FF:10684-109E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005282 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007959;DRR008831;DRZ000256;DRZ001641;DRZ011606;DRZ012991 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:4231,DOID:201,DOID:0060100,DOID:1115,DOID:1907 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0100460 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100400,FF:0100453 | |fonse_cell_line=FF:0100400,FF:0100453 | ||
|fonse_cell_line_closure=FF:0100400,FF:0100453 | |fonse_cell_line_closure=FF:0100400,FF:0100453 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aNMFH-1.CNhs11821.10684-109E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10684-109E9 | |id=FF:10684-109E9 | ||
|is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF: | |is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF:0000210;;FF:0100460 | ||
|is_obsolete= | |||
|library_id=CNhs11821 | |||
|library_id_phase_based=2:CNhs11821 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10684 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10684 | |||
|name=myxofibrosarcoma cell line:NMFH-1 | |name=myxofibrosarcoma cell line:NMFH-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11821,LSID829,release010,COMPLETED | |profile_hcage=CNhs11821,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.0863814805447404,0.091793137593841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.037657641300346,0,0,0,0,0,0.261638876945607,0,0,0.00319677375492788,0,0,0,0,0,0,0,0,0,0,0,0,-0.101534810369002,0.0257534528333212,0.07339056349424,0,0,0,0,0,0,0.241101057447148,0,0,0,0,0,0.00250998638808461,0.07339056349424,0.35648796834263,0,0,0.0936370244356766,0,0,0,0,0,0,0,0,0.07339056349424,0,0,0,0,0.190980651648774,0,0,0,0,0,0,0,0,0,0,0,0.215318190846131,0,0,-0.115638235194737,-0.174502120948749,0,0.07339056349424,0.068076681766895,0,0.141620378805781,0.00323331884129876,0,0,0,0,0,0,0.07339056349424,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.13615336353379,0,0,-0.0860110649453747,-0.390493110972628,0,0,0.07339056349424,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.141620378805781,0,0,0,0,0,0.239655730043488,0.190980651648774,0,0.07339056349424,0,0,-0.173788311791324,0,-0.400695655257768,0.139905896760916,0,0,0.361203148118169,0,0,0,0,0,0,0,0,0,0.872799497111811,0,0.140568100059459,0.07339056349424,0,0,0,0,-0.305472230898407,0,0.0223406149762511,0.122636390571405,0,0,0,0,0.203146814561704,0,-0.120879483793741,0.0534331952103728,0.184266963721092,0.0917986795830172,0.0804408667526082,0,0,0,-0.6243131893012,0.625870479030207,0,0,-0.121779851751874,0.285765112298127,0,0,0.805642062997644,0,0.315187009021933,0.0519462575807855,0,-0.00758408308705074,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.126491732906266,0,0,0,0,-0.0882321971110426,0,0.0660155757848205,0.313906025617753,-0.196241412990621,0,-0.0524058371539379,0,-0.302389727009913,-0.0488764809810781,-0.515028535502694,-0.115638235194737,-0.147401849371139,-0.189981719549847,0,-0.0428855860262003,0.35634883213881,0.0353305589565005,0.207353989822119,0.00693185114615755,0.202250057388202,-0.0219646029351914,0.07339056349424,0,0.11347172516947,-0.340759824912452,0,0.00555083719663418,-0.206693675192386,0.0819573003986905,-0.59759687298147,-0.221245253787229,-0.0209918810078221,0.30082351529691,0.620396400636851,0.138687081055393,0.0152032106594494,0.400137545933955,0,0,0,0.108454934195145,-0.151041318316465,-0.0197026392266912,0,-0.090780109559459,0.21507677820702,0.03669528174712,-0.119293189269368,0.0884867889211787,0,0,0.183657842670551,0,0,0.0355287952921373,0,0,0.131263371906247,0.236544793050439,-0.0967021980217546,0,-0.10421632888248,0.0183122449070118,0.0292242754343085,0,-0.173502225469817,0,-0.0146531130769044,-0.401821083454461,0,-0.047991386016284,-0.303464516696592,-0.0240666122368463,-0.349004241897497,-0.0584468268118252,0.445389152471068,0.259390393510931,0.0618188181665831,0.278434002775274,-0.124307696593413,-0.0881268324752877,0,0.313141894030899,-0.679498131621524,0,0.201328998866285,0,0.0126241913055083,0,-0.133839420999311,0,-0.0655068674616507,-0.0596846193409041,0.0913427825392797,-0.0254083421453093,0,-0.29101206255152,-0.788130937773974,0,0,0.0046299192800352,0,0.274016878990338,0.0211739986660947,-0.138259864370349,0.182290448211759,0,0.277293709175844,0,0.07339056349424,-0.238978989997952,-0.235476037764389,0,0.0470650573591059,-0.102796467965279,-0.00809250724330668,-0.042580509940694,0.13615336353379,0,-0.645700337992725,0,0,-0.322507024533642,0.0144900866612578,-0.619783323958633,-0.117172977952966,0,0.20780373169325,0,0,-0.0413744024313855,0,0.260445672080095,0,0,0.273046759814351,0.424226369458497,0,0,0.190980651648774,0,0,0,0,0,0,0,0,-0.166758990711399,0.069550632108529,0,0,0,0,0,0,0,0,0,0.190980651648774,0.13578093578301,0,0.160403623607968,0,0,0,0,-0.215723402553475,0.156360211118941,0,0.00429065703615844,0,0,0,0,-0.0861409897892114,0,0,0,0.104771963514015,0.265446476127274,-0.00983540851585335,0,0,0,0.00646663768259753,0,0,0,0,-0.114932638784465,0,0,0.0210905381874102,0,-0.130635101512489,-0.0815818795468414,0,0.149631802898637,-0.0106532203208496,-0.656599629074672,0,0,-0.125193768256097,0,0,-0.221485058428028,0.0688918673002818,0,-0.0105100449512875,0,0,0,0,0,0.13615336353379,-0.023333860750982,0,0,0,0,0,0,0,0,0,0,0.07339056349424,-0.281476488502296,-0.0188334931642704,0.07339056349424,0,0,0,0,0,0,-0.0241060230789031,0.018540168859255,0,0,0.095490325824387,0,0,0.07339056349424,0,0,0.103945431413732,0,0,0,0,0,0.35648796834263,0,0,0,0,0.183586275187682,0,0,-0.0863814805447404,0,0,0,0,0,0,0.03669528174712,0,0,0,0,0,0,0.0128342774983424,-0.308746403449607,0,0.07339056349424,0,0,0,0,0,-0.0351775681626029,0,0,0,0,-0.0404938102147372,0,0,0,0.0861842668596172,0,-0.160318030086386,0,0.07339056349424,0,0,0,0.143696322669901,0.095490325824387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443087369045322,0,0.11573126171995,-0.0106814876367005,0,0,0.0205748704910167,0,0,0,0,0,0,0.00535485771859295,0.0310646656858382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13615336353379,0,0,0,0,0,0.03669528174712,0.0123771904194905,0,0,0,0,0.393197352251522,0,0,0.261638876945607,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0702103020595204,-0.0353453314494201,0.0393261395207457,0,0,0,-0.017690290735335,0,0,0.0142814564628785,0.07339056349424,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07339056349424,0,0,0,0,0,0,0,0,0,0.037657641300346,0,0,0.07339056349424,0,0,0,0,0,0,0,0,0,0.068076681766895,0,0,0,0,0,0,0,0,0,0,0,0,0.13615336353379,0,0.07339056349424,0,0,0,0,0,0,0.07339056349424,0.0026839184717035,0.07339056349424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0561348952651518,0,0,0,0.7187957589246,0,0,0,0,0,0,0,0,0.190980651648774,0,0,0,0,0,0,0,0,0,0,0,0.07339056349424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.269275503416604,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191433654804433,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225532893564893,0,0,0,0,0.0257534528333212,0,0,0,0,0,0,0.07339056349424,0.00806182802253365,0,0,0,0,0,0,0,0,0,0,0.03669528174712,0,0,0.362318533034393,0,0,-0.101534810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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.09E+11 | ||
