@ZNF726!0.23!2.14!ZNF726;;chr1:43148625..43148710,+!p3@YBX1!0.23!1.93!YBX1;;chr16:1429674..1429703,-!p3@UNKL!0.23!1.72!UNKL;;chr2:231084723..231084734,-!p4@SP110!0.23!1.72!SP110;;chr16:30569604..30569629,-!p3@ZNF764!0.23!1.50!ZNF764;;chr3:101395919..101395930,-!p4@ZBTB11!0.23!1.29!ZBTB11;;chr11:64764435..64764449,-!p1@BATF2!0.23!1.29!BATF2;;chr14:74253948..74253964,-!p9@C14orf43!0.23!1.07!C14orf43;;chr17:38465441..38465481,+!p6@RARA!0.23!1.07!RARA;;chr1:6684918..6684936,+!p2@THAP3!0.23!1.07!THAP3;;chrX:129244499..129244506,-!p7@ELF4!0.23!1.07!ELF4;;chr18:3447617..3447633,+!p20@TGIF1!0.23!0.86!TGIF1;;chr18:3452133..3452150,+!p19@TGIF1!0.23!0.86!TGIF1;;chr19:19932513..19932569,-!p1@ZNF506!0.22!27.88!ZNF506;;chr19:21203451..21203475,+!p1@ZNF430!0.22!14.58!ZNF430;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.22!13.94!ZNF576;;chr5:142784003..142784065,-!p2@NR3C1!0.22!11.79!NR3C1;;chr1:227751231..227751273,+!p1@ZNF678!0.22!8.79!ZNF678;;chr12:46123464..46123512,+!p1@ARID2!0.22!7.93!ARID2;;chr6:7107999..7108031,+!p2@RREB1!0.22!7.29!RREB1;;chr3:129158854..129158883,-!p3@MBD4!0.22!6.86!MBD4;;chr19:36545128..36545203,-!p1@THAP8!0.22!6.22!THAP8;;chr3:18466787..18466839,-!p1@SATB1!0.22!6.00!SATB1;;chrX:83757450..83757485,-!p1@HDX!0.22!5.79!HDX;;chr9:130954041..130954121,-!p2@CIZ1!0.22!5.79!CIZ1;;chr19:37569314..37569381,+!p1@ZNF420!0.22!4.72!ZNF420;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.22!3.65!ZKSCAN1;; | |expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!1.87!151.61!C11orf9;;chr15:83953397..83953425,-!p1@BNC1!1.76!65.19!BNC1;;chr6:19837592..19837621,+!p1@ID4!1.73!305.36!ID4;;chr18:19749541..19749557,+!p1@GATA6!1.63!126.52!GATA6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.60!38.81!SEBOX;;chr8:37963466..37963506,+!p3@ASH2L!1.59!46.53!ASH2L;;chr19:45260775..45260838,+!p5@BCL3!1.57!46.75!BCL3;;chr11:32457075..32457095,-!p1@WT1!1.57!36.24!WT1;;chr6:10412392..10412409,-!p4@TFAP2A!1.49!33.88!TFAP2A;;chr8:55370487..55370503,+!p1@SOX17!1.43!25.95!SOX17;;chr6:85474299..85474324,-!p1@TBX18!1.42!44.39!TBX18;;chr17:46682321..46682362,-!p1@HOXB6!1.39!23.80!HOXB6;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.39!23.37!SEBOX;;chr6:126135900..126135924,+!p22@NCOA7!1.37!22.30!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.34!34.74!TFAP2A;;chr7:63505799..63505904,+!p1@ZNF727!1.33!20.37!ZNF727;;chr2:185463247..185463263,+!p1@ZNF804A!1.31!33.88!ZNF804A;;chr6:126240380..126240430,+!p2@NCOA7!1.26!43.75!NCOA7;;chr11:16627528..16627550,-!p7@SOX6!1.26!17.37!SOX6;;chr12:8186270..8186292,+!p3@FOXJ2!1.23!15.87!FOXJ2;;chr8:37963407..37963454,+!p2@ASH2L!1.20!44.17!ASH2L;;chr19:49864746..49864780,-!p2@TEAD2!1.20!20.37!TEAD2;;chr6:10415276..10415341,-!p2@TFAP2A!1.20!18.01!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.58!IRX2;;chr3:128206762..128206781,-!p2@GATA2!1.18!87.49!GATA2;;chr7:27196267..27196311,-!p1@HOXA7!1.17!13.72!HOXA7;;chr8:73921136..73921151,+!p2@TERF1!1.15!19.94!TERF1;;chr17:7493405..7493419,-!p1@SOX15!1.14!12.87!SOX15;;chr3:170076314..170076334,+!p2@SKIL!1.12!15.87!SKIL;;chr22:41763452..41763466,+!p2@TEF!1.12!12.22!TEF;;chr6:85473156..85473210,-!p2@TBX18!1.11!14.37!TBX18;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.31!ZFPM2;;chr2:172967621..172967637,-!p1@DLX2!1.05!27.66!DLX2;;chr17:46688334..46688385,-!p1@HOXB7!1.05!14.80!HOXB7;;chr7:77428149..77428220,+!p1@PHTF2!1.04!100.79!PHTF2;;chr19:12203100..12203132,+!p1@ZNF788!1.03!19.94!ZNF788;;chr7:97840743..97840786,+!p1@BHLHA15!1.03!9.65!BHLHA15;;chr3:141747459..141747475,-!p1@TFDP2!1.02!79.34!TFDP2;;chr11:16629182..16629201,-!p10@SOX6!1.02!9.44!SOX6;;chr20:21494684..21494708,-!p1@NKX2-2!1.01!9.22!NKX2-2;;chr18:19749386..19749404,+!p2@GATA6!1.00!12.87!GATA6;;chr12:54393880..54393962,+!p1@HOXC9!1.00!9.01!HOXC9;;chr2:5832508..5832524,+!p1@SOX11!1.00!9.01!SOX11;;chr17:7492684..7492778,-!p2@SOX15!0.99!19.09!SOX15;;chr4:87857474..87857489,+!p7@AFF1!0.99!15.65!AFF1;;chr8:11561684..11561751,+!p1@GATA4!0.96!8.15!GATA4;;chr5:92918919..92918942,+!p1@NR2F1!0.95!36.46!NR2F1;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.52!EPAS1;;chr7:1577899..1577943,+!p3@MAFK!0.95!7.93!MAFK;;chr16:67881588..67881612,-!p2@CENPT!0.93!10.51!CENPT;;chr18:6414884..6414942,-!p1@L3MBTL4!0.93!9.44!L3MBTL4;;chr11:16629205..16629216,-!p16@SOX6!0.93!7.51!SOX6;;chr4:87928142..87928165,+!p5@AFF1!0.92!26.16!AFF1;;chr19:20844346..20844351,-!p2@ZNF626!0.92!9.22!ZNF626;;chr18:45663490..45663528,-!p2@ZBTB7C!0.92!7.29!ZBTB7C;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.22!NCOA7;;chr11:32457413..32457431,-!p2@WT1!0.91!7.08!WT1;;chr2:16080659..16080685,+!p1@MYCN!0.91!7.08!MYCN;;chr11:120107344..120107351,+!p1@POU2F3!0.90!8.58!POU2F3;;chr11:16629369..16629392,-!p5@SOX6!0.90!6.86!SOX6;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.86!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.90!6.86!ZNF323;;chr2:25475094..25475112,-!p3@DNMT3A!0.90!6.86!DNMT3A;;chr18:19749517..19749531,+!p3@GATA6!0.89!12.44!GATA6;;chr12:80084167..80084197,-!p5@PAWR!0.88!16.08!PAWR;;chr8:106330696..106330719,+!p2@ZFPM2!0.88!8.58!ZFPM2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.88!6.65!SEBOX;;chr19:50432453..50432468,+!p1@ATF5!0.87!378.70!ATF5;;chr13:73633131..73633149,+!p1@KLF5!0.87!73.12!KLF5;;chr6:126240356..126240379,+!p7@NCOA7!0.87!7.93!NCOA7;;chr19:54058073..54058088,+!p1@ZNF331!0.87!6.43!ZNF331;;chr20:21494654..21494678,-!p2@NKX2-2!0.86!6.22!NKX2-2;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.22!HOXA3;;chr9:100615499..100615519,+!p1@FOXE1!0.86!6.22!FOXE1;;chr20:42295745..42295765,+!p1@MYBL2!0.85!105.51!MYBL2;;chr6:168227611..168227624,+!p2@MLLT4!0.85!9.01!MLLT4;;chr3:114343768..114343822,-!p1@ZBTB20!0.84!27.66!ZBTB20;;chr6:168227552..168227609,+!p1@MLLT4!0.83!50.61!MLLT4;;chr12:80084737..80084763,-!p3@PAWR!0.83!22.95!PAWR;;chr3:141747441..141747452,-!p4@TFDP2!0.83!8.36!TFDP2;;chr3:128207349..128207386,-!p3@GATA2!0.83!5.79!GATA2;;chr6:10415484..10415508,-!p3@TFAP2A!0.83!5.79!TFAP2A;;chr21:38071430..38071456,+!p1@SIM2!0.83!5.79!SIM2;;chr9:14314476..14314487,-!p9@NFIB!0.83!5.79!NFIB;;chr14:21566731..21566836,-!p1@ZNF219!0.82!65.19!ZNF219;;chr20:50721803..50721857,-!p2@ZFP64!0.82!9.22!ZFP64;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.58!KDM5D;;chr14:38064429..38064486,-!p1@FOXA1!0.82!5.58!FOXA1;;chr7:64838786..64838809,+!p2@ZNF92!0.81!33.24!ZNF92;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.09!ZNF467;;chr5:134369905..134369972,-!p1@PITX1!0.79!8.15!PITX1;;chr6:85474198..85474212,-!p3@TBX18!0.79!5.15!TBX18;;chr11:32457103..32457123,-!p3@WT1!0.7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| ||
|ffid_belonging_in_development=CL:0000222 | |||
|fonse_cell_line=FF:0101120,FF:0102424 | |fonse_cell_line=FF:0101120,FF:0102424 | ||
|fonse_cell_line_closure=FF:0101120,FF:0102424 | |fonse_cell_line_closure=FF:0101120,FF:0102424 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-4.CNhs11264.10494-107B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10494-107B8 | |id=FF:10494-107B8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102219;;FF:0102424 | ||
|is_obsolete= | |||
|library_id=CNhs11264 | |||
|library_id_phase_based=2:CNhs11264 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10494 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10494 | |||
