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(Created page with "{{f5samples |id=FF:10514-107E1 |name=melanoma cell line:COLO 679, biol_rep1 |sample_id=10514 |rna_tube_id=107E1 |rna_box=107 |rna_position=E1 |sample_cell_lot= |sample...")
 
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{{f5samples
{{f5samples
|id=FF:10514-107E1
|DRA_sample_Accession=CAGE@SAMD00005005
|name=melanoma cell line:COLO 679, biol_rep1
|accession_numbers=CAGE;DRX007930;DRR008802;DRZ000227;DRZ001612;DRZ011577;DRZ012962
|sample_id=10514
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|rna_tube_id=107E1
|rna_box=107
|rna_position=E1
|sample_cell_lot=
|sample_cell_catalog=RCB0989
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=47
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.10000
|rna_od260/280=2.07000
|sample_cell_type=melanocyte
|sample_cell_line=COLO 679
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=melanoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=62.37925
|rna_concentration=2.49517
|sample_note=
|profile_hcage=CNhs11281,LSID759,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001003,UBERON:0001062,UBERON:0002050,UBERON:0002097,UBERON:0002199,UBERON:0002416,UBERON:0002532,UBERON:0003102,UBERON:0004121,UBERON:0005423,UBERON:0007376,UBERON:0007383
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1909
|ancestors_in_disease_facet=DOID:4,DOID:7
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100849
|sample_description=
|comment=
 
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.43!400.51!IFI16;;chr22:38380543..38380569,-!p1@SOX10!2.41!257.80!SOX10;;chr3:69985734..69985749,+!p2@MITF!2.17!145.58!MITF;;chr2:223163706..223163730,-!p1@PAX3!1.84!67.48!PAX3;;chr1:158985553..158985574,+!p14@IFI16!1.74!53.53!IFI16;;chr1:158975744..158975769,+!p10@IFI16!1.71!50.04!IFI16;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!50.35!TFAP2A;;chr1:158985457..158985468,+!p12@IFI16!1.58!36.70!IFI16;;chr3:69985792..69985803,+!p7@MITF!1.57!35.94!MITF;;chr20:50179368..50179392,-!p2@NFATC2!1.53!42.16!NFATC2;;chr1:158985469..158985489,+!p7@IFI16!1.53!38.82!IFI16;;chr15:42749722..42749739,-!p2@ZFP106!1.50!54.14!ZFP106;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.51!ZBED1;;chr11:125034640..125034655,+!p1@PKNOX2!1.42!25.33!PKNOX2;;chr17:41622925..41622976,-!p3@ETV4!1.40!35.64!ETV4;;chr10:111987079..111987115,+!p3@MXI1!1.37!30.78!MXI1;;chr6:391743..391759,+!p1@IRF4!1.36!21.69!IRF4;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.33!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.31!19.41!EN2;;chr1:158985536..158985545,+!p18@IFI16!1.31!19.41!IFI16;;chr7:27179814..27179840,-!p4@HOXA3!1.30!19.11!HOXA3;;chr9:73029219..73029289,-!p2@KLF9!1.29!55.20!KLF9;;chr8:22550982..22550999,-!p1@EGR3!1.26!48.22!EGR3;;chr6:10412392..10412409,-!p4@TFAP2A!1.25!19.11!TFAP2A;;chr17:59477233..59477263,+!p1@TBX2!1.24!50.50!TBX2;;chr1:25256756..25256774,-!p1@RUNX3!1.22!29.27!RUNX3;;chr13:46626764..46626775,-!p16@ZC3H13!1.22!15.62!ZC3H13;;chr11:120107344..120107351,+!p1@POU2F3!1.20!17.89!POU2F3;;chr2:172949484..172949522,+!p1@DLX1!1.20!14.86!DLX1;;chr7:27183291..27183324,-!p1@HOXA5!1.20!14.86!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!1.20!14.71!HOXA5;;chr1:63788229..63788250,+!p1@FOXD3!1.18!14.26!FOXD3;;chr12:66218598..66218645,+!p2@HMGA2!1.17!62.93!HMGA2;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.50!GATA4;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.19!TFAP2A;;chr20:50179584..50179611,-!p6@NFATC2!1.14!12.89!NFATC2;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.44!HOXD8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.11!11.83!HOXC5;;chr12:66218836..66218888,+!p1@HMGA2!1.08!102.67!HMGA2;;chr1:158969752..158969780,+!p6@IFI16!1.07!18.65!IFI16;;chr3:185826855..185826911,-!p1@ETV5!1.06!286.62!ETV5;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.41!HOXB7;;chr13:46626794..46626801,-!p17@ZC3H13!1.04!10.01!ZC3H13;;chr1:120190786..120190915,-!p1@ZNF697!1.03!71.88!ZNF697;;chr14:75988771..75988826,+!p1@BATF!1.01!12.28!BATF;;chr11:125034605..125034636,+!p2@PKNOX2!1.01!9.25!PKNOX2;;chr12:52445218..52445237,+!p1@NR4A1!1.00!116.31!NR4A1;;chr2:172967621..172967637,-!p1@DLX2!1.00!24.87!DLX2;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.95!HOXB6;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.65!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.98!121.02!PCBP4;;chr15:80696703..80696754,+!p1@ARNT2!0.98!11.53!ARNT2;;chr13:46626824..46626835,-!p8@ZC3H13!0.97!10.62!ZC3H13;;chr6:29648890..29648944,-!p1@ZFP57!0.96!8.19!ZFP57;;chr12:85673977..85674015,+!p1@ALX1!0.96!8.04!ALX1;;chr1:158985686..158985719,+!p15@IFI16!0.96!8.04!IFI16;;chr5:88178983..88179012,-!p1@MEF2C!0.95!63.24!MEF2C;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.89!HOXA3;;chr7:27179852..27179863,-!p10@HOXA3!0.94!7.73!HOXA3;;chr12:57914286..57914304,-!p1@DDIT3!0.90!265.84!DDIT3;;chr17:59477275..59477286,+!p3@TBX2!0.90!9.40!TBX2;;chr17:46703687..46703740,-!p1@HOXB9!0.89!6.82!HOXB9;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr22:22874610..22874616,-!p1@ZNF280A!0.88!6.67!ZNF280A;;chr11:16133391..16133439,-!p6@SOX6!0.88!6.67!SOX6;;chr21:34398234..34398250,+!p1@OLIG2!0.87!6.37!OLIG2;;chr2:172950227..172950249,+!p2@DLX1!0.86!6.22!DLX1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.58!RARG;;chr3:25470062..25470084,+!p4@RARB!0.85!6.07!RARB;;chr17:70117153..70117174,+!p1@SOX9!0.84!64.75!SOX9;;chr2:239148671..239148686,-!p1@HES6!0.84!22.90!HES6;;chr3:52001426..52001447,-!p3@PCBP4!0.84!17.74!PCBP4;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.83!HOXA1;;chr8:80679993..80680011,-!p1@HEY1!0.84!8.80!HEY1;;chr17:46622205..46622218,-!p3@HOXB2!0.84!6.98!HOXB2;;chr2:85987839..85987846,+!p20@ATOH8!0.84!5.91!ATOH8;;chr9:73028598..73028617,-!p5@KLF9!0.83!10.31!KLF9;;chr17:46703212..46703238,-!p2@HOXB9!0.83!5.76!HOXB9;;chr2:145277640..145277771,-!p1@ZEB2!0.82!80.83!ZEB2;;chr6:126102292..126102329,+!p3@NCOA7!0.82!19.71!NCOA7;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.07!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.82!6.98!ETV4;;chr16:67198633..67198671,+!p1@HSF4!0.82!5.61!HSF4;;chr12:54402745..54402788,+!p1@HOXC8!0.82!5.61!HOXC8;;chr9:73028814..73028895,-!p1@KLF9!0.81!57.93!KLF9;;chr17:41623692..41623715,-!p1@ETV4!0.81!25.17!ETV4;;chr5:321810..321877,+!p1@AHRR!0.81!18.50!AHRR;;chr21:30671690..30671762,+!p2@BACH1!0.80!19.26!BACH1;;chr12:66218212..66218244,+!p5@HMGA2!0.80!8.04!HMGA2;;chr12:54447637..54447659,+!p4@HOXC4!0.80!5.31!HOXC4;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.28!HOXB7;;chr11:16629261..16629284,-!p1@SOX6!0.79!5.16!SOX6;;chr12:6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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=FF:0100849
|fonse_cell_line=FF:0100849
|fonse_cell_line_closure=FF:0100849
|fonse_cell_line_closure=FF:0100849
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aCOLO%2520679.CNhs11281.10514-107E1.hg38.nobarcode.ctss.bed.gz
|id=FF:10514-107E1
|is_a=EFO:0002091;;FF:0000210;;FF:0100849
|is_obsolete=
|library_id=CNhs11281
|library_id_phase_based=2:CNhs11281
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10514
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10514
|name=melanoma cell line:COLO 679
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11281,LSID759,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=107
|rna_catalog_number=
|rna_concentration=2.49517
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.1
|rna_od260/280=2.07
|rna_position=E1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.07E+03
|rna_weight_ug=62.37925
|sample_age=47
|sample_category=cell lines
|sample_cell_catalog=RCB0989
|sample_cell_line=COLO 679
|sample_cell_lot=
|sample_cell_type=melanocyte
