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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005162
|accession_numbers=CAGE;DRX007878;DRR008750;DRZ000175;DRZ001560;DRZ011525;DRZ012910
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.23!168.87!PAX8;;chr8:55370487..55370503,+!p1@SOX17!2.19!153.25!SOX17;;chr1:201979743..201979762,+!p1@ELF3!2.07!117.50!ELF3;;chr1:6479968..6479986,-!p1@HES2!1.95!88.34!HES2;;chr7:27205136..27205164,-!p1@HOXA9!1.91!81.05!HOXA9;;chr4:4861385..4861398,+!p1@MSX1!1.62!115.42!MSX1;;chr17:41739283..41739297,-!p1@MEOX1!1.62!40.44!MEOX1;;chr1:201979703..201979721,+!p2@ELF3!1.61!39.75!ELF3;;chr7:27205106..27205134,-!p2@HOXA9!1.53!32.98!HOXA9;;chr5:72744594..72744609,-!p1@FOXD1!1.40!107.78!FOXD1;;chr7:27192185..27192209,-!p1@HOXA3!1.38!23.08!HOXA3;;chr17:80797886..80797906,-!p1@ZNF750!1.38!23.08!ZNF750;;chr8:102504651..102504683,+!p1@GRHL2!1.38!22.91!GRHL2;;chr19:47523058..47523114,+!p1@NPAS1!1.36!22.04!NPAS1;;chr11:34642612..34642646,+!p1@EHF!1.32!19.79!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.27!22.39!TFAP2C;;chr11:34645791..34645836,+!p3@EHF!1.27!17.53!EHF;;chr7:20826504..20826526,-!p1@SP8!1.27!17.53!SP8;;chr6:1312325..1312340,+!p1@FOXQ1!1.24!26.73!FOXQ1;;chr3:193853927..193853944,+!p1@HES1!1.23!505.93!HES1;;chr3:169381420..169381535,-!p1@MECOM!1.23!18.57!MECOM;;chr14:38064429..38064486,-!p1@FOXA1!1.23!15.97!FOXA1;;chr14:33403881..33403924,+!p1@NPAS3!1.23!15.79!NPAS3;;chr1:42801540..42801562,-!p4@FOXJ3!1.21!15.10!FOXJ3;;chr6:34524093..34524135,-!p1@SPDEF!1.19!14.58!SPDEF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.18!14.23!ZBED1;;chr7:27196217..27196246,-!p2@HOXA7!1.15!13.02!HOXA7;;chr8:102504979..102505010,+!p2@GRHL2!1.14!12.67!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.12!13.71!IRF6;;chr7:96654133..96654150,-!p1@DLX5!1.11!11.98!DLX5;;chr17:35294075..35294102,+!p1@ENST00000559335!1.11!11.80!LHX1;;chr19:1753498..1753519,+!p1@ONECUT3!1.10!11.45!ONECUT3;;chr19:45971246..45971265,+!p1@FOSB!1.08!205.84!FOSB;;chr17:41322208..41322250,-!p3@BRCA1!1.06!31.07!BRCA1;;chr17:48072574..48072597,-!p1@DLX3!1.05!10.24!DLX3;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.72!PAX9;;chr1:209979411..209979433,-!p2@IRF6!1.02!9.37!IRF6;;chr11:34535297..34535317,-!p1@ELF5!1.01!9.20!ELF5;;chr13:100634031..100634045,+!p1@ZIC2!1.01!9.20!ZIC2;;chr3:32023232..32023273,+!p1@ZNF860!1.00!12.84!ZNF860;;chr7:73038839..73038862,-!p1@MLXIPL!0.99!8.68!MLXIPL;;chr13:100623375..100623425,-!p1@ZIC5!0.98!8.50!ZIC5;;chr13:73633131..73633149,+!p1@KLF5!0.97!92.33!KLF5;;chr3:111314186..111314204,-!p1@ZBED2!0.96!8.16!ZBED2;;chr20:18038521..18038571,-!p1@OVOL2!0.96!8.16!OVOL2;;chr2:71127699..71127744,+!p1@VAX2!0.95!16.66!VAX2;;chr10:48355030..48355090,+!p1@ZNF488!0.93!9.89!ZNF488;;chr10:135122868..135122893,+!p3@ZNF511!0.93!7.46!ZNF511;;chr5:124