|name=mesothelioma cell line:ACC-MESO-4 | |name=mesothelioma cell line:ACC-MESO-4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11264,LSID758, | |profile_hcage=CNhs11264,LSID758,release018,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.0421883161150136,0,0,0.237811487599659,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0.0843766322300271,0,0,0,0,0.00167371448110337,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.154996724829531,0,-0.198341800193176,0,0,0,0,0,0,0,0,0.628281665400878,0,0,0,0,0,0.00437045757066206,0,-0.012615729012578,0,0,0.057653097616434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.138652947356017,0,0,0,-0.0201918157202248,0.204794877057594,0.0421883161150136,0.466863814313153,0.0774983624147655,0.154996724829531,-0.0136587190076793,-0.0962888846858815,0,0,0,0.398129517686045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.061843074565683,0,0,0,-0.0740375802341695,-0.232264825171083,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0136587190076793,0,0.154996724829531,0,0.154996724829531,0,0,0,0,0.466863814313153,0,0,0.0218122205107905,0.0421883161150136,0.212545461329192,-0.143515142523472,0,0,-0.0866849345494026,0,0.0843766322300271,0,0.0300973519191949,0.398129517686045,0,0.215723402553475,0.316433336976288,0,-0.0437432347225376,0,0.383442490231566,0,0,0.0763259318991865,0,0.101061397445928,-0.22109559866838,0,-0.0967596987347445,0.0866524637521628,0,0.0500425456451157,0,0,0.0224715470519969,0,-0.120879483793741,0.0016564639066098,0.0547381937350306,-0.328069876320393,-0.0257637793484465,0,0,0.0421883161150136,0.182288358740423,-0.393414050390329,0,0,0.272537560220365,0.0040104451308435,0,0,-0.391044581551635,0,-0.195988220874253,0.0106364503576404,0,0.0787943807017786,0,0,0,0,0,0,0,0,0,0,0,0.444685646427539,0.41363249370045,0.011778335277435,0.221533899048844,0.740621090379419,0,-0.261134659485031,0,0.0705443214920899,-0.28890952372654,-0.0539085739313862,-0.0468502789976687,0.047230142840948,0,-0.218013094779886,-0.0223180899819387,-0.0648041199612144,-0.0745451969080548,0.0683215531823361,-0.0349849947203163,0,-0.138652947356017,-0.119239505302347,-0.0675593656169675,-0.215609618197205,-0.0600504692408007,-0.360229900727817,0.0231512165662895,0,0.359199609764675,0.00686770575072401,-0.186763548078387,0,0.0393652840666794,-0.335117989647243,0.085795133336589,-0.0519950017617505,-0.103905660642336,-0.0248197770652944,-0.0141833864854761,0.00265578765834301,-0.302439728067064,0,0.014016978875944,0.0740327747228531,0,-0.0861536359204338,-0.01961949068142,-0.045291016727903,-0.0896345932878743,0,-0.214986366014626,-0.0683442610773682,0.0774983624147655,0.12674197601976,-0.497868170525473,0.154996724829531,0,-0.144922189050531,0,0,0,0,0,0.0372300784866688,0.085472719972393,-0.232855561555545,0,0.064116760867318,0.0736830084455954,0.374404277221445,0,-0.0120798262373866,0.119591209314541,-0.0823507498078177,0.130377489319731,0,-0.207000042199541,-0.380228531971826,0.0507327062144719,0.0114602364291433,0.0259298054182019,0.0427406735710276,-0.0618724856557813,0.0839694416606487,0.14075772204469,0.122376584693788,-0.0037502002452606,0.0843766322300271,0.390581959733815,0.569123494515408,-0.0314338312703143,-0.398169840538069,0,0.21929424761402,0,0.306425499324531,0.0665803276654993,0.0272609660651505,0.200187338906179,-0.354912742350659,-0.0522143015354091,0,0.116773528600404,-0.101499257692774,0.094062095044769,0.019273580982749,0,0.0843766322300271,0.247762434351406,-0.171504386621778,0.501975957365721,0.289380340980303,0,0.219412738246245,0,0,-0.161596013381718,0.0335150580319662,0.0843766322300271,0.147224952535705,0.179431909731081,-0.0511466716419966,-0.0315944412049069,0.0843766322300271,0,0.61330374492531,0,0,0.954968802224089,-0.0636048451378017,0.309914262876283,0.0156647543095992,-0.086356644294504,0.0110638690755235,0,0,0.038195636588299,0,-0.60856132401275,0,0.215723402553475,-0.0141662656959143,0,0,0,0,0.0812689942188845,0,0,0,0,0.0651442948419115,0,0,0.386166186172461,0.171358249674357,0,-0.185994328686272,0,0.0843766322300271,0,0.359199609764675,0,-0.0184635615748639,0.215723402553475,0,0.729167484048789,-0.0346834082151299,-0.0386407834463932,0,0,0,0,0,-0.0482398372651928,0,0.365677279056688,0,0,0.0843766322300271,0.433855041820881,-0.00176435755918423,0,0,0.0774983624147655,0.0421883161150136,0.097266267775867,-0.221935360118295,0,0,0,-0.27695440160179,0,0,0,0,-0.102580291183688,0,0,0,0,-0.0661779649267795,0.95442039768423,0,0.00971842868265345,0.236622131424123,1.17111204079489,0,0,-0.0456237292364129,0,0,-0.128717224901227,0,0.0843766322300271,0.0212635401688966,0,0,0,0,0.0843766322300271,0,0.58921359942889,0.0230446450756382,0,0,0,0,0,0,0,0,0,0,-0.258554448428578,-0.0078474244284833,0,0,0,0,0,0,0,-0.0241060230789031,0.266880547043506,0,0,0,0,0,0,0,0,0.195607184148423,0,0,0,0.0113522995052894,0,-0.012615729012578,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0.00970888145484,0,0,0,0,0,0.0316776387940833,-0.418212044056075,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0.0843766322300271,0,0,0.652426120104618,0,0.237811487599659,0,0,0,0,0,0,0.199064758843022,0.0774983624147655,0,0,0,0,0,0,0,0,0,0.24876999277716,0,0,0,0.268624902956889,0,-0.0714841134194351,0.00874091514132413,0,0,0.331532700730048,0,0,0,0,0,0,0.0461579383862385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0426403186096771,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0276538687292529,0,0,0,0,0,0,-0.111292976643518,0.60380607598565,-0.0424896599167875,0,0,0,0.095664444909296,0,0,0.0472168276339162,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00167371448110337,0,0,0,0,0,0,0,0,0,0,0,0.0421883161150136,0.179599804882338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154996724829531,0.0421883161150136,0,0,0,0,0,0,0.166393621327741,0.316433336976288,0,0.398129517686045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,1.07565419219747,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=29.10775 | |rna_weight_ug=29.10775 | ||
|sample_age=59 | |sample_age=59 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2293 | |sample_cell_catalog=RCB2293 | ||
|sample_cell_line=ACC-MESO-4 | |sample_cell_line=ACC-MESO-4 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.84903353023902e-244!GO:0043226;organelle;4.51732462490264e-200!GO:0043229;intracellular organelle;1.44354937218072e-199!GO:0043231;intracellular membrane-bound organelle;4.6026135061362e-198!GO:0043227;membrane-bound organelle;6.43009096453901e-198!GO:0005737;cytoplasm;1.05330824603461e-176!GO:0044422;organelle part;1.55200022917611e-145!GO:0044446;intracellular organelle part;6.63414706178217e-144!GO:0044444;cytoplasmic part;2.52920898936523e-121!GO:0032991;macromolecular complex;1.33086486608367e-94!GO:0044238;primary metabolic process;8.12079700607311e-90!GO:0043170;macromolecule metabolic process;1.60473091372842e-89!GO:0005634;nucleus;1.37328588488161e-88!GO:0044237;cellular metabolic process;2.78342914092899e-88!GO:0005515;protein binding;4.46442036723623e-86!GO:0030529;ribonucleoprotein complex;1.81895295934743e-79!GO:0044428;nuclear part;1.01399944249099e-77!GO:0043233;organelle lumen;2.30603945034419e-75!GO:0031974;membrane-enclosed lumen;2.30603945034419e-75!GO:0003723;RNA binding;2.0226446481037e-73!GO:0005739;mitochondrion;4.77759268504904e-57!GO:0016043;cellular component organization and biogenesis;1.0647158148673e-55!GO:0043283;biopolymer metabolic process;5.26075262738541e-55!GO:0019538;protein metabolic process;8.40627596183979e-54!GO:0031981;nuclear lumen;2.27713592985893e-48!GO:0043234;protein complex;3.67752591366015e-48!GO:0044267;cellular protein metabolic process;7.82328866019949e-48!GO:0044260;cellular macromolecule metabolic process;1.8919330706033e-47!GO:0031090;organelle membrane;2.07368202497824e-46!GO:0005840;ribosome;2.76940502786564e-46!GO:0006396;RNA processing;1.11327381625239e-45!GO:0033036;macromolecule localization;2.33148584180642e-45!GO:0006412;translation;6.26807432407688e-45!GO:0010467;gene expression;1.32291741153503e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.59893367931631e-43!GO:0015031;protein transport;2.77901628525631e-43!GO:0008104;protein localization;1.91438083338891e-41!GO:0003735;structural constituent of ribosome;1.11196017350056e-40!GO:0045184;establishment of protein localization;3.23861732741741e-40!GO:0016071;mRNA metabolic process;1.4694023842442e-39!GO:0043228;non-membrane-bound organelle;3.92373529774252e-38!GO:0043232;intracellular non-membrane-bound organelle;3.92373529774252e-38!GO:0006259;DNA metabolic process;3.29405540084222e-37!GO:0044429;mitochondrial part;3.92579879298417e-37!GO:0009059;macromolecule biosynthetic process;3.12505335530652e-36!GO:0031967;organelle envelope;7.7816711542215e-36!GO:0031975;envelope;1.24924808177301e-35!GO:0008380;RNA splicing;1.69097009712692e-35!GO:0046907;intracellular transport;1.71276316514707e-35!GO:0033279;ribosomal subunit;2.2719739197923e-35!GO:0006996;organelle organization and biogenesis;2.64349284113983e-34!GO:0006397;mRNA processing;4.8170661039125e-34!GO:0005829;cytosol;1.69144957179218e-33!GO:0065003;macromolecular complex assembly;1.95696608375242e-33!GO:0009058;biosynthetic process;3.83329978602907e-33!GO:0005654;nucleoplasm;3.3631622856367e-31!GO:0022607;cellular component assembly;3.60306360759081e-30!GO:0006886;intracellular protein transport;7.27222287203365e-30!GO:0007049;cell cycle;2.71455178081869e-29!GO:0044249;cellular biosynthetic process;5.89989468130325e-29!GO:0003676;nucleic acid