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=melanoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.07810743422543e-271!GO:0043231;intracellular membrane-bound organelle;3.71256399810147e-225!GO:0043226;organelle;4.33792750058282e-225!GO:0043227;membrane-bound organelle;4.33792750058282e-225!GO:0043229;intracellular organelle;1.51402163349484e-224!GO:0005737;cytoplasm;3.2869383528691e-203!GO:0044422;organelle part;1.06776587580741e-161!GO:0044446;intracellular organelle part;2.68306716876363e-160!GO:0044444;cytoplasmic part;6.3230272258708e-152!GO:0032991;macromolecular complex;4.9357306449507e-112!GO:0044237;cellular metabolic process;4.12363207889491e-102!GO:0044238;primary metabolic process;1.25960799556321e-100!GO:0043170;macromolecule metabolic process;3.67321628957999e-90!GO:0030529;ribonucleoprotein complex;9.2629018981212e-89!GO:0005634;nucleus;8.30466525487384e-87!GO:0005739;mitochondrion;3.16175400814791e-84!GO:0043233;organelle lumen;4.02767770844147e-84!GO:0031974;membrane-enclosed lumen;4.02767770844147e-84!GO:0003723;RNA binding;3.38510158377957e-78!GO:0044428;nuclear part;1.2325019616659e-77!GO:0005515;protein binding;4.70176290052465e-66!GO:0043234;protein complex;6.38397317204709e-59!GO:0044429;mitochondrial part;1.78779905274901e-57!GO:0031090;organelle membrane;1.45899890722038e-56!GO:0006396;RNA processing;2.24315047797871e-53!GO:0043283;biopolymer metabolic process;2.94163836489151e-53!GO:0006412;translation;2.94163836489151e-53!GO:0005840;ribosome;2.99821695502091e-53!GO:0033036;macromolecule localization;2.82576475139987e-51!GO:0015031;protein transport;4.37401551336263e-51!GO:0016043;cellular component organization and biogenesis;4.37401551336263e-51!GO:0019538;protein metabolic process;6.42069210790515e-50!GO:0031967;organelle envelope;1.57112003061943e-49!GO:0031975;envelope;4.40907886185285e-49!GO:0009058;biosynthetic process;6.66512456819462e-48!GO:0008104;protein localization;7.71788304970539e-47!GO:0031981;nuclear lumen;7.71788304970539e-47!GO:0045184;establishment of protein localization;2.10881524776333e-46!GO:0044249;cellular biosynthetic process;3.59445764752963e-46!GO:0003735;structural constituent of ribosome;1.08234237648847e-45!GO:0010467;gene expression;1.30400643125922e-45!GO:0044260;cellular macromolecule metabolic process;7.34194529315365e-45!GO:0044267;cellular protein metabolic process;2.405724553927e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.9636467798839e-43!GO:0009059;macromolecule biosynthetic process;3.00703376087516e-42!GO:0046907;intracellular transport;1.57498794473735e-41!GO:0033279;ribosomal subunit;8.26654262924866e-40!GO:0006996;organelle organization and biogenesis;1.21969328879172e-39!GO:0016071;mRNA metabolic process;5.32891262565527e-39!GO:0005829;cytosol;2.86930952758768e-37!GO:0005740;mitochondrial envelope;1.49984202622391e-35!GO:0043228;non-membrane-bound organelle;1.98620646525693e-35!GO:0043232;intracellular non-membrane-bound organelle;1.98620646525693e-35!GO:0008380;RNA splicing;2.297596326586e-35!GO:0006886;intracellular protein transport;3.85726574598428e-35!GO:0019866;organelle inner membrane;2.45818495050668e-34!GO:0065003;macromolecular complex assembly;3.53418767952617e-34!GO:0031966;mitochondrial membrane;8.57447478796298e-34!GO:0006397;mRNA processing;3.15360460215734e-33!GO:0005743;mitochondrial inner membrane;1.16831304634032e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.40291240212488e-32!GO:0003676;nucleic acid binding;4.60224480554749e-32!GO:0022607;cellular component assembly;7.45426165995009e-31!GO:0048770;pigment granule;9.06970321935432e-31!GO:0042470;melanosome;9.06970321935432e-31!GO:0006259;DNA metabolic process;6.39245578175471e-30!GO:0000166;nucleotide binding;2.64002860849497e-29!GO:0005654;nucleoplasm;3.22841915417267e-29!GO:0051649;establishment of cellular localization;3.06763766314659e-28!GO:0051641;cellular localization;2.63117088982865e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.28652281636367e-27!GO:0031980;mitochondrial lumen;7.16805425014976e-27!GO:0005759;mitochondrial matrix;7.16805425014976e-27!GO:0007049;cell cycle;2.34904015423872e-26!GO:0006119;oxidative phosphorylation;4.70368074664626e-26!GO:0005681;spliceosome;4.70368074664626e-26!GO:0044455;mitochondrial membrane part;7.5575905919059e-25!GO:0044451;nucleoplasm part;9.68553155004636e-24!GO:0016462;pyrophosphatase activity;1.52355290087884e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.06082739039369e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.46633352354315e-22!GO:0012505;endomembrane system;4.57132439575972e-22!GO:0044445;cytosolic part;6.24048100322994e-22!GO:0017111;nucleoside-triphosphatase activity;1.39890352639223e-21!GO:0016070;RNA metabolic process;1.71240699654762e-21!GO:0016874;ligase activity;2.86676304537533e-21!GO:0015935;small ribosomal subunit;4.92418413596184e-21!GO:0032553;ribonucleotide binding;8.98509687166939e-21!GO:0032555;purine ribonucleotide binding;8.98509687166939e-21!GO:0017076;purine nucleotide binding;1.77509429539395e-20!GO:0022402;cell cycle process;3.95789789875779e-20!GO:0006512;ubiquitin cycle;6.15114365881592e-20!GO:0015934;large ribosomal subunit;8.13412970852591e-20!GO:0006457;protein folding;9.77382329127623e-20!GO:0044265;cellular macromolecule catabolic process;4.76559430516772e-19!GO:0000278;mitotic cell cycle;5.89744357051758e-19!GO:0005746;mitochondrial respiratory chain;6.67268325287828e-19!GO:0005730;nucleolus;8.42204646514453e-19!GO:0022618;protein-RNA complex assembly;1.43176056221064e-18!GO:0051186;cofactor metabolic process;3.00774012554836e-18!GO:0005783;endoplasmic reticulum;1.09056628144558e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.10773032270996e-17!GO:0006605;protein targeting;1.15450019933787e-17!GO:0032559;adenyl ribonucleotide binding;1.81478931963821e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.01252629019014e-17!GO:0019941;modification-dependent protein catabolic process;2.24864629981406e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.24864629981406e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.55244161693491e-17!GO:0005524;ATP binding;2.95755970392932e-17!GO:0044257;cellular protein catabolic process;3.84833269912656e-17!GO:0044248;cellular catabolic process;4.65993897866497e-17!GO:0030554;adenyl nucleotide binding;4.78862123839841e-17!GO:0043285;biopolymer catabolic process;5.21403660597555e-17!GO:0005694;chromosome;9.075858172826e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.05211682277788e-16!GO:0003954;NADH dehydrogenase activity;1.05211682277788e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.05211682277788e-16!GO:0005761;mitochondrial ribosome;1.12687305594036e-16!GO:0000313;organellar ribosome;1.12687305594036e-16!GO:0008135;translation factor activity, nucleic acid binding;2.36143893679051e-16!GO:0009057;macromolecule catabolic process;2.38050746342548e-16!GO:0000087;M phase of mitotic cell cycle;2.51844139514781e-16!GO:0007067;mitosis;6.72138326593168e-16!GO:0043412;biopolymer modification;9.74479555992021e-16!GO:0051276;chromosome organization and biogenesis;1.06592312584495e-15!GO:0006974;response to DNA damage stimulus;1.21772929888013e-15!GO:0008134;transcription factor binding;1.49201914620228e-15!GO:0006732;coenzyme metabolic process;1.86272749452823e-15!GO:0042775;organelle ATP synthesis coupled electron transport;4.70106277670561e-15!GO:0042773;ATP synthesis coupled electron transport;4.70106277670561e-15!GO:0044427;chromosomal part;1.01884497329784e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.13795365367238e-14!GO:0045271;respiratory chain complex I;1.13795365367238e-14!GO:0005747;mitochondrial respiratory chain complex I;1.13795365367238e-14!GO:0044432;endoplasmic reticulum part;1.35917433908384e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.36209038596302e-14!GO:0030163;protein