084493..124084524,-!p2@ZNF608!0.92!16.84!ZNF608;;chr17:41623259..41623278,-!p7@ETV4!0.92!8.68!ETV4;;chr8:102504690..102504704,+!p3@GRHL2!0.92!7.29!GRHL2;;chr14:61116183..61116208,-!p1@SIX1!0.91!28.29!SIX1;;chr2:16080659..16080685,+!p1@MYCN!0.91!7.12!MYCN;;chr2:239148671..239148686,-!p1@HES6!0.90!26.73!HES6;;chr7:20826426..20826432,-!p2@SP8!0.89!6.77!SP8;;chr5:72744445..72744466,-!p2@FOXD1!0.88!11.28!FOXD1;;chr17:41623692..41623715,-!p1@ETV4!0.87!28.64!ETV4;;chr13:100638100..100638115,+!p4@ZIC2!0.87!6.42!ZIC2;;chr11:34663913..34663945,+!p6@EHF!0.86!6.25!EHF;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.25!HOXA5;;chr8:22550982..22550999,-!p1@EGR3!0.85!18.05!EGR3;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.85!13.71!ZNF395;;chr2:10091815..10091864,+!p1@GRHL1!0.85!8.33!GRHL1;;chr2:46524897..46524911,+!p2@EPAS1!0.84!17.36!EPAS1;;chr2:113982635..113982648,-!p8@PAX8!0.83!5.73!PAX8;;chr12:52445218..52445237,+!p1@NR4A1!0.82!76.71!NR4A1;;chr20:32274179..32274213,-!p1@E2F1!0.82!39.92!E2F1;;chr6:10413188..10413249,-!p7@TFAP2A!0.82!5.55!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!0.80!35.06!ID4;;chr6:10415276..10415341,-!p2@TFAP2A!0.80!6.60!TFAP2A;;chr2:157189180..157189290,-!p1@NR4A2!0.79!29.16!NR4A2;;chr3:168865144..168865160,-!p6@MECOM!0.79!5.21!MECOM;;chr19:17356189..17356221,-!p2@NR2F6!0.78!8.68!NR2F6;;chr5:72744562..72744573,-!p3@FOXD1!0.78!6.42!FOXD1;;chr6:28321971..28321995,-!p1@ZNF323!0.78!5.03!ZNF323;;chr10:119303078..119303169,+!p2@EMX2!0.78!5.03!EMX2;;chr10:126138597..126138612,-!p1@NKX1-2!0.78!5.03!NKX1-2;;chr7:27135591..27135658,-!p1@HOXA1!0.77!9.89!HOXA1;;chr6:152126790..152126828,+!p3@ESR1!0.77!4.86!ESR1;;chr14:37051798..37051831,-!p1@NKX2-8!0.77!4.86!NKX2-8;;chr9:102584159..102584174,+!p2@NR4A3!0.74!8.50!NR4A3;;chr20:18038486..18038520,-!p2@OVOL2!0.73!4.34!OVOL2;;chr3:169381183..169381205,-!p4@MECOM!0.73!4.34!MECOM;;chr2:214015343..214015366,-!p3@IKZF2!0.71!4.17!IKZF2;;chr11:31832658..31832681,-!p1@PAX6!0.71!4.17!PAX6;;chr11:34535332..34535347,-!p2@ELF5!0.71!4.17!ELF5;;chr11:65554528..65554546,+!p1@OVOL1!0.71!4.17!OVOL1;;chr14:33403648..33403710,+!p3@NPAS3!0.71!4.17!NPAS3;;chr16:67881588..67881612,-!p2@CENPT!0.70!5.73!CENPT;;chr7:27205089..27205096,-!p4@HOXA9!0.70!3.99!HOXA9;;chr9:102584128..102584144,+!p3@NR4A3!0.69!7.98!NR4A3;;chr19:53496768..53496799,-!p1@ZNF702P!0.69!6.42!ZNF702P;;chr17:41622925..41622976,-!p3@ETV4!0.68!6.07!ETV4;;chr17:80797863..80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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
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|sample_cell_line=JHUEM-1
Line 83: Line 100:
|top_motifs=FOXQ1:2.13131983523;SNAI1..3:2.07657528751;ZEB1:1.95518164129;TEF:1.83745743312;ESRRA:1.63403163761;NKX2-3_NKX2-5:1.58742644239;T:1.27713329199;LMO2:1.13516868517;ONECUT1,2:1.13363280438;NR5A1,2:1.09641475847;RFX2..5_RFXANK_RFXAP:1.02026882141;XCPE1{core}:0.910098734991;PAX1,9:0.892164729661;SP1:0.890808759577;TEAD1:0.841689261752;CDC5L:0.804054219868;HOX{A6,A7,B6,B7}:0.794472280534;HOX{A5,B5}:0.794455314793;MYOD1:0.792190615624;ARID5B:0.789980712968;NKX2-1,4:0.787504148864;UFEwm:0.764245899515;HAND1,2:0.7139544852;FOX{I1,J2}:0.712632729556;ZBTB16:0.668587349214;NFY{A,B,C}:0.658300859907;NR6A1:0.649172770334;AIRE:0.611155831529;STAT5{A,B}:0.607021242685;LHX3,4:0.570248268373;NRF1:0.530028644009;PAX5:0.464642088202;TP53:0.424709550115;POU3F1..4:0.417428378262;ESR1:0.400927028496;SOX17:0.399687727423;ELK1,4_GABP{A,B1}:0.398617777651;VSX1,2:0.392544807908;FOXM1:0.367956024493;HSF1,2:0.365013089718;FOXD3:0.333965217844;IKZF1:0.329965607159;HMX1:0.302530889803;TBX4,5:0.280306780145;GFI1B:0.25721003773;TFAP4:0.253759985607;HNF4A_NR2F1,2:0.249394641747;NANOG:0.242653124564;PAX4:0.234740505571;HOX{A4,D4}:0.231222029488;POU1F1:0.219590002818;SOX{8,9,10}:0.179871850118;OCT4_SOX2{dimer}:0.1594756356;PDX1:0.15911265024;RXRA_VDR{dimer}:0.129956882848;AR:0.0904557598602;IKZF2:0.0893473733751;MTF1:0.0845842695334;YY1:0.0702359305458;E2F1..5:0.0667828304799;PBX1:0.0667471515963;ATF6:0.0614750130847;RBPJ:0.0529167343287;ZIC1..3:0.0483080022811;ZNF143:0.00670201690694;HNF1A:-0.00753719237641;NKX2-2,8:-0.0168640674652;CDX1,2,4:-0.0514412169989;TFCP2:-0.0520183187155;SPZ1:-0.0561382971251;ZNF148:-0.0590689854755;NKX3-2:-0.0600735978052;RFX1:-0.0619477130445;PPARG:-0.0764157208419;FOXA2:-0.0857045950728;ZNF384:-0.0938054630239;PITX1..3:-0.105635812191;NFIX:-0.117135583671;FOS_FOS{B,L1}_JUN{B,D}:-0.120601601731;NR3C1:-0.12292894152;MYB:-0.128851506261;POU6F1:-0.129534706145;SOX5:-0.146262216426;FOXL1:-0.155754431009;ALX4:-0.159008225329;LEF1_TCF7_TCF7L1,2:-0.179889122613;SOX2:-0.181984545286;TOPORS:-0.197385792401;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.20689932639;FOX{F1,F2,J1}:-0.225994762271;BACH2:-0.227354989829;KLF4:-0.230090433798;POU2F1..3:-0.232483654268;PRRX1,2:-0.243045533747;GZF1:-0.268090672933;GATA6:-0.275394803107;HIC1:-0.299139967612;ZNF423:-0.30020173611;ALX1:-0.303173139471;REST:-0.310253043776;ZFP161:-0.313974162978;FOSL2:-0.316943069247;ATF5_CREB3:-0.321052636761;NFE2:-0.321767521676;EVI1:-0.324812200005;NFKB1_REL_RELA:-0.327028344491;TBP:-0.349124919392;HBP1_HMGB_SSRP1_UBTF:-0.350200564882;ZBTB6:-0.365939395299;GFI1:-0.368853389673;bHLH_family:-0.372770589628;TFAP2B:-0.381340605459;CRX:-0.392367979086;TFDP1:-0.401365599889;HOXA9_MEIS1:-0.409138230121;FOXN1:-0.417466173577;NKX3-1:-0.419573550944;PAX8:-0.437814879388;PAX2:-0.441370892981;NKX6-1,2:-0.450286469987;BPTF:-0.473056861368;TAL1_TCF{3,4,12}:-0.478807942398;TLX1..3_NFIC{dimer}:-0.490654131839;SPI1:-0.504333514053;CUX2:-0.50495743443;HLF:-0.512789162094;NFIL3:-0.522602523317;IRF7:-0.52