binding;3.168480303089e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.49140663664622e-26!GO:0005681;spliceosome;1.23110065327019e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.35861783409114e-25!GO:0044451;nucleoplasm part;2.53218664925878e-25!GO:0000166;nucleotide binding;1.02104375373414e-24!GO:0005740;mitochondrial envelope;4.82775010139481e-24!GO:0051649;establishment of cellular localization;1.41744833119505e-23!GO:0019866;organelle inner membrane;2.76978122915956e-23!GO:0051641;cellular localization;3.21203578258529e-23!GO:0031966;mitochondrial membrane;1.31470298107766e-22!GO:0005743;mitochondrial inner membrane;8.84381171733853e-22!GO:0016462;pyrophosphatase activity;8.84381171733853e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.08802894101629e-21!GO:0012505;endomembrane system;1.27232572643703e-21!GO:0022402;cell cycle process;1.37769226170872e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8308586948704e-21!GO:0017111;nucleoside-triphosphatase activity;2.71840192343011e-21!GO:0006974;response to DNA damage stimulus;3.10352586372426e-21!GO:0016070;RNA metabolic process;1.59076297825357e-20!GO:0044445;cytosolic part;1.74363429045409e-20!GO:0005783;endoplasmic reticulum;3.28487809486596e-20!GO:0006119;oxidative phosphorylation;5.67183784758601e-20!GO:0006512;ubiquitin cycle;5.82030057493195e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;8.69531953494874e-20!GO:0005694;chromosome;8.69531953494874e-20!GO:0019941;modification-dependent protein catabolic process;1.44851723502764e-19!GO:0043632;modification-dependent macromolecule catabolic process;1.44851723502764e-19!GO:0044257;cellular protein catabolic process;3.03822477496604e-19!GO:0043285;biopolymer catabolic process;3.86531314160942e-19!GO:0006511;ubiquitin-dependent protein catabolic process;3.88549422759415e-19!GO:0008134;transcription factor binding;5.828311982341e-19!GO:0005730;nucleolus;8.66370561615849e-19!GO:0006457;protein folding;1.43399255274562e-18!GO:0015935;small ribosomal subunit;1.47520914106514e-18!GO:0044455;mitochondrial membrane part;1.61879715101844e-18!GO:0006281;DNA repair;2.23886235037989e-18!GO:0022618;protein-RNA complex assembly;5.02984284717995e-18!GO:0016874;ligase activity;5.2986513376159e-18!GO:0000278;mitotic cell cycle;6.32283708121248e-18!GO:0015934;large ribosomal subunit;7.10361633006689e-18!GO:0044265;cellular macromolecule catabolic process;7.82953506848852e-18!GO:0032553;ribonucleotide binding;1.034373149465e-17!GO:0032555;purine ribonucleotide binding;1.034373149465e-17!GO:0044427;chromosomal part;1.35862483280064e-17!GO:0030163;protein catabolic process;1.97768110443105e-17!GO:0005794;Golgi apparatus;6.93339611859875e-17!GO:0017076;purine nucleotide binding;8.57750138537675e-17!GO:0051276;chromosome organization and biogenesis;1.04735195526987e-16!GO:0043412;biopolymer modification;1.14016581007217e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.57921116230457e-16!GO:0009057;macromolecule catabolic process;4.22310534760807e-16!GO:0005746;mitochondrial respiratory chain;7.05222793717348e-16!GO:0031980;mitochondrial lumen;8.4512501181114e-16!GO:0005759;mitochondrial matrix;8.4512501181114e-16!GO:0044432;endoplasmic reticulum part;1.01814418502348e-15!GO:0005524;ATP binding;1.54280924261772e-15!GO:0032559;adenyl ribonucleotide binding;3.36333493117904e-15!GO:0048770;pigment granule;4.83458885232814e-15!GO:0042470;melanosome;4.83458885232814e-15!GO:0006464;protein modification process;5.9512006127902e-15!GO:0006605;protein targeting;6.60911741162631e-15!GO:0006260;DNA replication;7.19384614064576e-15!GO:0048193;Golgi vesicle transport;1.07935763597232e-14!GO:0016604;nuclear body;1.32301659991707e-14!GO:0008135;translation factor activity, nucleic acid binding;1.32301659991707e-14!GO:0016192;vesicle-mediated transport;2.33449229751434e-14!GO:0030554;adenyl nucleotide binding;3.89934766078935e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.98117573145687e-14!GO:0000375;RNA splicing, via transesterification reactions;3.98117573145687e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.98117573145687e-14!GO:0051301;cell division;3.98117573145687e-14!GO:0009719;response to endogenous stimulus;4.35460771821796e-14!GO:0051082;unfolded protein binding;6.23477253373831e-14!GO:0000087;M phase of mitotic cell cycle;6.24800052830217e-14!GO:0007067;mitosis;6.68480468829157e-14!GO:0004386;helicase activity;7.59604871466315e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;9.14223451621792e-14!GO:0008639;small protein conjugating enzyme activity;1.1720474571551e-13!GO:0005761;mitochondrial ribosome;1.32499154240601e-13!GO:0000313;organellar ribosome;1.32499154240601e-13!GO:0022403;cell cycle phase;1.3909895616552e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.52824830872372e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.5454629914211e-13!GO:0003954;NADH dehydrogenase activity;1.5454629914211e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.5454629914211e-13!GO:0042623;ATPase activity, coupled;1.9110074310062e-13!GO:0004842;ubiquitin-protein ligase activity;1.91633120926435e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.94587050430075e-13!GO:0016887;ATPase activity;3.36248512443649e-13!GO:0006323;DNA packaging;3.63158101021482e-13!GO:0050794;regulation of cellular process;8.49466978663653e-13!GO:0019787;small conjugating protein ligase activity;8.63512920053537e-13!GO:0000074;regulation of progression through cell cycle;9.59781565084077e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.07062364313265e-12!GO:0044248;cellular catabolic process;1.10520117906495e-12!GO:0051726;regulation of cell cycle;1.29104640757179e-12!GO:0006366;transcription from RNA polymerase II promoter;2.13017426879682e-12!GO:0005635;nuclear envelope;3.17707340655916e-12!GO:0043687;post-translational protein modification;3.55764479297704e-12!GO:0003712;transcription cofactor activity;3.84374323855954e-12!GO:0006913;nucleocytoplasmic transport;5.592993693121e-12!GO:0012501;programmed cell death;5.85881036563539e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.04672795277059e-12!GO:0044453;nuclear membrane part;7.41821854143715e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.81359850882729e-12!GO:0045271;respiratory chain complex I;8.81359850882729e-12!GO:0005747;mitochondrial respiratory chain complex I;8.81359850882729e-12!GO:0042775;organelle ATP synthesis coupled electron transport;9.00488618157179e-12!GO:0042773;ATP synthesis coupled electron transport;9.00488618157179e-12!GO:0006915;apoptosis;1.00145194640843e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.14455585979682e-11!GO:0051169;nuclear transport;1.42333893231097e-11!GO:0016607;nuclear speck;1.94660203084529e-11!GO:0006413;translational initiation;2.48525088359584e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.68456291664605e-11!GO:0005789;endoplasmic reticulum membrane;5.10409756229791e-11!GO:0003743;translation initiation factor activity;5.29063979783551e-11!GO:0008026;ATP-dependent helicase activity;5.29063979783551e-11!GO:0016881;acid-amino acid ligase activity;6.04140489397084e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.77600585956161e-11!GO:0000279;M phase;7.61476568161769e-11!GO:0000785;chromatin;8.06233085589233e-11!GO:0031965;nuclear membrane;1.26812253603882e-10!GO:0006446;regulation of translational initiation;1.51817447068279e-10!GO:0008219;cell death;1.57665169480371e-10!GO:0016265;death;1.57665169480371e-10!GO:0006333;chromatin assembly or disassembly;3.41013705318591e-10!GO:0006461;protein complex assembly;4.78502910013103e-10!GO:0065002;intracellular protein transport across a membrane;5.79767490248008e-10!GO:0005643;nuclear pore;6.14468028725824e-10!GO:0051186;cofactor metabolic process;6.46258498835511e-10!GO:0050657;nucleic acid transport;8.4771937446131e-10!GO:0051236;establishment of RNA localization;8.4771937446131e-10!GO:0050658;RNA transport;8.4771937446131e-10!GO:0048523;negative regulation of cellular process;1.11331834995799e-09!GO:0042254;ribosome biogenesis and assembly;1.24553578766897e-09!GO:0006403;RNA localization;1.29098721523287e-09!GO:0050789;regulation of biological process;2.15484667352345e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.78466882686364e-09!GO:0016568;chromatin modification;3.79130139341303e-09!GO:0065004;protein-DNA complex assembly;4.98145580654957e-09!GO:0005793;ER-Golgi intermediate