catabolic process;1.43187625414644e-14!GO:0005635;nuclear envelope;1.54031731569394e-14!GO:0042254;ribosome biogenesis and assembly;1.65446877181997e-14!GO:0051082;unfolded protein binding;3.11255202237083e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.2247658926275e-14!GO:0016887;ATPase activity;3.369562289128e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.86457891570655e-14!GO:0051301;cell division;4.97295130225067e-14!GO:0022403;cell cycle phase;7.83809783593871e-14!GO:0042623;ATPase activity, coupled;8.54028134070426e-14!GO:0031965;nuclear membrane;8.60082673248915e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.01060049905272e-13!GO:0006464;protein modification process;1.21838873033374e-13!GO:0005794;Golgi apparatus;1.51229679602015e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.53898323765116e-13!GO:0006399;tRNA metabolic process;4.65008794685358e-13!GO:0006281;DNA repair;5.34874620675145e-13!GO:0006366;transcription from RNA polymerase II promoter;6.9932499356573e-13!GO:0000279;M phase;7.21844843892878e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.21624558072239e-12!GO:0003743;translation initiation factor activity;2.36333145897002e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.63909742069669e-12!GO:0000375;RNA splicing, via transesterification reactions;2.63909742069669e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.63909742069669e-12!GO:0044453;nuclear membrane part;3.0555774776842e-12!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.09792660972305e-12!GO:0006323;DNA packaging;4.43014204312877e-12!GO:0048193;Golgi vesicle transport;4.73705757792703e-12!GO:0006413;translational initiation;7.24144749980289e-12!GO:0006913;nucleocytoplasmic transport;9.67562546109458e-12!GO:0016192;vesicle-mediated transport;1.05336455062095e-11!GO:0051726;regulation of cell cycle;1.74439789954793e-11!GO:0051169;nuclear transport;1.79401463697193e-11!GO:0043687;post-translational protein modification;2.06798897442122e-11!GO:0000074;regulation of progression through cell cycle;3.1759397878574e-11!GO:0006446;regulation of translational initiation;3.1953674704592e-11!GO:0008565;protein transporter activity;3.45005106998974e-11!GO:0008639;small protein conjugating enzyme activity;3.45786371231618e-11!GO:0006403;RNA localization;4.30131983008344e-11!GO:0050657;nucleic acid transport;4.44866361723385e-11!GO:0051236;establishment of RNA localization;4.44866361723385e-11!GO:0050658;RNA transport;4.44866361723385e-11!GO:0007005;mitochondrion organization and biogenesis;4.88023417410727e-11!GO:0045333;cellular respiration;5.22989975592854e-11!GO:0004386;helicase activity;5.36262820083211e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.84935497331433e-11!GO:0065002;intracellular protein transport across a membrane;6.15879814503869e-11!GO:0006260;DNA replication;6.63859003584086e-11!GO:0009056;catabolic process;7.11727368962003e-11!GO:0004842;ubiquitin-protein ligase activity;7.58325822794303e-11!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.53791771712238e-11!GO:0006461;protein complex assembly;8.72827886637648e-11!GO:0003712;transcription cofactor activity;9.47397556017421e-11!GO:0051188;cofactor biosynthetic process;1.05130592304721e-10!GO:0005643;nuclear pore;1.10071142388356e-10!GO:0006163;purine nucleotide metabolic process;1.12309467617541e-10!GO:0005789;endoplasmic reticulum membrane;1.43315422385733e-10!GO:0009259;ribonucleotide metabolic process;1.5138705076165e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.6614826261315e-10!GO:0019787;small conjugating protein ligase activity;1.87599433902082e-10!GO:0009060;aerobic respiration;2.56808343191405e-10!GO:0016604;nuclear body;2.86109635480581e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.99536505987982e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.99536505987982e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.99536505987982e-10!GO:0015630;microtubule cytoskeleton;3.63699307164522e-10!GO:0015986;ATP synthesis coupled proton transport;3.69643149885923e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.69643149885923e-10!GO:0009150;purine ribonucleotide metabolic process;4.04181123110813e-10!GO:0006164;purine nucleotide biosynthetic process;5.89729227395078e-10!GO:0043038;amino acid activation;6.04239369014145e-10!GO:0006418;tRNA aminoacylation for protein translation;6.04239369014145e-10!GO:0043039;tRNA aminoacylation;6.04239369014145e-10!GO:0009719;response to endogenous stimulus;6.62207429022351e-10!GO:0015078;hydrogen ion transmembrane transporter activity;7.24038904347064e-10!GO:0009055;electron carrier activity;8.84809295443351e-10!GO:0005768;endosome;1.00173073013431e-09!GO:0019829;cation-transporting ATPase activity;1.32027435502977e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.5248487080569e-09!GO:0009260;ribonucleotide biosynthetic process;1.67034755259282e-09!GO:0006364;rRNA processing;1.70163574272678e-09!GO:0008026;ATP-dependent helicase activity;2.02070766355785e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.06369101722298e-09!GO:0006099;tricarboxylic acid cycle;2.2209039480647e-09!GO:0046356;acetyl-CoA catabolic process;2.2209039480647e-09!GO:0016469;proton-transporting two-sector ATPase complex;2.33280519271741e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.69114166744663e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.69114166744663e-09!GO:0016607;nuclear speck;3.26323467481962e-09!GO:0009141;nucleoside triphosphate metabolic process;3.40222711238901e-09!GO:0005773;vacuole;3.80102665017754e-09!GO:0016072;rRNA metabolic process;4.02666025525594e-09!GO:0051028;mRNA transport;4.11415993048872e-09!GO:0006084;acetyl-CoA metabolic process;4.41866618667814e-09!GO:0012501;programmed cell death;4.55130892759295e-09!GO:0046034;ATP metabolic process;4.6434821153223e-09!GO:0009108;coenzyme biosynthetic process;4.64580062851999e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.70777306704129e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.70777306704129e-09!GO:0046930;pore complex;4.71644195720152e-09!GO:0006915;apoptosis;4.78350932105923e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.32871704410322e-09!GO:0065004;protein-DNA complex assembly;6.80944070529153e-09!GO:0017038;protein import;6.8260055984579e-09!GO:0000785;chromatin;7.05208054821153e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.25657630306111e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.28023006296969e-09!GO:0016881;acid-amino acid ligase activity;7.57343198168307e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.56501815511651e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.56501815511651e-09!GO:0006333;chromatin assembly or disassembly;9.04200925464611e-09!GO:0006754;ATP biosynthetic process;1.03566101211334e-08!GO:0006753;nucleoside phosphate metabolic process;1.03566101211334e-08!GO:0031982;vesicle;1.71756545078248e-08!GO:0016568;chromatin modification;1.90355733112986e-08!GO:0031988;membrane-bound vesicle;2.31696624053352e-08!GO:0050794;regulation of cellular process;2.55441055495361e-08!GO:0005793;ER-Golgi intermediate compartment;2.7908951808551e-08!GO:0031410;cytoplasmic vesicle;2.86909518246017e-08!GO:0009109;coenzyme catabolic process;2.89718994833878e-08!GO:0016023;cytoplasmic membrane-bound vesicle;3.50525389742944e-08!GO:0000323;lytic vacuole;4.67501965741777e-08!GO:0005764;lysosome;4.67501965741777e-08!GO:0008219;cell death;4.7547709498625e-08!GO:0016265;death;4.7547709498625e-08!GO:0032446;protein modification by small protein conjugation;4.94169912865984e-08!GO:0005667;transcription factor complex;5.99769264480637e-08!GO:0008654;phospholipid biosynthetic process;6.05766492031169e-08!GO:0016567;protein