519714489;FOX{D1,D2}:-0.532552508732;SRF:-0.532921159317;MEF2{A,B,C,D}:-0.549133646413;SPIB:-0.551323421036;JUN:-0.553221862497;EN1,2:-0.559023378313;DBP:-0.566371084915;NFE2L1:-0.574881717491;NHLH1,2:-0.577624478422;ETS1,2:-0.577764293498;PAX3,7:-0.604093755349;GTF2A1,2:-0.609765689129;EP300:-0.613097320469;TFAP2{A,C}:-0.624996301232;RORA:-0.625208772034;ATF4:-0.633643633429;ATF2:-0.633656013939;ELF1,2,4:-0.661142463979;NFE2L2:-0.679034154911;GCM1,2:-0.688390577911;SREBF1,2:-0.69046237666;CEBPA,B_DDIT3:-0.706998741229;GTF2I:-0.723406422418;MYBL2:-0.739082906245;DMAP1_NCOR{1,2}_SMARC:-0.754089226765;MAZ:-0.755642228357;MED-1{core}:-0.768549853252;RUNX1..3:-0.771913332564;NR1H4:-0.783526333917;STAT2,4,6:-0.785677224079;AHR_ARNT_ARNT2:-0.796401915527;GATA4:-0.80274966587;EBF1:-0.808098634282;HES1:-0.809797355968;HMGA1,2:-0.815202001175;PRDM1:-0.832882548157;FOXP1:-0.842857768706;EGR1..3:-0.856437510182;FOXO1,3,4:-0.85938658444;FOXP3:-0.892541058419;CREB1:-0.909438539379;XBP1:-0.936699249054;TGIF1:-0.946703679197;RREB1:-0.950274579527;IRF1,2:-0.963705010704;MYFfamily:-0.978390190358;BREu{core}:-1.02359398242;TLX2:-1.05203923087;ADNP_IRX_SIX_ZHX:-1.0675321338;MZF1:-1.09319218703;PATZ1:-1.09601772018;MTE{core}:-1.10483033036;POU5F1:-1.11801676495;STAT1,3:-1.15443869038;HIF1A:-1.18939277722;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21635282236;PAX6:-1.21778282775;MAFB:-1.23452472598;ZNF238:-1.30974097725;NANOG{mouse}:-1.38849479864;RXR{A,B,G}:-1.43948850088;NFATC1..3:-1.45460559358;SMAD1..7,9:-1.49244330549;GLI1..3:-1.57507411941
|top_motifs=FOXQ1:2.13131983523;SNAI1..3:2.07657528751;ZEB1:1.95518164129;TEF:1.83745743312;ESRRA:1.63403163761;NKX2-3_NKX2-5:1.58742644239;T:1.27713329199;LMO2:1.13516868517;ONECUT1,2:1.13363280438;NR5A1,2:1.09641475847;RFX2..5_RFXANK_RFXAP:1.02026882141;XCPE1{core}:0.910098734991;PAX1,9:0.892164729661;SP1:0.890808759577;TEAD1:0.841689261752;CDC5L:0.804054219868;HOX{A6,A7,B6,B7}:0.794472280534;HOX{A5,B5}:0.794455314793;MYOD1:0.792190615624;ARID5B:0.789980712968;NKX2-1,4:0.787504148864;UFEwm:0.764245899515;HAND1,2:0.7139544852;FOX{I1,J2}:0.712632729556;ZBTB16:0.668587349214;NFY{A,B,C}:0.658300859907;NR6A1:0.649172770334;AIRE:0.611155831529;STAT5{A,B}:0.607021242685;LHX3,4:0.570248268373;NRF1:0.530028644009;PAX5:0.464642088202;TP53:0.424709550115;POU3F1..4:0.417428378262;ESR1:0.400927028496;SOX17:0.399687727423;ELK1,4_GABP{A,B1}:0.398617777651;VSX1,2:0.392544807908;FOXM1:0.367956024493;HSF1,2:0.365013089718;FOXD3:0.333965217844;IKZF1:0.329965607159;HMX1:0.302530889803;TBX4,5:0.280306780145;GFI1B:0.25721003773;TFAP4:0.253759985607;HNF4A_NR2F1,2:0.249394641747;NANOG:0.242653124564;PAX4:0.234740505571;HOX{A4,D4}:0.231222029488;POU1F1:0.219590002818;SOX{8,9,10}:0.179871850118;OCT4_SOX2{dimer}:0.1594756356;PDX1:0.15911265024;RXRA_VDR{dimer}:0.129956