compartment;6.13993218896942e-09!GO:0008565;protein transporter activity;6.80959483885273e-09!GO:0043566;structure-specific DNA binding;1.0260500065175e-08!GO:0009055;electron carrier activity;1.72770104971363e-08!GO:0046930;pore complex;1.99792949351022e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.17674933712727e-08!GO:0017038;protein import;2.7355905166058e-08!GO:0009060;aerobic respiration;2.8926718083046e-08!GO:0051028;mRNA transport;4.24874894316003e-08!GO:0032446;protein modification by small protein conjugation;4.4462093370293e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.29980505391692e-08!GO:0005768;endosome;5.64992982082122e-08!GO:0048519;negative regulation of biological process;5.71836636407185e-08!GO:0015630;microtubule cytoskeleton;7.27809754012353e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.37192677315562e-08!GO:0016567;protein ubiquitination;7.40050444389689e-08!GO:0006888;ER to Golgi vesicle-mediated transport;7.9911715007229e-08!GO:0042981;regulation of apoptosis;8.37198656444844e-08!GO:0043067;regulation of programmed cell death;9.49896825000519e-08!GO:0006732;coenzyme metabolic process;1.01300304137685e-07!GO:0015986;ATP synthesis coupled proton transport;1.18326126652182e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18326126652182e-07!GO:0009259;ribonucleotide metabolic process;1.24065610975535e-07!GO:0009056;catabolic process;1.42292139151677e-07!GO:0044431;Golgi apparatus part;1.46017053033178e-07!GO:0051246;regulation of protein metabolic process;1.48659968075068e-07!GO:0003697;single-stranded DNA binding;1.73107097493564e-07!GO:0019829;cation-transporting ATPase activity;2.18134614613593e-07!GO:0016779;nucleotidyltransferase activity;2.20789014760681e-07!GO:0006399;tRNA metabolic process;2.37474553392458e-07!GO:0006163;purine nucleotide metabolic process;2.41493042506947e-07!GO:0045333;cellular respiration;2.74893802138517e-07!GO:0048475;coated membrane;2.7676061779525e-07!GO:0030117;membrane coat;2.7676061779525e-07!GO:0030120;vesicle coat;4.35139097970919e-07!GO:0030662;coated vesicle membrane;4.35139097970919e-07!GO:0005667;transcription factor complex;4.59238436822625e-07!GO:0009150;purine ribonucleotide metabolic process;4.77255944791388e-07!GO:0006164;purine nucleotide biosynthetic process;5.28250185788895e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.59299519217543e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.75485027118642e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.75485027118642e-07!GO:0006099;tricarboxylic acid cycle;5.75485027118642e-07!GO:0046356;acetyl-CoA catabolic process;5.75485027118642e-07!GO:0045786;negative regulation of progression through cell cycle;5.79009698105191e-07!GO:0003682;chromatin binding;6.21822110492365e-07!GO:0009260;ribonucleotide biosynthetic process;6.63968287866871e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.84867746160062e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.07202524416587e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.07202524416587e-07!GO:0009199;ribonucleoside triphosphate metabolic process;8.19647419717715e-07!GO:0019222;regulation of metabolic process;8.89683600776937e-07!GO:0043623;cellular protein complex assembly;9.06587846696894e-07!GO:0003714;transcription corepressor activity;9.50576130728069e-07!GO:0009152;purine ribonucleotide biosynthetic process;9.85798599637466e-07!GO:0005788;endoplasmic reticulum lumen;1.0773897052862e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.14751736647444e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.14751736647444e-06!GO:0009141;nucleoside triphosphate metabolic process;1.15325276305434e-06!GO:0000245;spliceosome assembly;1.20312288040275e-06!GO:0000775;chromosome, pericentric region;1.23238039212988e-06!GO:0006754;ATP biosynthetic process;1.72231444748875e-06!GO:0006753;nucleoside phosphate metabolic process;1.72231444748875e-06!GO:0006364;rRNA processing;2.06305755467967e-06!GO:0016564;transcription repressor activity;2.06516460029741e-06!GO:0006793;phosphorus metabolic process;2.08189819191222e-06!GO:0006796;phosphate metabolic process;2.08189819191222e-06!GO:0043069;negative regulation of programmed cell death;2.202562243312e-06!GO:0006084;acetyl-CoA metabolic process;2.28091293137501e-06!GO:0016072;rRNA metabolic process;2.34451115486112e-06!GO:0004298;threonine endopeptidase activity;2.43716543181166e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.44760932350666e-06!GO:0006334;nucleosome assembly;2.91660829165759e-06!GO:0006613;cotranslational protein targeting to membrane;3.04904686591572e-06!GO:0043066;negative regulation of apoptosis;3.12142662602307e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.32633951076765e-06!GO:0046034;ATP metabolic process;3.39838893801749e-06!GO:0003924;GTPase activity;3.39913518966706e-06!GO:0006916;anti-apoptosis;3.46236877292914e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.48572838534251e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.53301045590986e-06!GO:0006261;DNA-dependent DNA replication;3.59949471714281e-06!GO:0051170;nuclear import;3.63829949695447e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.25005498382836e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.25005498382836e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.25005498382836e-06!GO:0016563;transcription activator activity;4.3024595195356e-06!GO:0005813;centrosome;4.31951142641439e-06!GO:0007051;spindle organization and biogenesis;4.43467413967603e-06!GO:0007005;mitochondrion organization and biogenesis;4.49603359763701e-06!GO:0003713;transcription coactivator activity;4.90345801893844e-06!GO:0031497;chromatin assembly;5.1326843247995e-06!GO:0043038;amino acid activation;5.41315780609315e-06!GO:0006418;tRNA aminoacylation for protein translation;5.41315780609315e-06!GO:0043039;tRNA aminoacylation;5.41315780609315e-06!GO:0000139;Golgi membrane;6.09777933671304e-06!GO:0006606;protein import into nucleus;6.90777484403024e-06!GO:0045259;proton-transporting ATP synthase complex;6.90777484403024e-06!GO:0003690;double-stranded DNA binding;7.10754889725267e-06!GO:0016310;phosphorylation;7.25371802154941e-06!GO:0005819;spindle;7.96379231115376e-06!GO:0016787;hydrolase activity;8.26573757258144e-06!GO:0016469;proton-transporting two-sector ATPase complex;8.34236945840414e-06!GO:0051789;response to protein stimulus;8.41651605379011e-06!GO:0006986;response to unfolded protein;8.41651605379011e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.11086519127424e-06!GO:0000151;ubiquitin ligase complex;9.47008699168557e-06!GO:0009109;coenzyme catabolic process;9.98254282428627e-06!GO:0045454;cell redox homeostasis;1.02326914988698e-05!GO:0005798;Golgi-associated vesicle;1.03109388995413e-05!GO:0005815;microtubule organizing center;1.03992176828667e-05!GO:0031324;negative regulation of cellular metabolic process;1.18969323003406e-05!GO:0005769;early endosome;1.56848615860774e-05!GO:0051329;interphase of mitotic cell cycle;1.58963545687648e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.85427130875527e-05!GO:0051427;hormone receptor binding;1.9585998930845e-05!GO:0051187;cofactor catabolic process;2.13980326660455e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.18015984123578e-05!GO:0051168;nuclear export;2.19478460073982e-05!GO:0051325;interphase;2.34960990154133e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.50842486991147e-05!GO:0003724;RNA helicase activity;2.71532498442203e-05!GO:0016044;membrane organization and biogenesis;2.77276837486476e-05!GO:0031252;leading edge;3.43653067652229e-05!GO:0048522;positive regulation of cellular process;3.58607196266574e-05!GO:0005905;coated pit;3.58607196266574e-05!GO:0065007;biological regulation;3.61284665700521e-05!GO:0030867;rough endoplasmic reticulum membrane;3.71401447370709e-05!GO:0035257;nuclear hormone receptor binding;3.95753481345492e-05!GO:0009892;negative regulation of metabolic process;3.95753481345492e-05!GO:0006612;protein targeting to membrane;4.08976784991881e-05!GO:0031988;membrane-bound vesicle;4.88354520193675e-05!GO:0005657;replication fork;5.11521768199897e-05!GO:0016740;transferase activity;5.476071895946e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.87816820874127e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.12276189284468e-05!GO:0007010;cytoskeleton organization and biogenesis;6.13735391207066e-05!GO:0051188;cofactor