ubiquitination;7.21787886157423e-08!GO:0030532;small nuclear ribonucleoprotein complex;8.5536598306275e-08!GO:0009117;nucleotide metabolic process;9.20151470941911e-08!GO:0016740;transferase activity;1.2708577968406e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.74477987091772e-07!GO:0016779;nucleotidyltransferase activity;2.07684981552451e-07!GO:0005813;centrosome;2.8406001808896e-07!GO:0005798;Golgi-associated vesicle;3.06856740553141e-07!GO:0051187;cofactor catabolic process;3.11389932721278e-07!GO:0043623;cellular protein complex assembly;3.26404288508661e-07!GO:0016563;transcription activator activity;3.2832881920444e-07!GO:0005819;spindle;3.81799982473552e-07!GO:0006752;group transfer coenzyme metabolic process;3.83506952445866e-07!GO:0048523;negative regulation of cellular process;4.37225442508831e-07!GO:0051246;regulation of protein metabolic process;4.51464987035178e-07!GO:0016787;hydrolase activity;5.08490713201511e-07!GO:0043566;structure-specific DNA binding;5.16645492921942e-07!GO:0016853;isomerase activity;5.53043851326233e-07!GO:0005770;late endosome;5.55923878932981e-07!GO:0005815;microtubule organizing center;5.84331081320729e-07!GO:0048475;coated membrane;6.26548361722228e-07!GO:0030117;membrane coat;6.26548361722228e-07!GO:0045259;proton-transporting ATP synthase complex;7.29696024788543e-07!GO:0015980;energy derivation by oxidation of organic compounds;7.68885751582489e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.52048738366157e-07!GO:0045786;negative regulation of progression through cell cycle;1.19144262286724e-06!GO:0030120;vesicle coat;1.20384849334753e-06!GO:0030662;coated vesicle membrane;1.20384849334753e-06!GO:0006793;phosphorus metabolic process;1.24096218086084e-06!GO:0006796;phosphate metabolic process;1.24096218086084e-06!GO:0000151;ubiquitin ligase complex;1.57372977909567e-06!GO:0003697;single-stranded DNA binding;1.86672576846997e-06!GO:0016491;oxidoreductase activity;2.08860869137981e-06!GO:0044440;endosomal part;2.4206494065884e-06!GO:0010008;endosome membrane;2.4206494065884e-06!GO:0019899;enzyme binding;2.59318346150142e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.77830966092484e-06!GO:0003713;transcription coactivator activity;2.92520994548042e-06!GO:0006334;nucleosome assembly;2.93314259345124e-06!GO:0000245;spliceosome assembly;3.02343057923111e-06!GO:0051170;nuclear import;3.73689282385914e-06!GO:0046474;glycerophospholipid biosynthetic process;4.07289738121999e-06!GO:0044431;Golgi apparatus part;4.12409695318982e-06!GO:0000314;organellar small ribosomal subunit;4.35145738933639e-06!GO:0005763;mitochondrial small ribosomal subunit;4.35145738933639e-06!GO:0031497;chromatin assembly;4.43022186501857e-06!GO:0003924;GTPase activity;4.50754883492962e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.59042791121144e-06!GO:0005788;endoplasmic reticulum lumen;5.95990856148207e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.73730224897673e-06!GO:0006091;generation of precursor metabolites and energy;7.82546388624266e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.03889866492369e-05!GO:0006626;protein targeting to mitochondrion;1.06021322741993e-05!GO:0006606;protein import into nucleus;1.06374873654576e-05!GO:0031252;leading edge;1.09790001226806e-05!GO:0048519;negative regulation of biological process;1.14745967418401e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.21095584793663e-05!GO:0006613;cotranslational protein targeting to membrane;1.27632534607375e-05!GO:0006916;anti-apoptosis;1.27632534607375e-05!GO:0007051;spindle organization and biogenesis;1.27632534607375e-05!GO:0006839;mitochondrial transport;1.31246225883159e-05!GO:0003899;DNA-directed RNA polymerase activity;1.4285999445125e-05!GO:0000775;chromosome, pericentric region;1.56016237177866e-05!GO:0051168;nuclear export;1.71328898299702e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.85591987179189e-05!GO:0015399;primary active transmembrane transporter activity;1.85591987179189e-05!GO:0042981;regulation of apoptosis;1.88589752090677e-05!GO:0005762;mitochondrial large ribosomal subunit;1.92390959479289e-05!GO:0000315;organellar large ribosomal subunit;1.92390959479289e-05!GO:0016564;transcription repressor activity;2.22248301153725e-05!GO:0005525;GTP binding;2.65753595666297e-05!GO:0004298;threonine endopeptidase activity;2.82805764083053e-05!GO:0003724;RNA helicase activity;2.88586569983473e-05!GO:0043067;regulation of programmed cell death;2.88586569983473e-05!GO:0043069;negative regulation of programmed cell death;3.43911929058338e-05!GO:0006261;DNA-dependent DNA replication;3.78055355467236e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.78055355467236e-05!GO:0043021;ribonucleoprotein binding;3.87033210378623e-05!GO:0043066;negative regulation of apoptosis;3.87426494885576e-05!GO:0050789;regulation of biological process;3.87426494885576e-05!GO:0046467;membrane lipid biosynthetic process;4.10501633639368e-05!GO:0016310;phosphorylation;4.33191731377893e-05!GO:0030659;cytoplasmic vesicle membrane;4.49314861894235e-05!GO:0046489;phosphoinositide biosynthetic process;4.75734770938439e-05!GO:0019752;carboxylic acid metabolic process;4.8978018531473e-05!GO:0031324;negative regulation of cellular metabolic process;5.41922947759368e-05!GO:0019222;regulation of metabolic process;5.67390214790047e-05!GO:0051329;interphase of mitotic cell cycle;5.81707337577348e-05!GO:0006082;organic acid metabolic process;5.98851550908809e-05!GO:0030880;RNA polymerase complex;6.00183461921437e-05!GO:0048471;perinuclear region of cytoplasm;6.33914680815024e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.34830958341776e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.43764563518663e-05!GO:0045454;cell redox homeostasis;6.69848506030356e-05!GO:0006383;transcription from RNA polymerase III promoter;6.95996415668977e-05!GO:0009165;nucleotide biosynthetic process;7.3627323556882e-05!GO:0016859;cis-trans isomerase activity;7.59250504279958e-05!GO:0003714;transcription corepressor activity;7.69090011883388e-05!GO:0030867;rough endoplasmic reticulum membrane;8.70481379114883e-05!GO:0008033;tRNA processing;9.22255271335348e-05!GO:0042802;identical protein binding;9.41613879884208e-05!GO:0009892;negative regulation of metabolic process;0.00011521464976669!GO:0003682;chromatin binding;0.000116115117191901!GO:0043681;protein import into mitochondrion;0.000120503454687593!GO:0006612;protein targeting to membrane;0.000122294703727615!GO:0012506;vesicle membrane;0.000123867942940294!GO:0044433;cytoplasmic vesicle part;0.000139783396584915!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000149760407284444!GO:0000428;DNA-directed RNA polymerase complex;0.000149760407284444!GO:0007006;mitochondrial membrane organization and biogenesis;0.000149760407284444!GO:0006650;glycerophospholipid metabolic process;0.000156156708390806!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000165516476955897!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000183532076223317!GO:0051427;hormone receptor binding;0.00018686147773655!GO:0032561;guanyl ribonucleotide binding;0.000199766844040792!GO:0019001;guanyl nucleotide binding;0.000199766844040792!GO:0022890;inorganic cation transmembrane transporter activity;0.000201886515697966!GO:0019867;outer membrane;0.000210362180744137!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000227489772991931!GO:0007088;regulation of mitosis;0.000263933686694959!GO:0044452;nucleolar part;0.000263933686694959!GO:0016251;general RNA polymerase II transcription factor activity;0.000266574062074326!GO:0015631;tubulin binding;0.000271880498710804!GO:0043492;ATPase activity, coupled to movement of substances;0.000274552616538044!GO:0005769;early endosome;0.00027570273471673!GO:0031968;organelle outer membrane;0.000277250794246539!GO:0006414;translational elongation;0.000277250794246539!