882848;AR:0.0904557598602;IKZF2:0.0893473733751;MTF1:0.0845842695334;YY1:0.0702359305458;E2F1..5:0.0667828304799;PBX1:0.0667471515963;ATF6:0.0614750130847;RBPJ:0.0529167343287;ZIC1..3:0.0483080022811;ZNF143:0.00670201690694;HNF1A:-0.00753719237641;NKX2-2,8:-0.0168640674652;CDX1,2,4:-0.0514412169989;TFCP2:-0.0520183187155;SPZ1:-0.0561382971251;ZNF148:-0.0590689854755;NKX3-2:-0.0600735978052;RFX1:-0.0619477130445;PPARG:-0.0764157208419;FOXA2:-0.0857045950728;ZNF384:-0.0938054630239;PITX1..3:-0.105635812191;NFIX:-0.117135583671;FOS_FOS{B,L1}_JUN{B,D}:-0.120601601731;NR3C1:-0.12292894152;MYB:-0.128851506261;POU6F1:-0.129534706145;SOX5:-0.146262216426;FOXL1:-0.155754431009;ALX4:-0.159008225329;LEF1_TCF7_TCF7L1,2:-0.179889122613;SOX2:-0.181984545286;TOPORS:-0.197385792401;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.20689932639;FOX{F1,F2,J1}:-0.225994762271;BACH2:-0.227354989829;KLF4:-0.230090433798;POU2F1..3:-0.232483654268;PRRX1,2:-0.243045533747;GZF1:-0.268090672933;GATA6:-0.275394803107;HIC1:-0.299139967612;ZNF423:-0.30020173611;ALX1:-0.303173139471;REST:-0.310253043776;ZFP161:-0.313974162978;FOSL2:-0.316943069247;ATF5_CREB3:-0.321052636761;NFE2:-0.321767521676;EVI1:-0.324812200005;NFKB1_REL_RELA:-0.327028344491;TBP:-0.349124919392;HBP1_HMGB_SSRP1_UBTF:-0.350200564882;ZBTB6:-0.365939395299;GFI1:-0.368853389673;bHLH_family:-0.372770589628;TFAP2B:-0.381340605459;CRX:-0.392367979086;TFDP1:-0.401365599889;HOXA9_MEIS1:-0.409138230121;FOXN1:-0.417466173577;NKX3-1:-0.419573550944;PAX8:-0.437814879388;PAX2:-0.441370892981;NKX6-1,2:-0.450286469987;BPTF:-0.473056861368;TAL1_TCF{3,4,12}:-0.478807942398;TLX1..3_NFIC{dimer}:-0.490654131839;SPI1:-0.504333514053;CUX2:-0.50495743443;HLF:-0.512789162094;NFIL3:-0.522602523317;IRF7:-0.52519714489;FOX{D1,D2}:-0.532552508732;SRF:-0.532921159317;MEF2{A,B,C,D}:-0.549133646413;SPIB:-0.551323421036;JUN:-0.553221862497;EN1,2:-0.559023378313;DBP:-0.566371084915;NFE2L1:-0.574881717491;NHLH1,2:-0.577624478422;ETS1,2:-0.577764293498;PAX3,7:-0.604093755349;GTF2A1,2:-0.609765689129;EP300:-0.613097320469;TFAP2{A,C}:-0.624996301232;RORA:-0.625208772034;ATF4:-0.633643633429;ATF2:-0.633656013939;ELF1,2,4:-0.661142463979;NFE2L2:-0.679034154911;GCM1,2:-0.688390577911;SREBF1,2:-0.69046237666;CEBPA,B_DDIT3:-0.706998741229;GTF2I:-0.723406422418;MYBL2:-0.739082906245;DMAP1_NCOR{1,2}_SMARC:-0.754089226765;MAZ:-0.755642228357;MED-1{core}:-0.768549853252;RUNX1..3:-0.771913332564;NR1H4:-0.783526333917;STAT2,4,6:-0.785677224079;AHR_ARNT_ARNT2:-0.796401915527;GATA4:-0.80274966587;EBF1:-0.808098634282;HES1:-0.809797355968;HMGA1,2:-0.815202001175;PRDM1:-0.832882548157;FOXP1:-0.842857768706;EGR1..3:-0.856437510182;FOXO1,3,4:-0.85938658444;FOXP3:-0.892541058419;CREB1:-0.909438539379;XBP1:-0.936699249054;TGIF1:-0.946703679197;RREB1:-0.950274579527;IRF1,2:-0.963705010704