|rna_weight_ug=45.12893 | |rna_weight_ug=45.12893 | ||
|sample_age=89 | |sample_age=89 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2346 | |sample_cell_catalog=RCB2346 | ||
|sample_cell_line=NMFH-1 | |sample_cell_line=NMFH-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.50459721090774e-238!GO:0043231;intracellular membrane-bound organelle;2.68843166220313e-199!GO:0043227;membrane-bound organelle;5.14480619560043e-199!GO:0043226;organelle;2.24608901619062e-197!GO:0043229;intracellular organelle;4.91816054265318e-197!GO:0005737;cytoplasm;5.0495134312022e-166!GO:0044422;organelle part;9.09936218973839e-148!GO:0044446;intracellular organelle part;2.18934296654889e-146!GO:0044444;cytoplasmic part;2.3554544317799e-118!GO:0032991;macromolecular complex;9.44195212022957e-101!GO:0005634;nucleus;1.54343845560759e-90!GO:0044237;cellular metabolic process;2.24019331637818e-90!GO:0044238;primary metabolic process;1.42820077293186e-89!GO:0043170;macromolecule metabolic process;1.36309477912602e-86!GO:0030529;ribonucleoprotein complex;9.84060192569328e-84!GO:0044428;nuclear part;3.1272871333941e-76!GO:0005515;protein binding;1.20523917352383e-75!GO:0043233;organelle lumen;1.24203745021877e-71!GO:0031974;membrane-enclosed lumen;1.24203745021877e-71!GO:0003723;RNA binding;8.67299047675499e-67!GO:0005739;mitochondrion;4.77341000858714e-57!GO:0043283;biopolymer metabolic process;1.26688928685477e-52!GO:0043234;protein complex;1.24922922400729e-51!GO:0006396;RNA processing;1.60467621971159e-51!GO:0016043;cellular component organization and biogenesis;5.09039001036728e-51!GO:0031090;organelle membrane;9.0970983476323e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.96816296551838e-49!GO:0010467;gene expression;3.12604237929051e-47!GO:0006412;translation;3.48289641863817e-47!GO:0005840;ribosome;4.38078692868579e-47!GO:0031981;nuclear lumen;9.70417188054719e-46!GO:0019538;protein metabolic process;4.21258229456589e-45!GO:0015031;protein transport;4.08130079517151e-41!GO:0003735;structural constituent of ribosome;9.83984042522163e-41!GO:0044260;cellular macromolecule metabolic process;1.34369984954179e-40!GO:0016071;mRNA metabolic process;1.49929429220133e-40!GO:0044267;cellular protein metabolic process;3.40090642785671e-40!GO:0033036;macromolecule localization;3.50891442226341e-39!GO:0044429;mitochondrial part;4.25164488398402e-39!GO:0006996;organelle organization and biogenesis;1.12704941590804e-37!GO:0008380;RNA splicing;1.88797834533729e-37!GO:0005829;cytosol;1.9744515485018e-37!GO:0031967;organelle envelope;2.21150334953729e-37!GO:0031975;envelope;5.16458763287064e-37!GO:0045184;establishment of protein localization;5.37343273462495e-37!GO:0044249;cellular biosynthetic process;7.40828632235739e-36!GO:0008104;protein localization;1.68696599244436e-35!GO:0033279;ribosomal subunit;1.69304904772883e-35!GO:0006397;mRNA processing;2.62644100030858e-35!GO:0043228;non-membrane-bound organelle;2.78979028534118e-35!GO:0043232;intracellular non-membrane-bound organelle;2.78979028534118e-35!GO:0006259;DNA metabolic process;6.92826638081678e-35!GO:0009058;biosynthetic process;7.65177468396009e-35!GO:0009059;macromolecule biosynthetic process;4.47311700634287e-34!GO:0046907;intracellular transport;9.34945724801102e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.65870919135369e-31!GO:0065003;macromolecular complex assembly;4.57332986608628e-31!GO:0003676;nucleic acid binding;6.19455569890097e-30!GO:0007049;cell cycle;3.54779870557621e-29!GO:0022607;cellular component assembly;2.3503947161138e-28!GO:0005654;nucleoplasm;3.27399338596865e-28!GO:0006886;intracellular protein transport;4.2514933882689e-27!GO:0005681;spliceosome;3.25081094374648e-26!GO:0005740;mitochondrial envelope;1.51114316427777e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.01700436934051e-25!GO:0031966;mitochondrial membrane;2.60821708684247e-24!GO:0019866;organelle inner membrane;1.09861925204645e-23!GO:0016070;RNA metabolic process;1.21230148811508e-23!GO:0044451;nucleoplasm part;1.33059953852769e-23!GO:0000278;mitotic cell cycle;5.93887370391639e-23!GO:0000166;nucleotide binding;6.4788321875232e-23!GO:0016462;pyrophosphatase activity;1.40914018475278e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.35166076886805e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.94747825652823e-22!GO:0022402;cell cycle process;3.54670689947599e-22!GO:0017111;nucleoside-triphosphatase activity;7.25660703499037e-22!GO:0005743;mitochondrial inner membrane;1.55249418270562e-21!GO:0012505;endomembrane system;1.98175990560685e-21!GO:0006119;oxidative phosphorylation;4.44984694621788e-21!GO:0008134;transcription factor binding;8.67012429797087e-21!GO:0051649;establishment of cellular localization;1.68446427239365e-20!GO:0051641;cellular localization;2.01183809281647e-20!GO:0044445;cytosolic part;3.22753263991153e-20!GO:0005694;chromosome;8.82138364461436e-20!GO:0006457;protein folding;3.12698993649757e-19!GO:0015935;small ribosomal subunit;5.15490718051139e-19!GO:0044455;mitochondrial membrane part;6.19179755711962e-19!GO:0022618;protein-RNA complex assembly;1.28498908844021e-18!GO:0044427;chromosomal part;4.23480921007371e-18!GO:0000087;M phase of mitotic cell cycle;8.43261865091834e-18!GO:0007067;mitosis;1.43176474901077e-17!GO:0015934;large ribosomal subunit;1.44338670181186e-17!GO:0022403;cell cycle phase;1.88039426960948e-17!GO:0005730;nucleolus;3.41338048546427e-17!GO:0006974;response to DNA damage stimulus;4.10860752794349e-17!GO:0044432;endoplasmic reticulum part;1.27039489274954e-16!GO:0005783;endoplasmic reticulum;1.47029382736575e-16!GO:0051276;chromosome organization and biogenesis;2.51828313727477e-16!GO:0006512;ubiquitin cycle;2.57668701319724e-16!GO:0048770;pigment granule;2.62493034246375e-16!GO:0042470;melanosome;2.62493034246375e-16!GO:0031980;mitochondrial lumen;2.62493034246375e-16!GO:0005759;mitochondrial matrix;2.62493034246375e-16!GO:0005746;mitochondrial respiratory chain;3.74989861744935e-16!GO:0016874;ligase activity;3.79053098940947e-16!GO:0006260;DNA replication;7.43577958019997e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.93767540138078e-15!GO:0017076;purine nucleotide binding;2.45516965031366e-15!GO:0032553;ribonucleotide binding;2.980096114927e-15!GO:0032555;purine ribonucleotide binding;2.980096114927e-15!GO:0051082;unfolded protein binding;5.96903182493616e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.42945561683061e-15!GO:0000279;M phase;9.73261662911538e-15!GO:0006605;protein targeting;9.82660825872759e-15!GO:0008135;translation factor activity, nucleic acid binding;1.40382921845997e-14!GO:0006281;DNA repair;1.60456049079508e-14!GO:0044265;cellular macromolecule catabolic process;1.71931238134981e-14!GO:0043285;biopolymer catabolic process;1.73121762837849e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.31262474948265e-14!GO:0003954;NADH dehydrogenase activity;2.31262474948265e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.31262474948265e-14!GO:0005524;ATP binding;2.62441931699023e-14!GO:0051301;cell