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000277497958359169!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000305840259999944!GO:0046148;pigment biosynthetic process;0.000309049385605026!GO:0006818;hydrogen transport;0.000318924082939255!GO:0006520;amino acid metabolic process;0.000320974638803726!GO:0051325;interphase;0.000332337064945245!GO:0003690;double-stranded DNA binding;0.000334409800353499!GO:0000075;cell cycle checkpoint;0.000337371320221835!GO:0006402;mRNA catabolic process;0.000348409782889912!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000353037542404604!GO:0035257;nuclear hormone receptor binding;0.000362042794586504!GO:0008250;oligosaccharyl transferase complex;0.000405831034339335!GO:0015992;proton transport;0.000406847726090028!GO:0051789;response to protein stimulus;0.000411022317714559!GO:0006986;response to unfolded protein;0.000411022317714559!GO:0005885;Arp2/3 protein complex;0.000430558915391168!GO:0007010;cytoskeleton organization and biogenesis;0.000473686956456521!GO:0005874;microtubule;0.000475749828079606!GO:0007034;vacuolar transport;0.000484630013086896!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000495612884841785!GO:0003729;mRNA binding;0.000519928161361445!GO:0007093;mitotic cell cycle checkpoint;0.00053480913035651!GO:0000139;Golgi membrane;0.000543757196823663!GO:0000049;tRNA binding;0.000555151150889761!GO:0004576;oligosaccharyl transferase activity;0.000581417781023895!GO:0050662;coenzyme binding;0.000595851295888647!GO:0005048;signal sequence binding;0.000606967910132464!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000606967910132464!GO:0044262;cellular carbohydrate metabolic process;0.000645712438330893!GO:0005741;mitochondrial outer membrane;0.000669555274380672!GO:0016481;negative regulation of transcription;0.000681135953516015!GO:0000059;protein import into nucleus, docking;0.000681135953516015!GO:0006352;transcription initiation;0.000711282063040468!GO:0016363;nuclear matrix;0.000740089280671983!GO:0046983;protein dimerization activity;0.000746621274040881!GO:0008186;RNA-dependent ATPase activity;0.000748011688279785!GO:0042440;pigment metabolic process;0.000820550154999077!GO:0003702;RNA polymerase II transcription factor activity;0.000828632626066826!GO:0033116;ER-Golgi intermediate compartment membrane;0.000829044075820976!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000846851980764188!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000846851980764188!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000846851980764188!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000846851980764188!GO:0006302;double-strand break repair;0.00100635286647933!GO:0051287;NAD binding;0.00102460943844028!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00103093915434798!GO:0000786;nucleosome;0.00105178294247958!GO:0051052;regulation of DNA metabolic process;0.00109559098301652!GO:0030663;COPI coated vesicle membrane;0.00119852756013097!GO:0030126;COPI vesicle coat;0.00119852756013097!GO:0030384;phosphoinositide metabolic process;0.00123605277694666!GO:0007017;microtubule-based process;0.00123605277694666!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00126743633498678!GO:0031970;organelle envelope lumen;0.00126743633498678!GO:0007050;cell cycle arrest;0.00127600650193379!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00128554315608222!GO:0048037;cofactor binding;0.00128987840641097!GO:0005791;rough endoplasmic reticulum;0.00139827965623628!GO:0007052;mitotic spindle organization and biogenesis;0.00143589771017457!GO:0006401;RNA catabolic process;0.00145962621499039!GO:0006643;membrane lipid metabolic process;0.00147102543256294!GO:0048487;beta-tubulin binding;0.00147677309956601!GO:0008094;DNA-dependent ATPase activity;0.00148085262911904!GO:0006497;protein amino acid lipidation;0.00151787197543968!GO:0007059;chromosome segregation;0.00159266517145161!GO:0008168;methyltransferase activity;0.00163777572401206!GO:0042158;lipoprotein biosynthetic process;0.00164483715694103!GO:0016741;transferase activity, transferring one-carbon groups;0.00166704361522813!GO:0000287;magnesium ion binding;0.00167472644757101!GO:0031902;late endosome membrane;0.0017006935211999!GO:0065009;regulation of a molecular function;0.0017275881381864!GO:0043284;biopolymer biosynthetic process;0.00175831730526804!GO:0051920;peroxiredoxin activity;0.00177403988572693!GO:0007041;lysosomal transport;0.00177832000701534!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00179233580443429!GO:0005684;U2-dependent spliceosome;0.00183002669031432!GO:0045941;positive regulation of transcription;0.00184389505580089!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0019167038641685!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0019167038641685!GO:0007040;lysosome organization and biogenesis;0.00192681216931314!GO:0005669;transcription factor TFIID complex;0.00197320427552181!GO:0005905;coated pit;0.00198363772195256!GO:0048500;signal recognition particle;0.0020487367566893!GO:0006405;RNA export from nucleus;0.00208125172666546!GO:0004004;ATP-dependent RNA helicase activity;0.00208236410282726!GO:0008022;protein C-terminus binding;0.00216398970191682!GO:0018196;peptidyl-asparagine modification;0.00225636447767446!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00225636447767446!GO:0006506;GPI anchor biosynthetic process;0.00248722130640875!GO:0006891;intra-Golgi vesicle-mediated transport;0.00249448232263985!GO:0045893;positive regulation of transcription, DNA-dependent;0.00251065025698643!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00251087990239587!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00251538807774901!GO:0030658;transport vesicle membrane;0.00255701486237278!GO:0000776;kinetochore;0.00264224927671665!GO:0016197;endosome transport;0.00264426550342404!GO:0003678;DNA helicase activity;0.00265543480073024!GO:0031072;heat shock protein binding;0.00268096311831416!GO:0006505;GPI anchor metabolic process;0.00268731478478564!GO:0030137;COPI-coated vesicle;0.00278193025530023!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00290812650350756!GO:0003746;translation elongation factor activity;0.00306997915952429!GO:0004167;dopachrome isomerase activity;0.00306997915952429!GO:0005657;replication fork;0.00308557085751901!GO:0051087;chaperone binding;0.00309588076296038!GO:0000096;sulfur amino acid metabolic process;0.00315775645695382!GO:0031323;regulation of cellular metabolic process;0.00330064342829304!GO:0030118;clathrin coat;0.00334487077606845!GO:0007033;vacuole organization and biogenesis;0.00345482679634974!GO:0006611;protein export from nucleus;0.00355124477359712!GO:0051252;regulation of RNA metabolic process;0.00357451689427763!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00375599519733824!GO:0005758;mitochondrial intermembrane space;0.00386843528567173!GO:0004674;protein serine/threonine kinase activity;0.00388715324715591!GO:0030521;androgen receptor signaling pathway;0.00388995155644191!GO:0030176;integral to endoplasmic reticulum membrane;0.00412404632417461!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00417845737725148!GO:0015002;heme-copper terminal oxidase activity;0.00417845737725148!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00417845737725148!GO:0004129;cytochrome-c oxidase activity;0.00417845737725148!GO:0008632;apoptotic program;0.00428126944548451!GO:0005876;spindle microtubule;0.00437504364487119!GO:0030133;transport vesicle;0.00455022925059145!GO:0006338;chromatin remodeling;0.00456113293841355!GO:0006509;membrane protein ectodomain proteolysis;0.00465612496376143!GO:0033619;membrane protein proteolysis;0.00465612496376143!GO:0051539;4 iron, 4 sulfur cluster binding;0.0046807214708574!GO:0016791;phosphoric monoester hydrolase activity;0.00490766054801298!GO:0006672;ceramide metabolic process;0.00518805898326821!