biosynthetic process;6.77615362949635e-05!GO:0044440;endosomal part;6.81999319633831e-05!GO:0010008;endosome membrane;6.81999319633831e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.77846407556583e-05!GO:0003684;damaged DNA binding;7.77846407556583e-05!GO:0000075;cell cycle checkpoint;7.83340534160083e-05!GO:0000776;kinetochore;8.6346386918499e-05!GO:0043021;ribonucleoprotein binding;9.35274020046169e-05!GO:0005762;mitochondrial large ribosomal subunit;9.54035586855542e-05!GO:0000315;organellar large ribosomal subunit;9.54035586855542e-05!GO:0005770;late endosome;9.79418241055392e-05!GO:0048471;perinuclear region of cytoplasm;0.000100182319186848!GO:0005525;GTP binding;0.000104177011066002!GO:0008094;DNA-dependent ATPase activity;0.000141619026123854!GO:0031323;regulation of cellular metabolic process;0.000151663645436455!GO:0031982;vesicle;0.000167441999828598!GO:0003899;DNA-directed RNA polymerase activity;0.000168673896491961!GO:0009117;nucleotide metabolic process;0.000173805819391392!GO:0016853;isomerase activity;0.0001847061534898!GO:0000314;organellar small ribosomal subunit;0.000196496435612693!GO:0005763;mitochondrial small ribosomal subunit;0.000196496435612693!GO:0006752;group transfer coenzyme metabolic process;0.000208585915039434!GO:0030036;actin cytoskeleton organization and biogenesis;0.000209991412187178!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000218475812004416!GO:0031410;cytoplasmic vesicle;0.000226087225744945!GO:0003729;mRNA binding;0.000238671275244491!GO:0005773;vacuole;0.000239287257852235!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00024034934704861!GO:0016481;negative regulation of transcription;0.000274930975218612!GO:0006302;double-strand break repair;0.00032435802009283!GO:0005885;Arp2/3 protein complex;0.000341627671153871!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000345776780038469!GO:0019843;rRNA binding;0.00034722394368821!GO:0006350;transcription;0.000450409645354876!GO:0008250;oligosaccharyl transferase complex;0.00046657080687507!GO:0008186;RNA-dependent ATPase activity;0.000497470491060998!GO:0004576;oligosaccharyl transferase activity;0.000523820890199717!GO:0016363;nuclear matrix;0.000548594688275977!GO:0006310;DNA recombination;0.000568123212823195!GO:0006402;mRNA catabolic process;0.000640909835110431!GO:0018196;peptidyl-asparagine modification;0.000699572798892863!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000699572798892863!GO:0008092;cytoskeletal protein binding;0.000710929522004595!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000721113319740144!GO:0004674;protein serine/threonine kinase activity;0.000732059861673714!GO:0009108;coenzyme biosynthetic process;0.000801861048954401!GO:0007059;chromosome segregation;0.000817043700300737!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000828135343712322!GO:0051052;regulation of DNA metabolic process;0.000828135343712322!GO:0016491;oxidoreductase activity;0.000842777633883443!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000858043866074189!GO:0048500;signal recognition particle;0.00087631521388784!GO:0048518;positive regulation of biological process;0.000884390705571507!GO:0019899;enzyme binding;0.000931402822363699!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000957519367410855!GO:0016859;cis-trans isomerase activity;0.000974059474831045!GO:0016126;sterol biosynthetic process;0.000982567864182757!GO:0033116;ER-Golgi intermediate compartment membrane;0.000994311916652982!GO:0000323;lytic vacuole;0.00107521497819361!GO:0005764;lysosome;0.00107521497819361!GO:0008654;phospholipid biosynthetic process;0.00109678906791029!GO:0015980;energy derivation by oxidation of organic compounds;0.00113965143153975!GO:0032561;guanyl ribonucleotide binding;0.00113965143153975!GO:0019001;guanyl nucleotide binding;0.00113965143153975!GO:0030029;actin filament-based process;0.00116324480585197!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00126678308698941!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00138332072491701!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00138332072491701!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00138332072491701!GO:0004004;ATP-dependent RNA helicase activity;0.00140653970469394!GO:0030176;integral to endoplasmic reticulum membrane;0.00141285371472174!GO:0030134;ER to Golgi transport vesicle;0.00142928854155632!GO:0006091;generation of precursor metabolites and energy;0.00151805714290376!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00152383378082487!GO:0003678;DNA helicase activity;0.00159171605714671!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00162433946525919!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00168468274161414!GO:0006401;RNA catabolic process;0.00174097799807706!GO:0007243;protein kinase cascade;0.00174249442748575!GO:0005048;signal sequence binding;0.00176630060372303!GO:0007052;mitotic spindle organization and biogenesis;0.00179180482302027!GO:0007088;regulation of mitosis;0.00185393342196637!GO:0006414;translational elongation;0.00191475330650472!GO:0065009;regulation of a molecular function;0.00193007435903632!GO:0008234;cysteine-type peptidase activity;0.00200948965092373!GO:0008632;apoptotic program;0.00200948965092373!GO:0051252;regulation of RNA metabolic process;0.00201115072248835!GO:0008312;7S RNA binding;0.00204760580016895!GO:0030663;COPI coated vesicle membrane;0.0021223117561131!GO:0030126;COPI vesicle coat;0.0021223117561131!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00219602723149495!GO:0045047;protein targeting to ER;0.00219602723149495!GO:0043681;protein import into mitochondrion;0.00229960368839327!GO:0006352;transcription initiation;0.00234357750637302!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00234780239159888!GO:0015399;primary active transmembrane transporter activity;0.00234780239159888!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00238709765433866!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00239908240738229!GO:0010468;regulation of gene expression;0.00245698654568626!GO:0003746;translation elongation factor activity;0.00261710995744729!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00264095570471664!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00267511099981797!GO:0042802;identical protein binding;0.00268070181770938!GO:0016197;endosome transport;0.00270025175970735!GO:0030127;COPII vesicle coat;0.00270025175970735!GO:0012507;ER to Golgi transport vesicle membrane;0.00270025175970735!GO:0006509;membrane protein ectodomain proteolysis;0.0027306564934527!GO:0033619;membrane protein proteolysis;0.0027306564934527!GO:0005791;rough endoplasmic reticulum;0.00285656767826489!GO:0015631;tubulin binding;0.0028788217368625!GO:0006383;transcription from RNA polymerase III promoter;0.00291125552778709!GO:0005684;U2-dependent spliceosome;0.00294296044156737!GO:0006626;protein targeting to mitochondrion;0.00304115190281014!GO:0045941;positive regulation of transcription;0.00316005671778002!GO:0001726;ruffle;0.0031790725587045!GO:0051920;peroxiredoxin activity;0.00317971392327238!GO:0030118;clathrin coat;0.00339680436077008!GO:0048487;beta-tubulin binding;0.00352335376831203!GO:0006897;endocytosis;0.00356083765609214!GO:0010324;membrane invagination;0.00356083765609214!GO:0019867;outer membrane;0.00359127998157034!GO:0003702;RNA polymerase II transcription factor activity;0.00360333140278553!GO:0006891;intra-Golgi vesicle-mediated transport;0.00360894537434075!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00363723156701747!GO:0008022;protein C-terminus binding;0.00364744213143392!GO:0031072;heat shock protein binding;0.00365492015685139!GO:0051101;regulation of DNA binding;0.00378319265503124!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00385513288345514!GO:0031124;mRNA 3'-end processing;0.00396095210385746!GO:0030658;transport vesicle membrane;0.00403898347523201!GO:0000792;heterochromatin;0.00412368974300118!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00425634697287197!GO:0015002;heme-copper terminal oxidase activity;0.00425634697287197!