division;2.71068198844179e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;4.38997061729236e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;6.74813225406775e-14!GO:0000375;RNA splicing, via transesterification reactions;6.74813225406775e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.74813225406775e-14!GO:0019941;modification-dependent protein catabolic process;7.4171077296769e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.4171077296769e-14!GO:0005794;Golgi apparatus;8.38222002321378e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.41824200055526e-14!GO:0032559;adenyl ribonucleotide binding;8.68172143214362e-14!GO:0005761;mitochondrial ribosome;9.04108532112963e-14!GO:0000313;organellar ribosome;9.04108532112963e-14!GO:0030554;adenyl nucleotide binding;1.056161536737e-13!GO:0051186;cofactor metabolic process;1.08715016329958e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.16597691337124e-13!GO:0042254;ribosome biogenesis and assembly;1.21122938137197e-13!GO:0044257;cellular protein catabolic process;1.22012737715023e-13!GO:0003712;transcription cofactor activity;1.67570840031773e-13!GO:0009057;macromolecule catabolic process;5.34376886768725e-13!GO:0030163;protein catabolic process;5.62719098599939e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.05772211631689e-12!GO:0042773;ATP synthesis coupled electron transport;1.05772211631689e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.14532866335554e-12!GO:0045271;respiratory chain complex I;1.14532866335554e-12!GO:0005747;mitochondrial respiratory chain complex I;1.14532866335554e-12!GO:0005635;nuclear envelope;1.24677901393602e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;1.24712600534139e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.54150564455446e-12!GO:0009719;response to endogenous stimulus;1.72658770872982e-12!GO:0016887;ATPase activity;3.3500420821095e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.76945835302245e-12!GO:0048193;Golgi vesicle transport;4.04019132482925e-12!GO:0016192;vesicle-mediated transport;4.82706843372272e-12!GO:0006323;DNA packaging;5.05394005064116e-12!GO:0005789;endoplasmic reticulum membrane;5.58427930289743e-12!GO:0031965;nuclear membrane;5.90828767779515e-12!GO:0044453;nuclear membrane part;6.25105684655132e-12!GO:0003743;translation initiation factor activity;7.91115921120009e-12!GO:0042623;ATPase activity, coupled;1.11256593622718e-11!GO:0005793;ER-Golgi intermediate compartment;1.16877369724564e-11!GO:0006366;transcription from RNA polymerase II promoter;1.48855842652717e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.48855842652717e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.84679563293765e-11!GO:0006413;translational initiation;1.8504384748428e-11!GO:0043412;biopolymer modification;2.21854441690019e-11!GO:0044248;cellular catabolic process;2.25299466815389e-11!GO:0016604;nuclear body;2.60915709881978e-11!GO:0006913;nucleocytoplasmic transport;3.15871183923944e-11!GO:0051726;regulation of cell cycle;4.60304268356162e-11!GO:0000074;regulation of progression through cell cycle;4.64753192516678e-11!GO:0051169;nuclear transport;6.63642441084093e-11!GO:0006732;coenzyme metabolic process;1.23779566686885e-10!GO:0006446;regulation of translational initiation;2.0943233459868e-10!GO:0006399;tRNA metabolic process;2.18440491000288e-10!GO:0004386;helicase activity;3.60578473120858e-10!GO:0015630;microtubule cytoskeleton;5.61211797287064e-10!GO:0065004;protein-DNA complex assembly;6.04670619530489e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.86322603613044e-10!GO:0050794;regulation of cellular process;1.20192560839669e-09!GO:0006464;protein modification process;1.48506601723752e-09!GO:0009259;ribonucleotide metabolic process;1.49267471298416e-09!GO:0005643;nuclear pore;1.63801416584021e-09!GO:0000785;chromatin;2.79283487485132e-09!GO:0006163;purine nucleotide metabolic process;2.96081409756488e-09!GO:0008026;ATP-dependent helicase activity;4.04271694621754e-09!GO:0016607;nuclear speck;4.19524871591613e-09!GO:0006403;RNA localization;4.66952336934033e-09!GO:0050657;nucleic acid transport;4.93289873255432e-09!GO:0051236;establishment of RNA localization;4.93289873255432e-09!GO:0050658;RNA transport;4.93289873255432e-09!GO:0008639;small protein conjugating enzyme activity;5.14342403852119e-09!GO:0006333;chromatin assembly or disassembly;5.61365201984922e-09!GO:0048523;negative regulation of cellular process;6.77284699674082e-09!GO:0009150;purine ribonucleotide metabolic process;8.02252341962174e-09!GO:0006364;rRNA processing;9.12464208045663e-09!GO:0031324;negative regulation of cellular metabolic process;9.6612604616396e-09!GO:0017038;protein import;1.04614843446591e-08!GO:0004842;ubiquitin-protein ligase activity;1.33790411577322e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.46899404785238e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.46899404785238e-08!GO:0043687;post-translational protein modification;1.52010329921127e-08!GO:0009260;ribonucleotide biosynthetic process;1.56211433149695e-08!GO:0006164;purine nucleotide biosynthetic process;1.66847846945021e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.7153946052271e-08!GO:0016072;rRNA metabolic process;1.94764531428528e-08!GO:0065002;intracellular protein transport across a membrane;2.12006813755504e-08!GO:0008565;protein transporter activity;2.62632902757564e-08!GO:0009141;nucleoside triphosphate metabolic process;2.76147792425805e-08!GO:0019829;cation-transporting ATPase activity;3.00954499790498e-08!GO:0005768;endosome;3.01873931519662e-08!GO:0019787;small conjugating protein ligase activity;3.18191665061376e-08!GO:0046930;pore complex;3.21051894667022e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.21051894667022e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.21051894667022e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.21051894667022e-08!GO:0043566;structure-specific DNA binding;3.38577177794508e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.56935397888404e-08!GO:0012501;programmed cell death;3.9080002816727e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.38332143564797e-08!GO:0009055;electron carrier activity;4.70310103949546e-08!GO:0000775;chromosome, pericentric region;5.28841306590807e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.31314352277342e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.31314352277342e-08!GO:0045333;cellular respiration;6.34836713905709e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.57807489247147e-08!GO:0009060;aerobic respiration;6.60351926508992e-08!GO:0006915;apoptosis;6.60351926508992e-08!GO:0015986;ATP synthesis coupled proton transport;6.85336807093498e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.85336807093498e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.41659494769243e-08!GO:0044440;endosomal part;7.891130334087e-08!GO:0010008;endosome membrane;7.891130334087e-08!GO:0043038;amino acid activation;8.13333615962763e-08!GO:0006418;tRNA aminoacylation for protein translation;8.13333615962763e-08!GO:0043039;tRNA aminoacylation;8.13333615962763e-08!GO:0016564;transcription repressor activity;9.23099166263403e-08!GO:0006461;protein complex assembly;9.23099166263403e-08!GO:0005667;transcription