;MYFfamily:-0.978390190358;BREu{core}:-1.02359398242;TLX2:-1.05203923087;ADNP_IRX_SIX_ZHX:-1.0675321338;MZF1:-1.09319218703;PATZ1:-1.09601772018;MTE{core}:-1.10483033036;POU5F1:-1.11801676495;STAT1,3:-1.15443869038;HIF1A:-1.18939277722;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21635282236;PAX6:-1.21778282775;MAFB:-1.23452472598;ZNF238:-1.30974097725;NANOG{mouse}:-1.38849479864;RXR{A,B,G}:-1.43948850088;NFATC1..3:-1.45460559358;SMAD1..7,9:-1.49244330549;GLI1..3:-1.57507411941
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10643-109A4;search_select_hide=table117:FF:10643-109A4
}}
}}

Latest revision as of 14:32, 3 June 2020

Name:endometrioid adenocarcinoma cell line:JHUEM-1
Species:Human (Homo sapiens)
Library ID:CNhs11748
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueuterus
dev stageNA
sexfemale
age56
cell typeunclassifiable
cell lineJHUEM-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005162
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11748 CAGE DRX007878 DRR008750
Accession ID Hg19

Library idBAMCTSS
CNhs11748 DRZ000175 DRZ001560
Accession ID Hg38

Library idBAMCTSS
CNhs11748 DRZ011525 DRZ012910
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.201
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.185
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00566
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.113
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.369
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0577
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.143
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.129
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.409
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0127
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0374
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-7.712362e-4
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0277
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0695
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.129
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0109
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.178
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11748

Jaspar motifP-value
MA0002.20.285
MA0003.10.921
MA0004.10.158
MA0006.10.116
MA0007.10.206
MA0009.10.0984
MA0014.10.0565
MA0017.10.236
MA0018.20.00864
MA0019.10.8
MA0024.10.544
MA0025.10.718
MA0027.10.991
MA0028.10.158
MA0029.10.741
MA0030.10.286
MA0031.10.145
MA0035.20.621
MA0038.10.457
MA0039.26.86199e-4
MA0040.10.535
MA0041.10.858
MA0042.10.414
MA0043.10.00883
MA0046.10.817
MA0047.20.684
MA0048.10.913
MA0050.11.17834e-6
MA0051.13.50915e-4
MA0052.14.93576e-4
MA0055.10.00107
MA0057.10.3
MA0058.10.0304
MA0059.10.374
MA0060.11.14902e-5
MA0061.10.0197
MA0062.20.715
MA0065.20.014
MA0066.10.41
MA0067.10.00864