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00425634697287197!GO:0004129;cytochrome-c oxidase activity;0.00425634697287197!GO:0043488;regulation of mRNA stability;0.00430029361427785!GO:0043487;regulation of RNA stability;0.00430029361427785!GO:0007093;mitotic cell cycle checkpoint;0.00430513436652796!GO:0045893;positive regulation of transcription, DNA-dependent;0.00431622401253059!GO:0030027;lamellipodium;0.00438845738766567!GO:0048468;cell development;0.00448930341606326!GO:0030137;COPI-coated vesicle;0.00452234364737624!GO:0006695;cholesterol biosynthetic process;0.00457190469716859!GO:0031901;early endosome membrane;0.00457916544033306!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00469155909443269!GO:0003756;protein disulfide isomerase activity;0.0046919519626061!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0046919519626061!GO:0031968;organelle outer membrane;0.00474220869583791!GO:0035258;steroid hormone receptor binding;0.00506865550961207!GO:0032508;DNA duplex unwinding;0.00520150807955586!GO:0032392;DNA geometric change;0.00520150807955586!GO:0006950;response to stress;0.0052441547111462!GO:0005874;microtubule;0.00533897255899536!GO:0015992;proton transport;0.00556712095083149!GO:0000786;nucleosome;0.00557204637664995!GO:0008139;nuclear localization sequence binding;0.00567350118790658!GO:0006405;RNA export from nucleus;0.00574620125452354!GO:0007264;small GTPase mediated signal transduction;0.00579812056575468!GO:0030132;clathrin coat of coated pit;0.00598826469271582!GO:0030659;cytoplasmic vesicle membrane;0.00601726130597082!GO:0006818;hydrogen transport;0.00604191429324837!GO:0030133;transport vesicle;0.00615135433908971!GO:0006839;mitochondrial transport;0.00633755391659811!GO:0016584;nucleosome positioning;0.00636644677209156!GO:0006611;protein export from nucleus;0.00636644677209156!GO:0007006;mitochondrial membrane organization and biogenesis;0.00642564521173876!GO:0045045;secretory pathway;0.00675736863527954!GO:0003711;transcription elongation regulator activity;0.00681508568103708!GO:0007017;microtubule-based process;0.00686041069320481!GO:0044452;nucleolar part;0.00686041069320481!GO:0051087;chaperone binding;0.00716187832544867!GO:0030521;androgen receptor signaling pathway;0.0075068097266177!GO:0017166;vinculin binding;0.0075111747696633!GO:0047485;protein N-terminus binding;0.00831710609023013!GO:0030433;ER-associated protein catabolic process;0.00841496956889442!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00841496956889442!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00842028876277584!GO:0016251;general RNA polymerase II transcription factor activity;0.00857933490387061!GO:0006338;chromatin remodeling;0.0086964238239924!GO:0019783;small conjugating protein-specific protease activity;0.00892406117839865!GO:0046966;thyroid hormone receptor binding;0.0090129773684527!GO:0006672;ceramide metabolic process;0.00910279390270584!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00921605462266578!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00921605462266578!GO:0043130;ubiquitin binding;0.00924204696594009!GO:0032182;small conjugating protein binding;0.00924204696594009!GO:0006378;mRNA polyadenylation;0.00925585294942589!GO:0005876;spindle microtubule;0.00944968453771244!GO:0030880;RNA polymerase complex;0.00945973016088584!GO:0006284;base-excision repair;0.00994092632163004!GO:0008361;regulation of cell size;0.0102910488842373!GO:0008047;enzyme activator activity;0.0104616411060055!GO:0043022;ribosome binding;0.0109472010624925!GO:0043492;ATPase activity, coupled to movement of substances;0.0111007513070219!GO:0030660;Golgi-associated vesicle membrane;0.0111975853809133!GO:0031123;RNA 3'-end processing;0.0114764760850345!GO:0051128;regulation of cellular component organization and biogenesis;0.0119077240934971!GO:0004843;ubiquitin-specific protease activity;0.011994437190563!GO:0030518;steroid hormone receptor signaling pathway;0.011994437190563!GO:0000082;G1/S transition of mitotic cell cycle;0.0122318650492738!GO:0030496;midbody;0.0122713761997708!GO:0032774;RNA biosynthetic process;0.0123471996934772!GO:0000049;tRNA binding;0.0124039229741035!GO:0031970;organelle envelope lumen;0.0124841576162272!GO:0030119;AP-type membrane coat adaptor complex;0.0125534103989035!GO:0000059;protein import into nucleus, docking;0.0127369449898944!GO:0006268;DNA unwinding during replication;0.0128863636599972!GO:0006417;regulation of translation;0.0132342633290151!GO:0008033;tRNA processing;0.0132342633290151!GO:0030031;cell projection biogenesis;0.0132912664533853!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.013397387601653!GO:0030139;endocytic vesicle;0.0139436388813578!GO:0000339;RNA cap binding;0.0139650512430137!GO:0006351;transcription, DNA-dependent;0.0140143928636359!GO:0046474;glycerophospholipid biosynthetic process;0.0142955967510827!GO:0009165;nucleotide biosynthetic process;0.0145482216951767!GO:0016272;prefoldin complex;0.0147215924965838!GO:0006289;nucleotide-excision repair;0.0148811664588479!GO:0016049;cell growth;0.0148811664588479!GO:0051540;metal cluster binding;0.0148811664588479!GO:0051536;iron-sulfur cluster binding;0.0148811664588479!GO:0006984;ER-nuclear signaling pathway;0.0149341153340967!GO:0044433;cytoplasmic vesicle part;0.0151071785947851!GO:0043065;positive regulation of apoptosis;0.0153566445917036!GO:0005938;cell cortex;0.0155038201776938!GO:0004527;exonuclease activity;0.0155495980894346!GO:0032200;telomere organization and biogenesis;0.0155873624775844!GO:0000723;telomere maintenance;0.0155873624775844!GO:0005869;dynactin complex;0.0157196503772119!GO:0030131;clathrin adaptor complex;0.0157703553701018!GO:0004221;ubiquitin thiolesterase activity;0.0157711485742767!GO:0045892;negative regulation of transcription, DNA-dependent;0.0158455637455068!GO:0046489;phosphoinositide biosynthetic process;0.0161609683871573!GO:0006595;polyamine metabolic process;0.0161740112300832!GO:0005832;chaperonin-containing T-complex;0.0164273845008214!GO:0006892;post-Golgi vesicle-mediated transport;0.0165340556303102!GO:0051098;regulation of binding;0.0165804393081401!GO:0005862;muscle thin filament tropomyosin;0.0169182385487804!GO:0009615;response to virus;0.017119958857008!GO:0006376;mRNA splice site selection;0.0172331774631461!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0172331774631461!GO:0043068;positive regulation of programmed cell death;0.0175940794960516!GO:0050681;androgen receptor binding;0.0180200146160045!GO:0005741;mitochondrial outer membrane;0.0180495396718748!GO:0046822;regulation of nucleocytoplasmic transport;0.0180826218540986!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0181162587435797!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0185489341800651!GO:0000428;DNA-directed RNA polymerase complex;0.0185489341800651!GO:0000228;nuclear chromosome;0.0186760111181365!GO:0004197;cysteine-type endopeptidase activity;0.0197856523265795!GO:0043284;biopolymer biosynthetic process;0.0200524252101902!GO:0012506;vesicle membrane;0.0203862425515439!GO:0031529;ruffle organization and biogenesis;0.0204575595017291!GO:0051059;NF-kappaB binding;0.0205065921497617!GO:0006144;purine base metabolic process;0.0205881766701009!GO:0007050;cell cycle arrest;0.0206264183380987!GO:0043624;cellular protein complex disassembly;0.0206664290509024!GO:0043414;biopolymer methylation;0.0210381638157668!GO:0022890;inorganic cation transmembrane transporter activity;0.0210735969336215!GO:0006979;response to oxidative stress;0.0212322732077729!GO:0007004;telomere maintenance via telomerase;0.0214591203491993!GO:0005637;nuclear inner membrane;0.02164816507338!GO:0000209;protein polyubiquitination;0.0222847373608105!GO:0043189;H4/H2A histone acetyltransferase complex;0.0223780786499997!GO:0016408;C-acyltransferase activity;0.0229146763591361!GO:0035267;NuA4 histone acetyltransferase complex;0.0229625684011627!GO:0030833;regulation of actin filament polymerization;0.0231395040752936!GO:0046519;sphingoid metabolic process;0.0240280209744409!GO:0006275;regulation of DNA replication;0.0247953373152777!GO:0030145;manganese ion binding;0.0252429942364587!GO:0031625;ubiquitin protein ligase binding;0.0254359120662974!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.025921734955462!