factor complex;9.53909253905409e-08!GO:0009892;negative regulation of metabolic process;1.20144170133113e-07!GO:0046034;ATP metabolic process;1.23665968598966e-07!GO:0016881;acid-amino acid ligase activity;1.44098390813026e-07!GO:0016563;transcription activator activity;1.78546139315024e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.83437463567117e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.1459249091287e-07!GO:0016568;chromatin modification;2.36624010073772e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.42172057748932e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.42172057748932e-07!GO:0003924;GTPase activity;2.43607170016455e-07!GO:0005819;spindle;2.60102410672624e-07!GO:0051028;mRNA transport;2.60140324904863e-07!GO:0051188;cofactor biosynthetic process;2.61088677743062e-07!GO:0005813;centrosome;3.18908115002517e-07!GO:0008219;cell death;3.20547867759863e-07!GO:0016265;death;3.20547867759863e-07!GO:0000245;spliceosome assembly;3.23335246717863e-07!GO:0051246;regulation of protein metabolic process;3.36119709153964e-07!GO:0007051;spindle organization and biogenesis;3.64458237922259e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.3391960899806e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.3391960899806e-07!GO:0048519;negative regulation of biological process;4.74518214331609e-07!GO:0006334;nucleosome assembly;5.61117607608844e-07!GO:0003697;single-stranded DNA binding;5.72905023746199e-07!GO:0019222;regulation of metabolic process;5.85762760778398e-07!GO:0016779;nucleotidyltransferase activity;6.35949032478061e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.36601409454164e-07!GO:0031497;chromatin assembly;6.4893201672314e-07!GO:0003713;transcription coactivator activity;7.17267805158639e-07!GO:0003714;transcription corepressor activity;7.41453431034385e-07!GO:0006754;ATP biosynthetic process;7.41453431034385e-07!GO:0006753;nucleoside phosphate metabolic process;7.41453431034385e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.94268517539733e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.3756416192469e-07!GO:0044431;Golgi apparatus part;9.39432581080947e-07!GO:0009056;catabolic process;1.03942959658293e-06!GO:0006261;DNA-dependent DNA replication;1.06475705085399e-06!GO:0048475;coated membrane;1.13796427994768e-06!GO:0030117;membrane coat;1.13796427994768e-06!GO:0005770;late endosome;1.13796427994768e-06!GO:0005815;microtubule organizing center;1.23160517084792e-06!GO:0016481;negative regulation of transcription;1.50833597800309e-06!GO:0009117;nucleotide metabolic process;1.63256222936569e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.76327820113714e-06!GO:0030120;vesicle coat;1.97369631119031e-06!GO:0030662;coated vesicle membrane;1.97369631119031e-06!GO:0005788;endoplasmic reticulum lumen;1.97763280261387e-06!GO:0016787;hydrolase activity;2.86378563386241e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.88187858794921e-06!GO:0051329;interphase of mitotic cell cycle;2.93165770555779e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.06238336742775e-06!GO:0045259;proton-transporting ATP synthase complex;3.63525651776677e-06!GO:0006099;tricarboxylic acid cycle;4.06574267765237e-06!GO:0046356;acetyl-CoA catabolic process;4.06574267765237e-06!GO:0009108;coenzyme biosynthetic process;5.05395188455235e-06!GO:0016740;transferase activity;6.12223173817586e-06!GO:0051170;nuclear import;6.28260158379142e-06!GO:0005773;vacuole;7.14231322778089e-06!GO:0000151;ubiquitin ligase complex;7.52581943315962e-06!GO:0006606;protein import into nucleus;7.81984152582274e-06!GO:0003724;RNA helicase activity;8.70076407571504e-06!GO:0007005;mitochondrion organization and biogenesis;9.00199113913761e-06!GO:0005762;mitochondrial large ribosomal subunit;9.10590411676348e-06!GO:0000315;organellar large ribosomal subunit;9.10590411676348e-06!GO:0005657;replication fork;9.20046065170288e-06!GO:0051325;interphase;1.03732642815473e-05!GO:0050789;regulation of biological process;1.13554046457514e-05!GO:0000075;cell cycle checkpoint;1.20239398701061e-05!GO:0006084;acetyl-CoA metabolic process;1.27996192131505e-05!GO:0007010;cytoskeleton organization and biogenesis;1.56347222890631e-05!GO:0051427;hormone receptor binding;1.68104438875124e-05!GO:0051187;cofactor catabolic process;1.71553120443152e-05!GO:0042981;regulation of apoptosis;1.71553120443152e-05!GO:0043067;regulation of programmed cell death;1.750653921579e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.76353499280266e-05!GO:0006916;anti-apoptosis;1.84330926707938e-05!GO:0004298;threonine endopeptidase activity;2.07574639770791e-05!GO:0005769;early endosome;2.21497835200055e-05!GO:0043069;negative regulation of programmed cell death;2.22790274839963e-05!GO:0006793;phosphorus metabolic process;2.22790274839963e-05!GO:0006796;phosphate metabolic process;2.22790274839963e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.27769811274337e-05!GO:0043623;cellular protein complex assembly;2.35776664835012e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.44094549529177e-05!GO:0009109;coenzyme catabolic process;2.47842885661006e-05!GO:0032446;protein modification by small protein conjugation;2.60297325419122e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.76174703625797e-05!GO:0043066;negative regulation of apoptosis;2.86043467295707e-05!GO:0000323;lytic vacuole;3.5644577565006e-05!GO:0005764;lysosome;3.5644577565006e-05!GO:0035257;nuclear hormone receptor binding;3.72392636109578e-05!GO:0045786;negative regulation of progression through cell cycle;3.80494681739694e-05!GO:0006613;cotranslational protein targeting to membrane;3.81908083706237e-05!GO:0016567;protein ubiquitination;3.95958231046083e-05!GO:0019867;outer membrane;4.10423204440239e-05!GO:0003899;DNA-directed RNA polymerase activity;4.7599715363555e-05!GO:0005798;Golgi-associated vesicle;4.89266987780465e-05!GO:0016491;oxidoreductase activity;5.29394765343717e-05!GO:0016310;phosphorylation;5.52938894344379e-05!GO:0000139;Golgi membrane;5.71598326775606e-05!GO:0008654;phospholipid biosynthetic process;6.33102682618328e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.52696090508895e-05!GO:0051168;nuclear export;6.89710051022652e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.98937160554351e-05!GO:0031988;membrane-bound vesicle;7.29519946263944e-05!GO:0016853;isomerase activity;7.43372659061261e-05!GO:0031968;organelle outer membrane;7.49733240429288e-05!GO:0005048;signal sequence binding;7.60551451138435e-05!GO:0031252;leading edge;8.01912467030391e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;8.14016608607027e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.75388804612018e-05!GO:0031323;regulation of cellular metabolic process;8.77634687299771e-05!GO:0006091;generation of precursor metabolites and energy;8.92832931637775e-05!GO:0000314;organellar small ribosomal subunit;9.24972009006432e-05!GO:0005763;mitochondrial small ribosomal subunit;9.24972009006432e-05!GO:0006752;group transfer coenzyme metabolic process;9.32086237173075e-05!GO:0008094;DNA-dependent ATPase activity;9.5886444334655e-05!GO:0008361;regulation of cell size;9.68952210272526e-05!GO:0051789;response to protein stimulus;0.000111595504168209!GO:0006986;response to unfolded protein;0.000111595504168209!GO:0019843;rRNA binding;0.000124855358125094!GO:0016859;cis-trans isomerase activity;0.000135906650078332!GO:0008186;RNA-dependent ATPase activity;0.00013767731161912!GO:0016049;cell growth;0.000143341463007577!GO:0006350;transcription;0.000152762339356882!GO:0015980;energy derivation by oxidation of organic compounds;0.000160042393477987!GO:0019899;enzyme binding;0.00018574717746184!