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00520047960259972!GO:0045047;protein targeting to ER;0.00520047960259972!GO:0008092;cytoskeletal protein binding;0.00531176449160022!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0053648822191201!GO:0008047;enzyme activator activity;0.00547145384978737!GO:0006595;polyamine metabolic process;0.0055311595025984!GO:0030027;lamellipodium;0.00556370060574951!GO:0048522;positive regulation of cellular process;0.00557108526713804!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00560560659405812!GO:0030660;Golgi-associated vesicle membrane;0.00575490023079438!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00604235104203128!GO:0048154;S100 beta binding;0.0061491154114486!GO:0007243;protein kinase cascade;0.00615643392923094!GO:0008610;lipid biosynthetic process;0.00645477909238733!GO:0006350;transcription;0.0065146338899464!GO:0008312;7S RNA binding;0.0065146338899464!GO:0006644;phospholipid metabolic process;0.00654227287916331!GO:0035258;steroid hormone receptor binding;0.00671561981704076!GO:0016272;prefoldin complex;0.00681931239562059!GO:0000086;G2/M transition of mitotic cell cycle;0.00686187475721752!GO:0006007;glucose catabolic process;0.00706798493600176!GO:0008234;cysteine-type peptidase activity;0.0071638048465852!GO:0008320;protein transmembrane transporter activity;0.00726936757209951!GO:0016584;nucleosome positioning;0.00748495212275208!GO:0008287;protein serine/threonine phosphatase complex;0.00760641782146523!GO:0006417;regulation of translation;0.00782515616215649!GO:0043488;regulation of mRNA stability;0.00787748644497979!GO:0043487;regulation of RNA stability;0.00787748644497979!GO:0030496;midbody;0.00865517682375341!GO:0003684;damaged DNA binding;0.0086793805264661!GO:0043022;ribosome binding;0.00869199556893827!GO:0003711;transcription elongation regulator activity;0.00870962329029859!GO:0032508;DNA duplex unwinding;0.00870962329029859!GO:0032392;DNA geometric change;0.00870962329029859!GO:0001726;ruffle;0.00871421243640767!GO:0045045;secretory pathway;0.0087952446476947!GO:0006519;amino acid and derivative metabolic process;0.00881454717149414!GO:0005774;vacuolar membrane;0.00895492398657096!GO:0000339;RNA cap binding;0.00903542715093747!GO:0031901;early endosome membrane;0.00904261508595241!GO:0046519;sphingoid metabolic process;0.00905059791062668!GO:0030036;actin cytoskeleton organization and biogenesis;0.00923654952209566!GO:0050811;GABA receptor binding;0.00960968478054394!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00965229045514506!GO:0042393;histone binding;0.00984967877736139!GO:0004527;exonuclease activity;0.00985032884204648!GO:0008180;signalosome;0.0101235119769764!GO:0046483;heterocycle metabolic process;0.0103033529338404!GO:0030503;regulation of cell redox homeostasis;0.0103782410347688!GO:0051540;metal cluster binding;0.0106929662181013!GO:0051536;iron-sulfur cluster binding;0.0106929662181013!GO:0004722;protein serine/threonine phosphatase activity;0.0108473697587021!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0112307187192379!GO:0005832;chaperonin-containing T-complex;0.0118867862655004!GO:0005637;nuclear inner membrane;0.0121361966114718!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0122098350989926!GO:0016311;dephosphorylation;0.0128644683490287!GO:0050681;androgen receptor binding;0.0128788436892251!GO:0009451;RNA modification;0.0130785015761624!GO:0045892;negative regulation of transcription, DNA-dependent;0.0131443917669787!GO:0033673;negative regulation of kinase activity;0.0132676994585755!GO:0006469;negative regulation of protein kinase activity;0.0132676994585755!GO:0030518;steroid hormone receptor signaling pathway;0.0137056720125052!GO:0051348;negative regulation of transferase activity;0.0137333750045383!GO:0031647;regulation of protein stability;0.0139140039380698!GO:0004518;nuclease activity;0.0140492010751592!GO:0019843;rRNA binding;0.014058965807212!GO:0032200;telomere organization and biogenesis;0.014097947499436!GO:0000723;telomere maintenance;0.014097947499436!GO:0065007;biological regulation;0.0142529172692221!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0147407165187441!GO:0031326;regulation of cellular biosynthetic process;0.0151139272629722!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0152070228488543!GO:0008017;microtubule binding;0.015226896751406!GO:0033162;melanosome membrane;0.0155375430464579!GO:0045009;chitosome;0.0155375430464579!GO:0019748;secondary metabolic process;0.0155918562397793!GO:0016788;hydrolase activity, acting on ester bonds;0.0160160395743236!GO:0006582;melanin metabolic process;0.0161248058468179!GO:0006583;melanin biosynthetic process from tyrosine;0.0161248058468179!GO:0042438;melanin biosynthetic process;0.0161248058468179!GO:0006289;nucleotide-excision repair;0.0161248058468179!GO:0009003;signal peptidase activity;0.0166180339637848!GO:0006807;nitrogen compound metabolic process;0.0166497313543932!GO:0009308;amine metabolic process;0.0167881620793146!GO:0000209;protein polyubiquitination;0.0168081958539202!GO:0017166;vinculin binding;0.0169705276401395!GO:0005938;cell cortex;0.0169705276401395!GO:0048066;pigmentation during development;0.0169965953399236!GO:0010468;regulation of gene expression;0.017006080005738!GO:0016044;membrane organization and biogenesis;0.0173317360213595!GO:0022411;cellular component disassembly;0.0173666792132159!GO:0009116;nucleoside metabolic process;0.0176730297053957!GO:0030119;AP-type membrane coat adaptor complex;0.0176730297053957!GO:0000097;sulfur amino acid biosynthetic process;0.0176966051667366!GO:0031124;mRNA 3'-end processing;0.0179335167640317!GO:0051128;regulation of cellular component organization and biogenesis;0.017991310004376!GO:0000922;spindle pole;0.0180753566771945!GO:0006661;phosphatidylinositol biosynthetic process;0.0182696625212924!GO:0019887;protein kinase regulator activity;0.0182696625212924!GO:0008361;regulation of cell size;0.0184670780535271!GO:0030508;thiol-disulfide exchange intermediate activity;0.0189647405963621!GO:0009066;aspartate family amino acid metabolic process;0.019570561987909!GO:0006144;purine base metabolic process;0.0197751847051542!GO:0043407;negative regulation of MAP kinase activity;0.0199809903761239!GO:0008139;nuclear localization sequence binding;0.0199809903761239!GO:0004721;phosphoprotein phosphatase activity;0.02026436653336!GO:0044437;vacuolar part;0.020344635153058!GO:0047485;protein N-terminus binding;0.020450475556625!GO:0030131;clathrin adaptor complex;0.020450475556625!GO:0006268;DNA unwinding during replication;0.0212374977183556!GO:0019783;small conjugating protein-specific protease activity;0.0216901323470211!GO:0042026;protein refolding;0.0216901323470211!GO:0022406;membrane docking;0.0217511672800507!GO:0048278;vesicle docking;0.0217511672800507!GO:0050790;regulation of catalytic activity;0.0217996456861455!GO:0019318;hexose metabolic process;0.0220790825323915!GO:0019207;kinase regulator activity;0.0221831067745206!GO:0006275;regulation of DNA replication;0.0226189867182978!GO:0006310;DNA recombination;0.022663122158926!GO:0004448;isocitrate dehydrogenase activity;0.0231330042598542!GO:0000910;cytokinesis;0.0231356892629561!GO:0016790;thiolester hydrolase activity;0.0236899846399979!GO:0006767;water-soluble vitamin metabolic process;0.0236956865571024!GO:0032981;mitochondrial respiratory chain complex I assembly;0.023695845326663!GO:0010257;NADH dehydrogenase complex assembly;0.023695845326663!GO:0033108;mitochondrial respiratory chain complex assembly;0.023695845326663!GO:0005869;dynactin complex;0.0239413854861184!GO:0009070;serine family amino acid biosynthetic process;0.0245104137086667!GO:0007030;Golgi organization and biogenesis;0.0245832465688388!GO:0016408;C-acyltransferase activity;0.0245832465688388!