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0260645365337533!GO:0008637;apoptotic mitochondrial changes;0.0268301132112058!GO:0008538;proteasome activator activity;0.0280229964565026!GO:0001558;regulation of cell growth;0.0282484665389494!GO:0046467;membrane lipid biosynthetic process;0.0282484665389494!GO:0000123;histone acetyltransferase complex;0.0295953922506595!GO:0030968;unfolded protein response;0.030374679441855!GO:0030100;regulation of endocytosis;0.030374679441855!GO:0042393;histone binding;0.0312606088023439!GO:0035035;histone acetyltransferase binding;0.0315914537115209!GO:0032507;maintenance of cellular protein localization;0.031778355799118!GO:0043596;nuclear replication fork;0.031874536821822!GO:0005758;mitochondrial intermembrane space;0.0320280273558474!GO:0032153;cell division site;0.0328993647883485!GO:0032155;cell division site part;0.0328993647883485!GO:0005784;translocon complex;0.0330718294236203!GO:0031570;DNA integrity checkpoint;0.0341040287144551!GO:0042770;DNA damage response, signal transduction;0.0342976810862022!GO:0046983;protein dimerization activity;0.0359833577322427!GO:0004003;ATP-dependent DNA helicase activity;0.0362707679607121!GO:0045449;regulation of transcription;0.0363728354403901!GO:0008629;induction of apoptosis by intracellular signals;0.0365949476538589!GO:0016202;regulation of striated muscle development;0.0370175306086362!GO:0000781;chromosome, telomeric region;0.0376434954764701!GO:0007346;regulation of progression through mitotic cell cycle;0.0394465756520304!GO:0030522;intracellular receptor-mediated signaling pathway;0.0405135796705254!GO:0040029;regulation of gene expression, epigenetic;0.04081462485994!GO:0043631;RNA polyadenylation;0.0419957549457489!GO:0007030;Golgi organization and biogenesis;0.0422120479848572!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0423311033626175!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0423311033626175!GO:0016790;thiolester hydrolase activity;0.0438184671298961!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0440591576337973!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0441653520012202!GO:0032984;macromolecular complex disassembly;0.045426692408062!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0455329088034258!GO:0045185;maintenance of protein localization;0.0455329088034258!GO:0009112;nucleobase metabolic process;0.0458077785565791!GO:0031902;late endosome membrane;0.0465282600307817!GO:0000910;cytokinesis;0.0476569699122224!GO:0000725;recombinational repair;0.0479405066701264!GO:0000724;double-strand break repair via homologous recombination;0.0479405066701264!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0481448078340792!GO:0032259;methylation;0.0482140008478508!GO:0008610;lipid biosynthetic process;0.0482464145096815!GO:0000086;G2/M transition of mitotic cell cycle;0.0485873179329544!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0485873179329544!GO:0033130;acetylcholine receptor binding;0.0487800670878395!GO:0050790;regulation of catalytic activity;0.0488449455221834!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0488569946004831!GO:0006354;RNA elongation;0.0495036094315036!GO:0009100;glycoprotein metabolic process;0.0495562872785973!GO:0005795;Golgi stack;0.0496821131394013 | |||
|sample_id=10494 | |sample_id=10494 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=mesothelium | |sample_tissue=mesothelium | ||
|top_motifs=TEF:1.86611113454;TEAD1:1.64317456486;HMGA1,2:1.35322610276;NKX3-1:1.3343588388;HOXA9_MEIS1:1.32916222572;NR6A1:1.31115749297;EVI1:1.16934258039;EN1,2:1.11104125749;PAX8:1.10718624089;IRF7:1.06836625558;RBPJ:1.04024819452;TFDP1:1.03321263023;HSF1,2:0.981698334265;FOX{I1,J2}:0.94981699448;CRX:0.945198989368;STAT1,3:0.940365192995;ADNP_IRX_SIX_ZHX:0.938438575822;FOXP1:0.908740658119;E2F1..5:0.902031498323;SNAI1..3:0.90105142437;CDX1,2,4:0.852918767401;MAZ:0.843231518724;ZNF148:0.793718119266;TP53:0.780271850871;ZEB1:0.776448277913;FOXL1:0.775704288736;CDC5L:0.755435904807;IRF1,2:0.727837937568;STAT2,4,6:0.672994963367;MZF1:0.672474696867;TOPORS:0.670472059189;PAX4:0.664166978771;NFY{A,B,C}:0.63378884632;HOX{A5,B5}:0.613578514324;PITX1..3:0.539889668247;LMO2:0.536914701231;MYOD1:0.523784067891;SOX2:0.52304211296;TBX4,5:0.513611476087;NR3C1:0.483161858333;RXR{A,B,G}:0.477123563624;ZIC1..3:0.47490484978;HOX{A4,D4}:0.469910483231;NFIL3:0.454941159951;XCPE1{core}:0.429967903895;FOXQ1:0.427088256135;GATA6:0.413421312958;TLX2:0.413095173823;TLX1..3_NFIC{dimer}:0.411347653992;POU1F1:0.398340549342;ELK1,4_GABP{A,B1}:0.397298186155;EGR1..3:0.384678698346;T:0.376882286353;EP300:0.375595301838;RREB1:0.365841767768;FOXA2:0.35147200613;PRRX1,2:0.337214312831;bHLH_family:0.322420870638;IKZF2:0.306848078922;HES1:0.30578346972;LHX3,4:0.301492841168;GLI1..3:0.291755398104;FOXO1,3,4:0.279543933281;GTF2I:0.275707015314;ZNF143:0.26852545909;FOXM1:0.26830525482;CEBPA,B_DDIT3:0.247278020078;PDX1:0.221835649492;POU2F1..3:0.205767716064;AIRE:0.188839250141;TFAP2B:0.184226515248;SRF:0.176227594152;SOX17:0.159212927181;FOXP3:0.153107898729;MAFB:0.151574985433;OCT4_SOX2{dimer}:0.143123058171;PAX3,7:0.135679468429;STAT5{A,B}:0.13356900017;TAL1_TCF{3,4,12}:0.110602329686;GFI1:0.0854019662809;CUX2:0.0804004395356;FOX{F1,F2,J1}:0.0750583362831;LEF1_TCF7_TCF7L1,2:0.073878029628;FOXN1:0.0622938380174;ZBTB16:0.0579191197415;PAX5:0.0418345317982;HOX{A6,A7,B6,B7}:0.0387663005374;IKZF1:0.0383819825537;HNF1A:0.0370725942224;YY1:0.02762548512;ATF4:0.0162651569781;FOXD3:0.0155610617946;NKX3-2:0.011351841533;GFI1B:0.00908894621843;NFKB1_REL_RELA:0.000689249306636;ARID5B:-0.00372736296864;SP1:-0.0211524840192;MYBL2:-0.0233859179347;MTE{core}:-0.0261735649032;ZNF384:-0.0412082315621;PATZ1:-0.0468878453329;RORA:-0.0483634214066;SPZ1:-0.0488126444793;ZNF423:-0.0549356920848;POU3F1..4:-0.058842282951;RFX1:-0.061591641221;NKX2-1,4:-0.0684368423179;EBF1:-0.0839867475411;HBP1_HMGB_SSRP1_UBTF:-0.0846390052424;HNF4A_NR2F1,2:-0.0944627424456;NKX6-1,2:-0.0952178361532;NKX2-2,8:-0.114893278958;NRF1:-0.120588350996;TBP:-0.140402789974;FOS_FOS{B,L1}_JUN{B,D}:-0.159244700775;SREBF1,2:-0.160146381157;HIC1:-0.171270335233;PAX6:-0.172791583997;HAND1,2:-0.176595247759;NFATC1..3:-0.183244065355;XBP1:-0.200770026598;PRDM1:-0.201509909649;HLF:-0.206128386629;GZF1:-0.219632760213;ZBTB6:-0.221151059958;ATF5_CREB3:-0.228615695362;BACH2:-0.238113460223;SOX5:-0.241295653421;PAX1,9:-0.247572986279;NR1H4:-0.248204282623;TFCP2:-0.261051550343;ESR1:-0.262173831976;DBP:-0.26280255168;ONECUT1,2:-0.266804552569;NFE2L1:-0.270494446155;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.280710289762;ELF1,2,4:-0.362580879589;NFE2:-0.368435964429;NKX2-3_NKX2-5:-0.377566437087;PBX1:-0.379788881128;GCM1,2:-0.387793731512;FOSL2:-0.394175426508;JUN:-0.402799873795;MYB:-0.406935495657;MED-1{core}:-0.414215402428;SPI1:-0.423777207767;NR5A1,2:-0.424177675108;UFEwm:-0.42466319665;SMAD1..7,9:-0.440817162047;SOX{8,9,10}:-0.441859988811;POU5F1:-0.447313427557;ATF6:-0.45897511743;ESRRA:-0.460919822544;KLF4:-0.463773873755;RUNX1..3:-0.47235592938;ETS1,2:-0.476642737649;DMAP1_NCOR{1,2}_SMARC:-0.506570815245;AR:-0.513747989847;HIF1A:-0.51759384472;RXRA_VDR{dimer}:-0.524153016786;CREB1:-0.532579604949;TFAP2{A,C}:-0.538772700554;FOX{D1,D2}:-0.54016395352;AHR_ARNT_ARNT2:-0.549421496421;ZFP161:-0.559995596999;SPIB:-0.571538427738;RFX2..5_RFXANK_RFXAP:-0.575214606731;NFE2L2:-0.582175093609;NANOG:-0.588061414043;PAX2:-0.607853276029;MEF2{A,B,C,D}:-0.634125128451;ATF2:-0.636774962682;REST:-0.660885993505;BREu{core}:-0.687207624022;TGIF1:-0.689943341044;NFIX:-0.727042674837;POU6F1:-0.748244637364;MYFfamily:-0.756698260778;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.757119410878;BPTF:-0.762222956151;ALX4:-0.792704275421;GATA4:-0.84389378163;ZNF238:-0.857332239264;GTF2A1,2:-0.915329369397;TFAP4:-0.964223158419;PPARG:-1.0979349371;VSX1,2:-1.14421085951;NANOG{mouse}:-1.16269438879;ALX1:-1.19126312455;MTF1:-1.20268545417;NHLH1,2:-1.2484362641;HMX1:-1.45545954043 | |top_motifs=TEF:1.86611113454;TEAD1:1.64317456486;HMGA1,2:1.35322610276;NKX3-1:1.3343588388;HOXA9_MEIS1:1.32916222572;NR6A1:1.31115749297;EVI1:1.16934258039;EN1,2:1.11104125749;PAX8:1.10718624089;IRF7:1.06836625558;RBPJ:1.04024819452;TFDP1:1.03321263023;HSF1,2:0.981698334265;FOX{I1,J2}:0.94981699448;CRX:0.945198989368;STAT1,3:0.940365192995;ADNP_IRX_SIX_ZHX:0.938438575822;FOXP1:0.908740658119;E2F1..5:0.902031498323;SNAI1..3:0.90105142437;CDX1,2,4:0.852918767401;MAZ:0.843231518724;ZNF148:0.793718119266;TP53:0.780271850871;ZEB1:0.776448277913;FOXL1:0.775704288736;CDC5L:0.755435904807;IRF1,2:0.727837937568;STAT2,4,6:0.672994963367;MZF1:0.672474696867;TOPORS:0.670472059189;PAX4:0.664166978771;NFY{A,B,C}:0.63378884632;HOX{A5,B5}:0.613578514324;PITX1..3:0.539889668247;LMO2:0.536914701231;MYOD1:0.523784067891;SOX2:0.52304211296;TBX4,5:0.513611476087;NR3C1:0.483161858333;RXR{A,B,G}:0.477123563624;ZIC1..3:0.47490484978;HOX{A4,D4}:0.469910483231;NFIL3:0.454941159951;XCPE1{core}:0.429967903895;FOXQ1:0.427088256135;GATA6:0.413421312958;TLX2:0.413095173823;TLX1..3_NFIC{dimer}:0.411347653992;POU1F1:0.398340549342;ELK1,4_GABP{A,B1}:0.397298186155;EGR1..3:0.384678698346;T:0.376882286353;EP300:0.375595301838;RREB1:0.365841767768;FOXA2:0.35147200613;PRRX1,2:0.337214312831;bHLH_family:0.322420870638;IKZF2:0.306848078922;HES1:0.30578346972;LHX3,4:0.301492841168;GLI1..3:0.291755398104;FOXO1,3,4:0.279543933281;GTF2I:0.275707015314;ZNF143:0.26852545909;FOXM1:0.26830525482;CEBPA,B_DDIT3:0.247278020078;PDX1:0.221835649492;POU2F1..3:0.205767716064;AIRE:0.188839250141;TFAP2B:0.184226515248;SRF:0.176227594152;SOX17:0.159212927181;FOXP3:0.153107898729;MAFB:0.151574985433;OCT4_SOX2{dimer}:0.143123058171;PAX3,7:0.135679468429;STAT5{A,B}:0.13356900017;TAL1_TCF{3,4,12}:0.110602329686;GFI1:0.0854019662809;CUX2:0.0804004395356;FOX{F1,F2,J1}:0.0750583362831;LEF1_TCF7_TCF7L1,2:0.073878029628;FOXN1:0.0622938380174;ZBTB16:0.0579191197415;PAX5:0.0418345317982;HOX{A6,A7,B6,B7}:0.0387663005374;IKZF1:0.0383819825537;HNF1A:0.0370725942224;YY1:0.02762548512;ATF4:0.0162651569781;FOXD3:0.0155610617946;NKX3-2:0.011351841533;GFI1B:0.00908894621843;NFKB1_REL_RELA:0.000689249306636;ARID5B:-0.00372736296864;SP1:-0.0211524840192;MYBL2:-0.0233859179347;MTE{core}:-0.0261735649032;ZNF384:-0.0412082315621;PATZ1:-0.0468878453329;RORA:-0.0483634214066;SPZ1:-0.0488126444793;ZNF423:-0.0549356920848;POU3F1..4:-0.058842282951;RFX1:-0.061591641221;NKX2-1,4:-0.0684368423179;EBF1:-0.0839867475411;HBP1_HMGB_SSRP1_UBTF:-0.0846390052424;HNF4A_NR2F1,2:-0.0944627424456;NKX6-1,2:-0.0952178361532;NKX2-2,8:-0.114893278958;NRF1:-0.120588350996;TBP:-0.140402789974;FOS_FOS{B,L1}_JUN{B,D}:-0.159244700775;SREBF1,2:-0.160146381157;HIC1:-0.171270335233;PAX6:-0.172791583997;HAND1,2:-0.176595247759;NFATC1..3:-0.183244065355;XBP1:-0.200770026598;PRDM1:-0.201509909649;HLF:-0.206128386629;GZF1:-0.219632760213;ZBTB6:-0.221151059958;ATF5_CREB3:-0.228615695362;BACH2:-0.238113460223;SOX5:-0.241295653421;PAX1,9:-0.247572986279;NR1H4:-0.248204282623;TFCP2:-0.261051550343;ESR1:-0.262173831976;DBP:-0.26280255168;ONECUT1,2:-0.266804552569;NFE2L1:-0.270494446155;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.280710289762;ELF1,2,4:-0.362580879589;NFE2:-0.368435964429;NKX2-3_NKX2-5:-0.377566437087;PBX1:-0.379788881128;GCM1,2:-0.387793731512;FOSL2:-0.394175426508;JUN:-0.402799873795;MYB:-0.406935495657;MED-1{core}:-0.414215402428;SPI1:-0.423777207767;NR5A1,2:-0.424177675108;UFEwm:-0.42466319665;SMAD1..7,9:-0.440817162047;SOX{8,9,10}:-0.441859988811;POU5F1:-0.447313427557;ATF6:-0.45897511743;ESRRA:-0.460919822544;KLF4:-0.463773873755;RUNX1..3:-0.47235592938;ETS1,2:-0.476642737649;DMAP1_NCOR{1,2}_SMARC:-0.506570815245;AR:-0.513747989847;HIF1A:-0.51759384472;RXRA_VDR{dimer}:-0.524153016786;CREB1:-0.532579604949;TFAP2{A,C}:-0.538772700554;FOX{D1,D2}:-0.54016395352;AHR_ARNT_ARNT2:-0.549421496421;ZFP161:-0.559995596999;SPIB:-0.571538427738;RFX2..5_RFXANK_RFXAP:-0.575214606731;NFE2L2:-0.582175093609;NANOG:-0.588061414043;PAX2:-0.607853276029;MEF2{A,B,C,D}:-0.634125128451;ATF2:-0.636774962682;REST:-0.660885993505;BREu{core}:-0.687207624022;TGIF1:-0.689943341044;NFIX:-0.727042674837;POU6F1:-0.748244637364;MYFfamily:-0.756698260778;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.757119410878;BPTF:-0.762222956151;ALX4:-0.792704275421;GATA4:-0.84389378163;ZNF238:-0.857332239264;GTF2A1,2:-0.915329369397;TFAP4:-0.964223158419;PPARG:-1.0979349371;VSX1,2:-1.14421085951;NANOG{mouse}:-1.16269438879;ALX1:-1.19126312455;MTF1:-1.20268545417;NHLH1,2:-1.2484362641;HMX1:-1.45545954043 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10494-107B8;search_select_hide=table117:FF:10494-107B8 | |||
}} | }} | ||
Latest revision as of 14:27, 3 June 2020
| Name: | mesothelioma cell line:ACC-MESO-4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11264 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11264
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11264
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.985 |
| 10 | 10 | 0.289 |
| 100 | 100 | 0.364 |
| 101 | 101 | 0.818 |
| 102 | 102 | 0.498 |
| 103 | 103 | 0.179 |
| 104 | 104 | 0.878 |
| 105 | 105 | 0.769 |
| 106 | 106 | 0.73 |
| 107 | 107 | 0.211 |
| 108 | 108 | 0.864 |
| 109 | 109 | 0.924 |
| 11 | 11 | 0.531 |
| 110 | 110 | 0.18 |
| 111 | 111 | 0.107 |
| 112 | 112 | 0.263 |
| 113 | 113 | 0.0809 |
| 114 | 114 | 0.215 |
| 115 | 115 | 0.741 |
| 116 | 116 | 0.79 |
| 117 | 117 | 0.991 |
| 118 | 118 | 0.57 |
| 119 | 119 | 0.761 |
| 12 | 12 | 0.583 |
| 120 | 120 | 0.593 |
| 121 | 121 | 0.566 |
| 122 | 122 | 0.874 |
| 123 | 123 | 0.139 |
| 124 | 124 | 0.765 |
| 125 | 125 | 0.154 |
| 126 | 126 | 0.482 |
| 127 | 127 | 0.404 |
| 128 | 128 | 0.995 |
| 129 | 129 | 0.543 |
| 13 | 13 | 0.0939 |
| 130 | 130 | 0.368 |
| 131 | 131 | 0.893 |
| 132 | 132 | 0.544 |
| 133 | 133 | 0.0107 |
| 134 | 134 | 0.777 |
| 135 | 135 | 0.00541 |
| 136 | 136 | 0.112 |
| 137 | 137 | 0.0249 |
| 138 | 138 | 0.568 |
| 139 | 139 | 0.00826 |
| 14 | 14 | 0.486 |
| 140 | 140 | 0.0967 |
| 141 | 141 | 0.504 |
| 142 | 142 | 0.876 |
| 143 | 143 | 0.0256 |
| 144 | 144 | 0.714 |
| 145 | 145 | 0.885 |
| 146 | 146 | 0.746 |
| 147 | 147 | 0.618 |
| 148 | 148 | 0.964 |
| 149 | 149 | 0.311 |
| 15 | 15 | 0.323 |
| 150 | 150 | 0.0277 |
| 151 | 151 | 0.594 |
| 152 | 152 | 0.00732 |
| 153 | 153 | 0.126 |
| 154 | 154 | 0.762 |
| 155 | 155 | 0.56 |
| 156 | 156 | 0.521 |
| 157 | 157 | 0.156 |
| 158 | 158 | 0.251 |
| 159 | 159 | 0.902 |
| 16 | 16 | 0.548 |
| 160 | 160 | 0.806 |
| 161 | 161 | 0.534 |
| 162 | 162 | 0.773 |
| 163 | 163 | 0.353 |
| 164 | 164 | 0.47 |
| 165 | 165 | 0.052 |
| 166 | 166 | 0.454 |
| 167 | 167 | 0.134 |
| 168 | 168 | 0.0435 |
| 169 | 169 | 0.257 |
| 17 | 17 | 0.956 |
| 18 | 18 | 0.268 |
| 19 | 19 | 0.0977 |
| 2 | 2 | 0.974 |
| 20 | 20 | 0.129 |
| 21 | 21 | 0.38 |
| 22 | 22 | 0.597 |
| 23 | 23 | 0.326 |
| 24 | 24 | 0.737 |
| 25 | 25 | 0.269 |
| 26 | 26 | 0.837 |
| 27 | 27 | 0.192 |
| 28 | 28 | 0.106 |
| 29 | 29 | 0.923 |
| 3 | 3 | 0.734 |
| 30 | 30 | 0.626 |
| 31 | 31 | 0.159 |
| 32 | 32 | 0.173 |
| 33 | 33 | 0.4 |
| 34 | 34 | 0.756 |
| 35 | 35 | 0.184 |
| 36 | 36 | 0.246 |
| 37 | 37 | 0.659 |
| 38 | 38 | 0.817 |
| 39 | 39 | 0.261 |
| 4 | 4 | 0.612 |
| 40 | 40 | 0.811 |
| 41 | 41 | 1.94563e-4 |
| 42 | 42 | 0.608 |
| 43 | 43 | 0.217 |
| 44 | 44 | 0.0258 |
| 45 | 45 | 0.459 |
| 46 | 46 | 0.266 |
| 47 | 47 | 0.973 |
| 48 | 48 | 0.928 |
| 49 | 49 | 0.25 |
| 5 | 5 | 0.153 |
| 50 | 50 | 0.792 |
| 51 | 51 | 0.722 |
| 52 | 52 | 0.419 |
| 53 | 53 | 0.579 |
| 54 | 54 | 0.934 |
| 55 | 55 | 0.5 |
| 56 | 56 | 0.605 |
| 57 | 57 | 0.25 |
| 58 | 58 | 0.0413 |
| 59 | 59 | 0.617 |
| 6 | 6 | 0.849 |
| 60 | 60 | 0.302 |
| 61 | 61 | 0.451 |
| 62 | 62 | 0.0455 |
| 63 | 63 | 0.941 |
| 64 | 64 | 0.928 |
| 65 | 65 | 0.211 |
| 66 | 66 | 0.021 |
| 67 | 67 | 0.727 |
| 68 | 68 | 0.433 |
| 69 | 69 | 0.792 |
| 7 | 7 | 0.495 |
| 70 | 70 | 0.9 |
| 71 | 71 | 0.484 |
| 72 | 72 | 0.896 |
| 73 | 73 | 0.19 |
| 74 | 74 | 0.592 |
| 75 | 75 | 0.522 |
| 76 | 76 | 0.882 |
| 77 | 77 | 0.0981 |
| 78 | 78 | 0.302 |
| 79 | 79 | 0.375 |
| 8 | 8 | 0.169 |
| 80 | 80 | 0.176 |
| 81 | 81 | 0.484 |
| 82 | 82 | 0.176 |
| 83 | 83 | 0.0585 |
| 84 | 84 | 0.355 |
| 85 | 85 | 0.282 |
| 86 | 86 | 0.643 |
| 87 | 87 | 0.0287 |
| 88 | 88 | 0.622 |
| 89 | 89 | 0.92 |
| 9 | 9 | 0.336 |
| 90 | 90 | 0.516 |
| 91 | 91 | 0.109 |
| 92 | 92 | 0.111 |
| 93 | 93 | 0.578 |
| 94 | 94 | 0.503 |
| 95 | 95 | 0.661 |
| 96 | 96 | 0.37 |
| 97 | 97 | 0.2 |
| 98 | 98 | 0.0705 |
| 99 | 99 | 0.497 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11264
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102219 adrenocortical carcinoma cell
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000150 (glandular epithelial cell)
0000163 (endocrine cell)
0000215 (barrier cell)
0000174 (steroid hormone secreting cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
0002097 (cortical cell of adrenal gland)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002369 (adrenal gland)
0002100 (trunk)
0001851 (cortex)
0001235 (adrenal cortex)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102219 (adrenocortical carcinoma cell)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