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000199151645297886!GO:0005741;mitochondrial outer membrane;0.000245367193817086!GO:0000082;G1/S transition of mitotic cell cycle;0.000259238003085269!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000268179608288843!GO:0007059;chromosome segregation;0.000268179608288843!GO:0000776;kinetochore;0.000268316509880147!GO:0006302;double-strand break repair;0.000271694982842099!GO:0003729;mRNA binding;0.000275362929528913!GO:0030867;rough endoplasmic reticulum membrane;0.000286582366095778!GO:0033116;ER-Golgi intermediate compartment membrane;0.000309776339248789!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00033203996655456!GO:0001558;regulation of cell growth;0.000334657415632649!GO:0031982;vesicle;0.000334670454086451!GO:0031410;cytoplasmic vesicle;0.000356127727125859!GO:0006612;protein targeting to membrane;0.000362726220280217!GO:0004004;ATP-dependent RNA helicase activity;0.000395834324138723!GO:0045941;positive regulation of transcription;0.000422536360560087!GO:0030036;actin cytoskeleton organization and biogenesis;0.000429400526470839!GO:0005525;GTP binding;0.000486478992229336!GO:0003690;double-stranded DNA binding;0.000535499030021807!GO:0009165;nucleotide biosynthetic process;0.000538531393068186!GO:0045892;negative regulation of transcription, DNA-dependent;0.000596805303032396!GO:0005885;Arp2/3 protein complex;0.000629296198906026!GO:0006402;mRNA catabolic process;0.000631221525930601!GO:0048522;positive regulation of cellular process;0.000640503521734661!GO:0008033;tRNA processing;0.000641333642130918!GO:0051252;regulation of RNA metabolic process;0.000664093372773642!GO:0000786;nucleosome;0.000683265816633922!GO:0005874;microtubule;0.000705746899277031!GO:0007088;regulation of mitosis;0.00070836598570902!GO:0043021;ribonucleoprotein binding;0.000734867692173246!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000738896348322665!GO:0043681;protein import into mitochondrion;0.000765318481951439!GO:0031902;late endosome membrane;0.0008198162729189!GO:0045893;positive regulation of transcription, DNA-dependent;0.000852828230817835!GO:0006626;protein targeting to mitochondrion;0.000856049016269327!GO:0007052;mitotic spindle organization and biogenesis;0.000860168549330995!GO:0022890;inorganic cation transmembrane transporter activity;0.000860168549330995!GO:0030880;RNA polymerase complex;0.000898198911687737!GO:0005905;coated pit;0.000932988693184905!GO:0043488;regulation of mRNA stability;0.000955737843074032!GO:0043487;regulation of RNA stability;0.000955737843074032!GO:0045454;cell redox homeostasis;0.000980592736876487!GO:0007243;protein kinase cascade;0.00103994534671719!GO:0006352;transcription initiation;0.00111304068510373!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00115391856614943!GO:0003682;chromatin binding;0.0011572579249621!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00125357208514463!GO:0046474;glycerophospholipid biosynthetic process;0.00126869632379658!GO:0035258;steroid hormone receptor binding;0.0012792792577123!GO:0007017;microtubule-based process;0.0012964820238196!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00138157251515323!GO:0051052;regulation of DNA metabolic process;0.00140701852332366!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00146368435446644!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00159973200004299!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00159973200004299!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00159973200004299!GO:0010468;regulation of gene expression;0.00162107654910839!GO:0030663;COPI coated vesicle membrane;0.00163553849212776!GO:0030126;COPI vesicle coat;0.00163553849212776!GO:0031072;heat shock protein binding;0.00163760681984146!GO:0016272;prefoldin complex;0.00170899511718618!GO:0030029;actin filament-based process;0.00175690592568801!GO:0005684;U2-dependent spliceosome;0.00181604112022238!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00209368531092975!GO:0000428;DNA-directed RNA polymerase complex;0.00209368531092975!GO:0000059;protein import into nucleus, docking;0.00211093126091256!GO:0030137;COPI-coated vesicle;0.00211382112297436!GO:0030133;transport vesicle;0.00215415692080782!GO:0015631;tubulin binding;0.00221572363711143!GO:0044452;nucleolar part;0.0022571201423321!GO:0032561;guanyl ribonucleotide binding;0.00230218855932944!GO:0019001;guanyl nucleotide binding;0.00230218855932944!GO:0006401;RNA catabolic process;0.00232263433436032!GO:0042802;identical protein binding;0.00245861359274148!GO:0016363;nuclear matrix;0.00248821213602435!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00248994604900897!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00248994604900897!GO:0015399;primary active transmembrane transporter activity;0.00248994604900897!GO:0030521;androgen receptor signaling pathway;0.00282285883922146!GO:0003678;DNA helicase activity;0.00289408497897853!GO:0004674;protein serine/threonine kinase activity;0.00302080981193772!GO:0032508;DNA duplex unwinding;0.00320764978107174!GO:0032392;DNA geometric change;0.00320764978107174!GO:0043624;cellular protein complex disassembly;0.00322561330239634!GO:0065009;regulation of a molecular function;0.00325128582075552!GO:0005637;nuclear inner membrane;0.00332345648215642!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00337571865326118!GO:0015002;heme-copper terminal oxidase activity;0.00337571865326118!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00337571865326118!GO:0004129;cytochrome-c oxidase activity;0.00337571865326118!GO:0043284;biopolymer biosynthetic process;0.00343866112700617!GO:0006950;response to stress;0.00343866112700617!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00347073814347078!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00347073814347078!GO:0046489;phosphoinositide biosynthetic process;0.00359022189226963!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00367500520408072!GO:0048500;signal recognition particle;0.00372964031457569!GO:0008139;nuclear localization sequence binding;0.00379094357385597!GO:0030176;integral to endoplasmic reticulum membrane;0.00380027796808587!GO:0006414;translational elongation;0.00387445310456954!GO:0006818;hydrogen transport;0.00387445310456954!GO:0016741;transferase activity, transferring one-carbon groups;0.00389247332198333!GO:0006595;polyamine metabolic process;0.00393748726364586!GO:0006383;transcription from RNA polymerase III promoter;0.00398806257112059!GO:0004527;exonuclease activity;0.00402924960771942!GO:0048487;beta-tubulin binding;0.00403207477750661!