MA0068.12.62603e-6
MA0069.10.15
MA0070.10.837
MA0071.10.548
MA0072.10.807
MA0073.10.418
MA0074.10.957
MA0076.10.489
MA0077.10.158
MA0078.10.543
MA0079.20.349
MA0080.22.38813e-7
MA0081.10.0225
MA0083.10.179
MA0084.10.205
MA0087.10.44
MA0088.10.542
MA0090.10.00122
MA0091.10.105
MA0092.10.466
MA0093.10.114
MA0099.27.57555e-6
MA0100.10.503
MA0101.10.0095
MA0102.20.00872
MA0103.18.14226e-11
MA0104.20.259
MA0105.10.229
MA0106.10.0443
MA0107.10.00179
MA0108.20.133
MA0111.10.78
MA0112.20.0315
MA0113.10.756
MA0114.10.013
MA0115.10.135
MA0116.10.844
MA0117.10.218
MA0119.10.752
MA0122.10.122
MA0124.10.0507
MA0125.10.685
MA0131.10.783
MA0135.10.216
MA0136.11.38143e-5
MA0137.21.86253e-4
MA0138.20.811
MA0139.10.29
MA0140.10.756
MA0141.10.00281
MA0142.10.0693
MA0143.10.0546
MA0144.10.031
MA0145.10.0832
MA0146.10.0135
MA0147.10.499
MA0148.10.436
MA0149.10.0781
MA0150.10.00166
MA0152.10.169
MA0153.10.639
MA0154.10.934
MA0155.10.7
MA0156.11.65923e-4
MA0157.10.364
MA0159.10.0232
MA0160.10.162
MA0162.10.401
MA0163.10.688
MA0164.10.305
MA0258.10.176
MA0259.10.45



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11748

Novel motifP-value
10.17
100.569
1000.0496
1010.307
1020.243
1030.128
1040.218
1050.987
1060.477
1070.755
1080.279
1090.00735
110.62
1100.0984
1110.72
1120.39
1130.0383
1140.652
1150.225
1160.863
1170.209
1180.391
1190.743
120.0431
1200.302
1210.254
1220.521
1230.0944
1240.614
1250.96
1260.571
1270.491
1280.194
1290.111
130.00997
1300.99
1310.329
1320.265
1330.186
1340.153
1350.168
1360.00373
1370.588
1380.396
1390.747
140.775
1400.444
1410.381
1420.926
1430.312
1440.559
1450.771
1460.927
1470.392
1480.405
1490.422
150.607
1500.782
1510.412
1520.33
1530.102
1540.396
1550.106
1560.94
1570.855
1580.284
1590.603
160.0843
1600.551
1610.532
1620.14
1630.512
1640.399
1650.835
1660.85
1670.472
1680.324
1690.0854
170.242
180.354
190.899
20.479
200.572
210.747
220.534
230.822
240.137
250.921
260.529
270.479
280.811
290.727
30.839
300.527
310.727
320.659
330.372
340.309
350.29
360.829
370.374
380.419
390.85
40.248
400.124
410.0833
420.734
430.883
440.00916
450.79
460.694
470.344
480.622
490.636
50.617
500.578
510.627
520.798
530.318
540.756
550.418
560.744
570.777
580.785
590.964
60.569
600.997
610.249
620.824
630.365
640.667
650.797
660.0224
670.87
680.0308
690.519
70.405
700.452
710.725
720.359
730.0755
740.375
750.125
760.772
770.179
780.125
790.383
80.381
800.00489
810.844
820.841
830.788
840.341
850.382
860.619
870.0434
880.353
890.0821
90.211
900.125
910.0889
920.534
930.442
940.345
950.0112
960.352
970.895
980.301
990.272



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11748


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100658 (uterine adenocarcinoma cell sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

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