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0247661974971139!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0247661974971139!GO:0000118;histone deacetylase complex;0.0250325535861565!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0256136179183523!GO:0045039;protein import into mitochondrial inner membrane;0.0256136179183523!GO:0006607;NLS-bearing substrate import into nucleus;0.0256136179183523!GO:0004563;beta-N-acetylhexosaminidase activity;0.0256136179183523!GO:0016407;acetyltransferase activity;0.0257546943983462!GO:0004843;ubiquitin-specific protease activity;0.0257850326707007!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0263458671558243!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0263823489423652!GO:0005996;monosaccharide metabolic process;0.0265121458911977!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0268138034582136!GO:0030140;trans-Golgi network transport vesicle;0.0273657486728603!GO:0007021;tubulin folding;0.0274213663654347!GO:0006400;tRNA modification;0.027593400333987!GO:0008652;amino acid biosynthetic process;0.0281986680060205!GO:0007264;small GTPase mediated signal transduction;0.0281986680060205!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0281986680060205!GO:0006376;mRNA splice site selection;0.0284576897021164!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0284576897021164!GO:0006733;oxidoreduction coenzyme metabolic process;0.0285570730603016!GO:0004300;enoyl-CoA hydratase activity;0.0287796192402112!GO:0046488;phosphatidylinositol metabolic process;0.0290371327099667!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0292061586478438!GO:0006984;ER-nuclear signaling pathway;0.0295582807312731!GO:0006904;vesicle docking during exocytosis;0.0298262279619847!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0300254146790145!GO:0006541;glutamine metabolic process;0.0305092743903879!GO:0043624;cellular protein complex disassembly;0.0308135605825047!GO:0030134;ER to Golgi transport vesicle;0.0311085654083383!GO:0008637;apoptotic mitochondrial changes;0.0311517426961692!GO:0009112;nucleobase metabolic process;0.0318334370564636!GO:0000781;chromosome, telomeric region;0.0318933693809345!GO:0004659;prenyltransferase activity;0.0322492453372268!GO:0030125;clathrin vesicle coat;0.0325749066212077!GO:0030665;clathrin coated vesicle membrane;0.0325749066212077!GO:0031577;spindle checkpoint;0.0327001962869255!GO:0007004;telomere maintenance via telomerase;0.0328496633451572!GO:0006564;L-serine biosynthetic process;0.0334644236356323!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0339356461992787!GO:0016049;cell growth;0.0341701396393845!GO:0030127;COPII vesicle coat;0.0343676464972657!GO:0012507;ER to Golgi transport vesicle membrane;0.0343676464972657!GO:0006740;NADPH regeneration;0.0344246886486962!GO:0006098;pentose-phosphate shunt;0.0344246886486962!GO:0006378;mRNA polyadenylation;0.0345371332898029!GO:0015036;disulfide oxidoreductase activity;0.0347137405231505!GO:0004003;ATP-dependent DNA helicase activity;0.0354111027882362!GO:0005784;translocon complex;0.0356266422218402!GO:0005765;lysosomal membrane;0.0362503756542696!GO:0001558;regulation of cell growth;0.0369927405265362!GO:0030132;clathrin coat of coated pit;0.0377787321764812!GO:0006779;porphyrin biosynthetic process;0.0380641193409033!GO:0033014;tetrapyrrole biosynthetic process;0.0380641193409033!GO:0031123;RNA 3'-end processing;0.038724608675998!GO:0048146;positive regulation of fibroblast proliferation;0.039183252455391!GO:0030262;apoptotic nuclear changes;0.0395242283176782!GO:0030145;manganese ion binding;0.0395242283176782!GO:0004221;ubiquitin thiolesterase activity;0.0396380261003773!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.0403454488882678!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.0403454488882678!GO:0045267;proton-transporting ATP synthase, catalytic core;0.0403454488882678!GO:0032774;RNA biosynthetic process;0.040925389872836!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0420577512092881!GO:0006470;protein amino acid dephosphorylation;0.0421563415562174!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0422979048149527!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0424052935816259!GO:0008538;proteasome activator activity;0.0424182862217165!GO:0032984;macromolecular complex disassembly;0.0429244444954147!GO:0048144;fibroblast proliferation;0.042956069865741!GO:0048145;regulation of fibroblast proliferation;0.042956069865741!GO:0030029;actin filament-based process;0.0432285627549354!GO:0006351;transcription, DNA-dependent;0.0436784154139588!GO:0009303;rRNA transcription;0.0442125615118839!GO:0007569;cell aging;0.044241570290753!GO:0030433;ER-associated protein catabolic process;0.0442945582458765!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0442945582458765!GO:0045792;negative regulation of cell size;0.0445496105125445!GO:0008333;endosome to lysosome transport;0.0449945161636929!GO:0005096;GTPase activator activity;0.0451990154316984!GO:0003677;DNA binding;0.0452454548851489!GO:0030522;intracellular receptor-mediated signaling pathway;0.0454307372755699!GO:0003923;GPI-anchor transamidase activity;0.0454307372755699!GO:0016255;attachment of GPI anchor to protein;0.0454307372755699!GO:0042765;GPI-anchor transamidase complex;0.0454307372755699!GO:0006730;one-carbon compound metabolic process;0.0455650088000862!GO:0048468;cell development;0.0457232405968053!GO:0046982;protein heterodimerization activity;0.0459305861099328!GO:0008536;Ran GTPase binding;0.0460466690426243!GO:0006467;protein thiol-disulfide exchange;0.0461646880235121!GO:0000726;non-recombinational repair;0.0463831988551795!GO:0009067;aspartate family amino acid biosynthetic process;0.047124698105351!GO:0001725;stress fiber;0.0474628847842053!GO:0032432;actin filament bundle;0.0474628847842053!GO:0000082;G1/S transition of mitotic cell cycle;0.0484405929955854!GO:0008097;5S rRNA binding;0.0499391148357386
|sample_id=10514
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.13666928814;bHLH_family:2.89801511419;ESRRA:1.68976229363;SREBF1,2:1.66677089602;CDC5L:1.58470903737;ELK1,4_GABP{A,B1}:1.56986205672;PRRX1,2:1.56425275168;PAX4:1.55910456632;EN1,2:1.52877130503;HOX{A6,A7,B6,B7}:1.52745885692;POU6F1:1.49518598598;NR5A1,2:1.46151894488;HOX{A4,D4}:1.41800464703;PAX8:1.38706220849;CRX:1.30150020294;HES1:1.21623101418;NR3C1:1.08529267703;PAX1,9:1.01138961129;NFIX:1.00877460393;NKX2-1,4:0.976383856842;RXR{A,B,G}:0.949451872959;SOX{8,9,10}:0.934585710046;FOX{F1,F2,J1}:0.886151430816;PAX6:0.790782742127;NRF1:0.751524577537;ZBTB16:0.741272848912;POU2F1..3:0.738722061906;FOXA2:0.722622915032;PBX1:0.710242029281;PAX2:0.704189224331;TOPORS:0.688550287889;OCT4_SOX2{dimer}:0.679885192186;ZNF143:0.655114149007;ARID5B:0.618142601406;TEF:0.615795976988;NANOG:0.611721020111;NFY{A,B,C}:0.580717394525;NFE2L1:0.573878114521;ELF1,2,4:0.573327440031;GFI1:0.556954347827;RORA:0.536454890042;YY1:0.525430687818;AHR_ARNT_ARNT2:0.50332153348;VSX1,2:0.452744519494;LHX3,4:0.443271054794;MYB:0.433966596487;STAT5{A,B}:0.433314173929;AIRE:0.428225652874;NFIL3:0.427443659249;SOX17:0.399524309441;CREB1:0.381568920594;E2F1..5:0.376289832545;TFDP1:0.34420309935;ATF4:0.312131107556;FOXQ1:0.309218815741;ATF5_CREB3:0.303429271041;PPARG:0.298456883162;ZNF423:0.298131540389;POU1F1:0.29528751736;GZF1:0.293446543859;CEBPA,B_DDIT3:0.287076943249;JUN:0.278173658757;TLX2:0.269079562198;SOX5:0.210273675658;RBPJ:0.209602057266;FOXP1:0.198071469236;SOX2:0.188468