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00407365857313217!GO:0015992;proton transport;0.00409859980368081!GO:0016197;endosome transport;0.0041702745798559!GO:0008168;methyltransferase activity;0.00419648283261248!GO:0007093;mitotic cell cycle checkpoint;0.00419816153604944!GO:0043596;nuclear replication fork;0.00422165874701054!GO:0048471;perinuclear region of cytoplasm;0.00447907578439453!GO:0032774;RNA biosynthetic process;0.00454004556305395!GO:0065007;biological regulation;0.00480440820607723!GO:0030518;steroid hormone receptor signaling pathway;0.00490784210312864!GO:0006611;protein export from nucleus;0.00497344565885426!GO:0032984;macromolecular complex disassembly;0.00504652520275199!GO:0003684;damaged DNA binding;0.00505085611071174!GO:0043241;protein complex disassembly;0.00514032686247763!GO:0006351;transcription, DNA-dependent;0.00515117784438931!GO:0006310;DNA recombination;0.00530303090547847!GO:0005876;spindle microtubule;0.00532006407335361!GO:0006268;DNA unwinding during replication;0.00532006407335361!GO:0016251;general RNA polymerase II transcription factor activity;0.0053821236101255!GO:0007040;lysosome organization and biogenesis;0.00540482730041417!GO:0030132;clathrin coat of coated pit;0.00599975268083677!GO:0051087;chaperone binding;0.00616693354542165!GO:0006405;RNA export from nucleus;0.0062886481649827!GO:0043433;negative regulation of transcription factor activity;0.00640541940071176!GO:0030134;ER to Golgi transport vesicle;0.0065046758760771!GO:0044262;cellular carbohydrate metabolic process;0.00654305206535136!GO:0046467;membrane lipid biosynthetic process;0.00666644677617779!GO:0003702;RNA polymerase II transcription factor activity;0.00715239135814854!GO:0006275;regulation of DNA replication;0.0071805095758235!GO:0051287;NAD binding;0.00750293269572376!GO:0040008;regulation of growth;0.00759754708141111!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00779663722210947!GO:0051539;4 iron, 4 sulfur cluster binding;0.00788458929878331!GO:0019206;nucleoside kinase activity;0.00796511850894519!GO:0007033;vacuole organization and biogenesis;0.00796511850894519!GO:0031124;mRNA 3'-end processing;0.00796849425559031!GO:0006891;intra-Golgi vesicle-mediated transport;0.00845847121005316!GO:0030118;clathrin coat;0.00861549865234033!GO:0004177;aminopeptidase activity;0.00886786138370074!GO:0030027;lamellipodium;0.00890158463330211!GO:0008180;signalosome;0.00904756322140431!GO:0030127;COPII vesicle coat;0.00910475412673882!GO:0012507;ER to Golgi transport vesicle membrane;0.00910475412673882!GO:0000922;spindle pole;0.00910941839446031!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00944827112680188!GO:0031901;early endosome membrane;0.010069404762648!GO:0006270;DNA replication initiation;0.0100780319907649!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0108436350669946!GO:0007021;tubulin folding;0.0110542060832362!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0112443143121466!GO:0045047;protein targeting to ER;0.0112443143121466!GO:0017166;vinculin binding;0.0113234105070678!GO:0050681;androgen receptor binding;0.0115701825299453!GO:0046519;sphingoid metabolic process;0.011808752073973!GO:0050662;coenzyme binding;0.011809180964325!GO:0033673;negative regulation of kinase activity;0.0118375857869015!GO:0006469;negative regulation of protein kinase activity;0.0118375857869015!GO:0045449;regulation of transcription;0.0119326667855443!GO:0005791;rough endoplasmic reticulum;0.0121860489346148!GO:0051540;metal cluster binding;0.0123077608266775!GO:0051536;iron-sulfur cluster binding;0.0123077608266775!GO:0051128;regulation of cellular component organization and biogenesis;0.0123769943057281!GO:0030658;transport vesicle membrane;0.0129607922224768!GO:0007050;cell cycle arrest;0.0136301268342666!GO:0005832;chaperonin-containing T-complex;0.0140536163470591!GO:0043601;nuclear replisome;0.014143890353055!GO:0030894;replisome;0.014143890353055!GO:0008312;7S RNA binding;0.0141489079119159!GO:0006376;mRNA splice site selection;0.014398925674605!GO:0000389;nuclear mRNA 3'-splice site recognition;0.014398925674605!GO:0008047;enzyme activator activity;0.0145102498305993!GO:0006839;mitochondrial transport;0.0147519324499923!GO:0008017;microtubule binding;0.0153024672754257!GO:0000118;histone deacetylase complex;0.0153523347847604!GO:0000049;tRNA binding;0.0154862410134791!GO:0051348;negative regulation of transferase activity;0.0155137398466718!GO:0051920;peroxiredoxin activity;0.0161536855190459!GO:0022415;viral reproductive process;0.0164356175394226!GO:0005774;vacuolar membrane;0.0164562530431112!GO:0001726;ruffle;0.0169848951097846!GO:0043492;ATPase activity, coupled to movement of substances;0.0169902737385905!GO:0051059;NF-kappaB binding;0.017497209196059!GO:0000152;nuclear ubiquitin ligase complex;0.017497209196059!GO:0003711;transcription elongation regulator activity;0.0184906843143535!GO:0008250;oligosaccharyl transferase complex;0.0191607732436357!GO:0005680;anaphase-promoting complex;0.0192349145789313!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0194404604307888!GO:0006509;membrane protein ectodomain proteolysis;0.0195249805778417!GO:0033619;membrane protein proteolysis;0.0195249805778417!GO:0030659;cytoplasmic vesicle membrane;0.0195262079894466!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0195421771011061!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0196198608824402!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0201798820320849!GO:0030522;intracellular receptor-mediated signaling pathway;0.0206177262218768!GO:0045936;negative regulation of phosphate metabolic process;0.0206930131602367!GO:0008243;plasminogen activator activity;0.0208110098960226!GO:0009116;nucleoside metabolic process;0.0208845162270408!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0211687716701336!GO:0048146;positive regulation of fibroblast proliferation;0.0212546821905931!GO:0007030;Golgi organization and biogenesis;0.0213890300613606!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0214580751022486!GO:0016044;membrane organization and biogenesis;0.0215054821872319!GO:0008092;cytoskeletal protein binding;0.0220259487002324!GO:0043414;biopolymer methylation;0.0220877926128146!GO:0006650;glycerophospholipid metabolic process;0.0221358952490305!GO:0030041;actin filament polymerization;0.0224062375502212!GO:0030433;ER-associated protein catabolic process;0.0225711952242003!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0225711952242003!GO:0006740;NADPH regeneration;0.0225740078277579!GO:0006098;pentose-phosphate shunt;0.0225740078277579!GO:0007346;regulation of progression through mitotic cell cycle;0.0230835246511671!GO:0043022;ribosome binding;0.0231746976250908!GO:0005869;dynactin complex;0.0235039991412224!GO:0008154;actin polymerization and/or depolymerization;0.0236145850428194!GO:0006672;ceramide metabolic process;0.0238721953630346!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0241601020805369!GO:0045045;secretory pathway;0.0244984662211136!GO:0031570;DNA integrity checkpoint;0.0245305103879052!GO:0032200;telomere organization and biogenesis;0.024928794058453!GO:0000723;telomere maintenance;0.024928794058453!GO:0005096;GTPase activator activity;0.0251021301786498!GO:0003746;translation elongation factor activity;0.0251252266371607!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0252664435520369!GO:0046483;heterocycle metabolic process;0.025489741203289!GO:0008538;proteasome activator activity;0.026319626263133!GO:0008022;protein C-terminus binding;0.026338626716452!GO:0006417;regulation of translation;0.026338626716452!GO:0006338;chromatin remodeling;0.0264552407906953!GO:0030865;cortical cytoskeleton organization and biogenesis;0.026730846978666!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0269903065708783!GO:0032259;methylation;0.0272996000925619!GO:0006506;GPI anchor biosynthetic process;0.0273053507837732!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0273053507837732!GO:0048144;fibroblast proliferation;0.0276272452947833!GO:0048145;regulation of fibroblast proliferation;0.0276272452947833!GO:0030660;Golgi-associated vesicle membrane;0.0288918224898349!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0289652516403624!GO:0009893;positive regulation of metabolic process;0.0290402429021878!GO:0044433;cytoplasmic vesicle part;0.0291960765251648!GO:0007034;vacuolar transport;0.0295829058728355!GO:0005669;transcription factor TFIID complex;0.0295829058728355!GO:0031123;RNA 3'-end processing;0.0298601013836061!GO:0000819;sister chromatid segregation;0.0299957375152004!GO:0030508;thiol-disulfide exchange intermediate activity;0.0302964442577885!GO:0003677;DNA binding;0.0303269166884658!GO:0043189;H4/H2A histone acetyltransferase complex;0.0303575549615455!GO:0031625;ubiquitin protein ligase binding;0.0309954322886788!GO:0031529;ruffle organization and biogenesis;0.0317375119939921!GO:0006354;RNA elongation;0.0318014298496385!GO:0004518;nuclease activity;0.0322913905772078!GO:0046128;purine ribonucleoside metabolic process;0.0333035176288228!GO:0042278;purine nucleoside metabolic process;0.0333035176288228!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0333035176288228!GO:0006505;GPI anchor metabolic process;0.0336153838429306!GO:0044437;vacuolar part;0.0336153838429306!GO:0006220;pyrimidine nucleotide metabolic process;0.0336153838429306!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0337867045761949!GO:0022411;cellular component disassembly;0.0340885022241543!GO:0046966;thyroid hormone receptor binding;0.0342316214142405!GO:0004576;oligosaccharyl transferase activity;0.0348537277730678!GO:0030119;AP-type membrane coat adaptor complex;0.0348842347740678!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0351941168238238!GO:0048518;positive regulation of biological process;0.0352233654487177!GO:0042326;negative regulation of phosphorylation;0.0356213297778255!GO:0031326;regulation of cellular biosynthetic process;0.0357238450351935!GO:0022408;negative regulation of cell-cell adhesion;0.0359715710480037!GO:0006497;protein amino acid lipidation;0.0359773460628766!GO:0009451;RNA modification;0.0360180340586989!GO:0051101;regulation of DNA binding;0.0360180340586989!GO:0005875;microtubule associated complex;0.0361267105376547!GO:0019752;carboxylic acid metabolic process;0.0363103932759459!GO:0009889;regulation of biosynthetic process;0.0368097388454296!GO:0005652;nuclear lamina;0.0370612883206907!GO:0008610;lipid biosynthetic process;0.0372580751000833!GO:0035035;histone acetyltransferase binding;0.0374726836655217!GO:0046426;negative regulation of JAK-STAT cascade;0.0378095242752091!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.038013760289345!GO:0000070;mitotic sister chromatid segregation;0.0384148405773741!GO:0009112;nucleobase metabolic process;0.0394161487434477!GO:0018196;peptidyl-asparagine modification;0.0394345877695899!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0394345877695899!GO:0004003;ATP-dependent DNA helicase activity;0.0395240349670572!GO:0005765;lysosomal membrane;0.0399378342497953!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0399378342497953!GO:0000725;recombinational repair;0.0399815606504683!GO:0000724;double-strand break repair via homologous recombination;0.0399815606504683!GO:0004523;ribonuclease H activity;0.0399815606504683!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0401980948023842!GO:0010257;NADH dehydrogenase complex assembly;0.0401980948023842!GO:0033108;mitochondrial respiratory chain complex assembly;0.0401980948023842!GO:0000339;RNA cap binding;0.0404129169135115!GO:0006378;mRNA polyadenylation;0.0409631786870345!GO:0007006;mitochondrial membrane organization and biogenesis;0.0417519863885982!GO:0000910;cytokinesis;0.0422743576031874!GO:0051098;regulation of binding;0.0423001054364872!GO:0030384;phosphoinositide metabolic process;0.0428280608061277!GO:0004228;gelatinase A activity;0.0429109635234795!GO:0001955;blood vessel maturation;0.0429109635234795!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0429109635234795!GO:0000781;chromosome, telomeric region;0.0437247115620506!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0438339334386358!GO:0001953;negative regulation of cell-matrix adhesion;0.0443214448588448!GO:0000096;sulfur amino acid metabolic process;0.0443220087333048!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0451007370804957!GO:0000792;heterochromatin;0.0451846104961863!GO:0006082;organic acid metabolic process;0.0452719506237276!GO:0031577;spindle checkpoint;0.0459206471357215!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0462087729455228!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0462087729455228!GO:0030149;sphingolipid catabolic process;0.0462087729455228!GO:0009124;nucleoside monophosphate biosynthetic process;0.0462087729455228!GO:0009123;nucleoside monophosphate metabolic process;0.0462087729455228!GO:0005521;lamin binding;0.0472271991678374!GO:0006118;electron transport;0.0472271991678374!GO:0006607;NLS-bearing substrate import into nucleus;0.0473771282983805!GO:0006984;ER-nuclear signaling pathway;0.0473898284286571!GO:0030833;regulation of actin filament polymerization;0.0475186531346273!GO:0030032;lamellipodium biogenesis;0.0475186531346273!GO:0046983;protein dimerization activity;0.0475284908241824!GO:0045792;negative regulation of cell size;0.0475510624787925!GO:0030503;regulation of cell redox homeostasis;0.0482137582990542!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0488659883113714!GO:0016581;NuRD complex;0.0493460727759806!GO:0051053;negative regulation of DNA metabolic process;0.0494801585157229!GO:0006778;porphyrin metabolic process;0.049692598276305!GO:0033013;tetrapyrrole metabolic process;0.049692598276305!GO:0000123;histone acetyltransferase complex;0.0497031219985357!GO:0035267;NuA4 histone acetyltransferase complex;0.0499313996604555 | |||