025794;REST:0.184542824295;MEF2{A,B,C,D}:0.175722138697;NKX2-3_NKX2-5:0.172068626;HOX{A5,B5}:0.170954837075;EVI1:0.159823505245;EGR1..3:0.146841892671;TLX1..3_NFIC{dimer}:0.140649558786;HNF4A_NR2F1,2:0.129267415416;FOXM1:0.11777769857;XBP1:0.108618417595;HIC1:0.0973258292768;NKX3-2:0.0869456841115;FOXD3:0.081570090622;TBX4,5:0.0396893963267;NKX2-2,8:0.0323457741179;ZNF384:0.012125794145;BREu{core}:0.0110507918269;MAFB:0.00681292152005;POU3F1..4:-0.00637774734138;GATA6:-0.0152390644996;NR1H4:-0.0162871024058;LEF1_TCF7_TCF7L1,2:-0.0362043779946;HLF:-0.0372303296626;MYFfamily:-0.0400951500198;IKZF2:-0.0510210704655;STAT1,3:-0.0546328493755;GATA4:-0.0602247224917;FOSL2:-0.0633648631657;IKZF1:-0.071817785433;XCPE1{core}:-0.0755919115041;CUX2:-0.0777701905671;TFAP2{A,C}:-0.0815669867938;TGIF1:-0.0863819900476;RFX2..5_RFXANK_RFXAP:-0.0902431360845;HIF1A:-0.0913133021794;SP1:-0.104611762599;RUNX1..3:-0.111955517831;UFEwm:-0.114873336558;NFE2:-0.122922256438;FOX{D1,D2}:-0.12624534991;DMAP1_NCOR{1,2}_SMARC:-0.129312385705;PRDM1:-0.134643313643;ALX4:-0.136501970909;NKX6-1,2:-0.162121100149;RFX1:-0.181509919077;TFAP2B:-0.190722413938;SPI1:-0.204473130483;PDX1:-0.212574670678;BACH2:-0.220467656494;T:-0.221932857612;ZIC1..3:-0.229318868231;FOXP3:-0.229955361901;NHLH1,2:-0.230401078758;ESR1:-0.232849189206;TEAD1:-0.262908803963;SPIB:-0.271912573657;ZFP161:-0.275247170302;FOS_FOS{B,L1}_JUN{B,D}:-0.278579156626;ZBTB6:-0.279961874359;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.281866185739;GTF2I:-0.287120958528;PAX3,7:-0.295523209524;ADNP_IRX_SIX_ZHX:-0.301933621592;HNF1A:-0.311719758374;DBP:-0.311838539781;MED-1{core}:-0.317161819506;AR:-0.321010884587;TP53:-0.325728538151;STAT2,4,6:-0.327886724129;FOX{I1,J2}:-0.331969306547;IRF1,2:-0.352036365193;MAZ:-0.353055692234;ONECUT1,2:-0.376447421464;GFI1B:-0.381915173159;ETS1,2:-0.382525910391;FOXL1:-0.38368763435;NFKB1_REL_RELA:-0.386990618168;MZF1:-0.396349727082;MYBL2:-0.398037654671;IRF7:-0.405526804385;FOXN1:-0.418344728746;NANOG{mouse}:-0.428445089638;PAX5:-0.446545700118;ATF2:-0.448470217325;SMAD1..7,9:-0.45345455308;BPTF:-0.462742763322;EBF1:-0.474768846219;GCM1,2:-0.478719461729;MTE{core}:-0.479565861904;TBP:-0.495296417985;SNAI1..3:-0.495477458687;POU5F1:-0.527937662661;SPZ1:-0.554487501872;PATZ1:-0.554661732926;ZEB1:-0.561571974236;NFATC1..3:-0.567931476729;KLF4:-0.570989050569;RREB1:-0.613529435097;GTF2A1,2:-0.621694737127;PITX1..3:-0.655955353675;ZNF148:-0.663247734936;TFCP2:-0.679075716384;GLI1..3:-0.704086789925;MYOD1:-0.710443625173;NFE2L2:-0.745248219404;HBP1_HMGB_SSRP1_UBTF:-0.749882213924;FOXO1,3,4:-0.770904257065;HSF1,2:-0.775285988346;HOXA9_MEIS1:-0.782631479076;CDX1,2,4:-0.799149086223;LMO2:-0.809535030938;SRF:-0.810233357519;HMGA1,2:-0.917799999498;ZNF238:-0.934825760402;TAL1_TCF{3,4,12}:-0.95231638609;MTF1:-0.966629352667;NKX3-1:-1.08141359011;ATF6:-1.11531480572;EP300:-1.14428365047;ALX1:-1.17595518614;HAND1,2:-1.33857840491;NR6A1:-1.34317387831;TFAP4:-1.35270443458;HMX1:-1.62752475776;RXRA_VDR{dimer}:-2.14932336603
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10514-107E1;search_select_hide=table117:FF:10514-107E1
}}
}}

Latest revision as of 14:28, 3 June 2020

Name:melanoma cell line:COLO 679
Species:Human (Homo sapiens)
Library ID:CNhs11281
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexfemale
age47
cell typemelanocyte
cell lineCOLO 679
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005005
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11281 CAGE DRX007930 DRR008802
Accession ID Hg19

Library idBAMCTSS
CNhs11281 DRZ000227 DRZ001612
Accession ID Hg38

Library idBAMCTSS
CNhs11281 DRZ011577 DRZ012962
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0294
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.303
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0.934
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.151
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0.314
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.108
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.189
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.184
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0613
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.115
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11281

Jaspar motifP-value
MA0002.20.229
MA0003.10.472
MA0004.12.36134e-4
MA0006.10.155
MA0007.10.732
MA0009.10.38
MA0014.10.812
MA0017.10.029
MA0018.20.0466
MA0019.10.847
MA0024.10.0532
MA0025.10.0962
MA0027.10.933
MA0028.11.6053e-7
MA0029.10.711
MA0030.10.406
MA0031.10.69
MA0035.20.0151
MA0038.10.0061
MA0039.20.996
MA0040.10.172
MA0041.10.0565
MA0042.10.232
MA0043.10.12
MA0046.10.0305
MA0047.20.673
MA0048.10.129
MA0050.10.194
MA0051.10.827
MA0052.10.00111
MA0055.10.141
MA0057.10.667
MA0058.12.06296e-9
MA0059.12.40665e-5
MA0060.15.22804e-4
MA0061.10.00358
MA0062.21.82767e-11
MA0065.20.27
MA0066.10.743
MA0067.10.00749
MA0068.10.0164
MA0069.10.556
MA0070.10.109
MA0071.10.622
MA0072.10.691
MA0073.10.568
MA0074.10.806
MA0076.13.25505e-9
MA0077.10.458
MA0078.10.243
MA0079.20.244
MA0080.20.00101
MA0081.10.496
MA0083.10.0984
MA0084.10.426
MA0087.10.878
MA0088.10.02
MA0090.10.442
MA0091.10.0185
MA0092.10.034
MA0093.11.85723e-5
MA0099.23.0302e-4
MA0100.10.0755
MA0101.10.105
MA0102.20.0423
MA0103.10.00571
MA0104.24.50426e-5
MA0105.10.0138
MA0106.10.592
MA0107.10.0214
MA0108.20.692
MA0111.10.697
MA0112.20.00832
MA0113.10.162
MA0114.10.431
MA0115.10.466
MA0116.10.00525
MA0117.10.527
MA0119.10.582
MA0122.10.569
MA0124.10.958
MA0125.10.16
MA0131.10.132
MA0135.10.129
MA0136.10.399
MA0137.20.641
MA0138.20.052
MA0139.10.271
MA0140.10.0997
MA0141.10.3
MA0142.10.949
MA0143.10.555
MA0144.10.516
MA0145.10.0524
MA0146.10.529
MA0147.15.77329e-5
MA0148.10.538
MA0149.10.328
MA0150.10.0378
MA0152.10.231
MA0153.10.0927
MA0154.10.0102
MA0155.10.0523
MA0156.10.0715
MA0157.10.84
MA0159.10.419
MA0160.10.772
MA0162.10.0115
MA0163.10.215
MA0164.10.919
MA0258.10.0878
MA0259.10.00806



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11281

Novel motifP-value
10.973
100.818
1000.679
1010.821
1020.136
1030.731
1040.981
1050.0717
1060.0213
1070.0921
1080.669
1090.93
110.39
1100.741
1110.0425
1120.58
1130.058
1140.0225
1150.573
1160.218
1170.289
1180.636
1190.075
120.149
1200.196
1210.62
1220.323
1230.231
1240.571
1250.259
1260.442
1270.224
1280.0199
1290.539
130.639
1300.591
1310.142
1320.412
1330.123
1340.763
1350.533
1360.0127
1370.325
1380.43
1390.0223
140.515
1400.0912
1410.854
1420.653
1430.0614
1440.614
1450.655
1460.5
1470.821
1480.879
1490.453
150.239
1500.311
1510.39
1520.611
1530.592
1540.596
1550.349
1560.524
1570.777
1580.704
1590.0896
160.94
1600.0458
1610.0378
1620.648
1630.661
1640.728
1650.25
1660.0613
1670.912
1680.445
1690.206
170.136
180.57
190.0843
20.155
200.112
210.297
220.519
230.0721
240.545
250.764
260.936
270.193
280.649
290.683
30.478
300.21
310.51
321.38527e-4
330.976
340.219
350.957
360.558
370.939
380.569
390.38
40.688
400.0664
410.926
420.537
430.127
440.305
450.219
460.297
470.738
480.604
490.256
50.824
500.714
510.125
520.116
530.369
540.38
550.719
560.701
570.932
580.226
590.279
60.0487
600.167
610.709
620.0972
630.152
640.531
650.213
660.0641
670.576
680.00331
690.329
70.668
700.438
710.524
720.32
730.784
740.446
750.25
760.499
770.0293
780.246
790.0436
80.234
800.689
810.163
820.0256
830.0679
840.776
850.508
860.513
870.0756
880.408
890.122
90.281
900.806
910.0452
920.108
930.745
940.066
950.295
960.263
970.743
980.221
990.581



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11281


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1909 (melanoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100849 (melanoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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