|sample_id=10684 | |sample_id=10684 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=unclassifiable | |sample_tissue=unclassifiable | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.75059758101;HOX{A4,D4}:1.49675078236;ZNF238:1.44841204252;HBP1_HMGB_SSRP1_UBTF:1.28764013759;HES1:1.21814747026;TFDP1:1.19681297782;E2F1..5:1.1258781841;GFI1B:1.11747203136;EN1,2:1.10948536258;GFI1:1.089953369;FOXQ1:1.02180001229;PBX1:1.01131694716;NFY{A,B,C}:1.00829191455;ELK1,4_GABP{A,B1}:1.00498818573;CDC5L:0.992148608576;bHLH_family:0.889825831203;ZBTB16:0.877821277231;SREBF1,2:0.850602035696;MYB:0.829976411407;NKX6-1,2:0.81791235962;PAX3,7:0.782322646107;ZNF384:0.781391388434;FOXD3:0.755760027908;GZF1:0.654173907259;NFIX:0.602195319335;ZNF143:0.561645138375;PAX1,9:0.546764278107;XBP1:0.545330537492;VSX1,2:0.509225086339;TEF:0.495907765142;TLX1..3_NFIC{dimer}:0.494739881681;PAX4:0.489327034152;FOS_FOS{B,L1}_JUN{B,D}:0.479326987925;SOX{8,9,10}:0.459108523897;YY1:0.451946159106;POU6F1:0.444017791322;EVI1:0.433646473597;PAX8:0.408585758802;NFE2:0.397772571451;POU1F1:0.394452101365;NR1H4:0.393813387984;NKX2-2,8:0.386315981033;ALX1:0.381267406034;PDX1:0.378515897244;NFE2L2:0.375631627483;PAX2:0.37385342879;POU3F1..4:0.368721950865;FOX{I1,J2}:0.367136449212;NR6A1:0.356657167511;NKX3-1:0.354561706833;CREB1:0.346185415502;GTF2I:0.343726094658;TAL1_TCF{3,4,12}:0.33729582095;AHR_ARNT_ARNT2:0.331875039828;TFAP2B:0.316081859552;TOPORS:0.313685111471;CUX2:0.307331939377;BACH2:0.303429213128;FOXP1:0.302747683856;PPARG:0.301319241577;NHLH1,2:0.290743468792;BREu{core}:0.279935546726;FOSL2:0.278440528089;MTE{core}:0.271751427961;ATF5_CREB3:0.259598589234;ADNP_IRX_SIX_ZHX:0.254259525185;HOX{A5,B5}:0.247352522344;DMAP1_NCOR{1,2}_SMARC:0.246213878653;NFATC1..3:0.24261170986;PAX6:0.232874930134;ARID5B:0.228726074133;GTF2A1,2:0.226644117615;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.225686899158;PAX5:0.212526900172;PRRX1,2:0.212084261022;TEAD1:0.20423830674;ZBTB6:0.194280895269;RFX1:0.190563738127;CRX:0.18802696491;MAFB:0.186509790665;MED-1{core}:0.186057701978;AIRE:0.181939930342;STAT2,4,6:0.170911310951;NRF1:0.160372975089;UFEwm:0.159150082492;ATF6:0.15474095554;TLX2:0.147435175584;PRDM1:0.146816466977;MYFfamily:0.146606109128;FOXL1:0.131082888583;MYBL2:0.130839232431;ZFP161:0.122963648957;ALX4:0.1208252592;HLF:0.105317927758;ATF4:0.10318236966;NKX2-1,4:0.101879909992;LHX3,4:0.100194594629;FOXO1,3,4:0.0739043731141;POU2F1..3:0.0547851421078;HOXA9_MEIS1:0.0432162440891;XCPE1{core}:0.0285493983128;STAT5{A,B}:0.0162129676491;JUN:0.00106276629898;NFIL3:-0.00120247257353;LEF1_TCF7_TCF7L1,2:-0.0176539552469;MZF1:-0.0246854835807;ESR1:-0.0366521381909;BPTF:-0.0405889992885;ELF1,2,4:-0.0447220546402;POU5F1:-0.0484324617947;TBX4,5:-0.0562321384176;FOXA2:-0.0725769425373;RUNX1..3:-0.0883054299214;TFCP2:-0.0883760407874;ATF2:-0.0932975357154;PITX1..3:-0.0937365937205;RXR{A,B,G}:-0.102614373411;HIC1:-0.125956941139;ESRRA:-0.127826848931;SOX17:-0.136710435229;STAT1,3:-0.139534024266;IKZF1:-0.140316341032;TP53:-0.142797567987;PATZ1:-0.15928935863;EGR1..3:-0.169952024826;TFAP2{A,C}:-0.173831363013;HNF1A:-0.177823271506;CDX1,2,4:-0.17857992381;MTF1:-0.18331298021;IKZF2:-0.186361590771;RFX2..5_RFXANK_RFXAP:-0.207016970672;FOXN1:-0.214372753021;NKX3-2:-0.219028092969;HNF4A_NR2F1,2:-0.222856911838;NFKB1_REL_RELA:-0.229035986055;TFAP4:-0.229609192312;MEF2{A,B,C,D}:-0.231453632577;SRF:-0.240088708377;RORA:-0.240511122772;SP1:-0.242998820682;NFE2L1:-0.245972160958;TBP:-0.253540889341;HSF1,2:-0.282227224805;RXRA_VDR{dimer}:-0.293781805886;FOX{D1,D2}:-0.304574130921;SPI1:-0.319043113238;ONECUT1,2:-0.323322845967;DBP:-0.32840643335;HIF1A:-0.329934137713;NANOG{mouse}:-0.3308724827;AR:-0.331208767494;KLF4:-0.354183832904;IRF1,2:-0.371486732758;GATA6:-0.376101453334;SOX5:-0.386401034515;FOXP3:-0.386762486588;OCT4_SOX2{dimer}:-0.393636384082;HAND1,2:-0.420269892239;CEBPA,B_DDIT3:-0.424055501923;REST:-0.440746264623;MAZ:-0.442929957113;GATA4:-0.452542413445;SPIB:-0.464940190593;IRF7:-0.465327985295;ETS1,2:-0.46734382462;RBPJ:-0.488671849883;ZIC1..3:-0.505291060956;HOX{A6,A7,B6,B7}:-0.531804626751;SPZ1:-0.532238301293;LMO2:-0.547973430946;NKX2-3_NKX2-5:-0.584423471698;TGIF1:-0.586536581543;RREB1:-0.629686540162;FOX{F1,F2,J1}:-0.645599379247;GLI1..3:-0.726334249244;GCM1,2:-0.731835112275;HMX1:-0.7431125887;SMAD1..7,9:-0.743937117855;FOXM1:-0.754321368839;NR3C1:-0.762229722575;NR5A1,2:-0.780337432028;ZNF423:-0.821592483554;ZNF148:-0.870350697812;SOX2:-0.919380122594;NANOG:-0.971631252924;EBF1:-0.98019957915;HMGA1,2:-1.03138906305;MYOD1:-1.08503148607;ZEB1:-1.16290937701;SNAI1..3:-1.16884148619;T:-1.18428191842;EP300:-1.30139249992 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.75059758101;HOX{A4,D4}:1.49675078236;ZNF238:1.44841204252;HBP1_HMGB_SSRP1_UBTF:1.28764013759;HES1:1.21814747026;TFDP1:1.19681297782;E2F1..5:1.1258781841;GFI1B:1.11747203136;EN1,2:1.10948536258;GFI1:1.089953369;FOXQ1:1.02180001229;PBX1:1.01131694716;NFY{A,B,C}:1.00829191455;ELK1,4_GABP{A,B1}:1.00498818573;CDC5L:0.992148608576;bHLH_family:0.889825831203;ZBTB16:0.877821277231;SREBF1,2:0.850602035696;MYB:0.829976411407;NKX6-1,2:0.81791235962;PAX3,7:0.782322646107;ZNF384:0.781391388434;FOXD3:0.755760027908;GZF1:0.654173907259;NFIX:0.602195319335;ZNF143:0.561645138375;PAX1,9:0.546764278107;XBP1:0.545330537492;VSX1,2:0.509225086339;TEF:0.495907765142;TLX1..3_NFIC{dimer}:0.494739881681;PAX4:0.489327034152;FOS_FOS{B,L1}_JUN{B,D}:0.479326987925;SOX{8,9,10}:0.459108523897;YY1:0.451946159106;POU6F1:0.444017791322;EVI1:0.433646473597;PAX8:0.408585758802;NFE2:0.397772571451;POU1F1:0.394452101365;NR1H4:0.393813387984;NKX2-2,8:0.386315981033;ALX1:0.381267406034;PDX1:0.378515897244;NFE2L2:0.375631627483;PAX2:0.37385342879;POU3F1..4:0.368721950865;FOX{I1,J2}:0.367136449212;NR6A1:0.356657167511;NKX3-1:0.354561706833;CREB1:0.346185415502;GTF2I:0.343726094658;TAL1_TCF{3,4,12}:0.33729582095;AHR_ARNT_ARNT2:0.331875039828;TFAP2B:0.316081859552;TOPORS:0.313685111471;CUX2:0.307331939377;BACH2:0.303429213128;FOXP1:0.302747683856;PPARG:0.301319241577;NHLH1,2:0.290743468792;BREu{core}:0.279935546726;FOSL2:0.278440528089;MTE{core}:0.271751427961;ATF5_CREB3:0.259598589234;ADNP_IRX_SIX_ZHX:0.254259525185;HOX{A5,B5}:0.247352522344;DMAP1_NCOR{1,2}_SMARC:0.246213878653;NFATC1..3:0.24261170986;PAX6:0.232874930134;ARID5B:0.228726074133;GTF2A1,2:0.226644117615;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.225686899158;PAX5:0.212526900172;PRRX1,2:0.212084261022;TEAD1:0.20423830674;ZBTB6:0.194280895269;RFX1:0.190563738127;CRX:0.18802696491;MAFB:0.186509790665;MED-1{core}:0.186057701978;AIRE:0.181939930342;STAT2,4,6:0.170911310951;NRF1:0.160372975089;UFEwm:0.159150082492;ATF6:0.15474095554;TLX2:0.147435175584;PRDM1:0.146816466977;MYFfamily:0.146606109128;FOXL1:0.131082888583;MYBL2:0.130839232431;ZFP161:0.122963648957;ALX4:0.1208252592;HLF:0.105317927758;ATF4:0.10318236966;NKX2-1,4:0.101879909992;LHX3,4:0.100194594629;FOXO1,3,4:0.0739043731141;POU2F1..3:0.0547851421078;HOXA9_MEIS1:0.0432162440891;XCPE1{core}:0.0285493983128;STAT5{A,B}:0.0162129676491;JUN:0.00106276629898;NFIL3:-0.00120247257353;LEF1_TCF7_TCF7L1,2:-0.0176539552469;MZF1:-0.0246854835807;ESR1:-0.0366521381909;BPTF:-0.0405889992885;ELF1,2,4:-0.0447220546402;POU5F1:-0.0484324617947;TBX4,5:-0.0562321384176;FOXA2:-0.0725769425373;RUNX1..3:-0.0883054299214;TFCP2:-0.0883760407874;ATF2:-0.0932975357154;PITX1..3:-0.0937365937205;RXR{A,B,G}:-0.102614373411;HIC1:-0.125956941139;ESRRA:-0.127826848931;SOX17:-0.136710435229;STAT1,3:-0.139534024266;IKZF1:-0.140316341032;TP53:-0.142797567987;PATZ1:-0.15928935863;EGR1..3:-0.169952024826;TFAP2{A,C}:-0.173831363013;HNF1A:-0.177823271506;CDX1,2,4:-0.17857992381;MTF1:-0.18331298021;IKZF2:-0.186361590771;RFX2..5_RFXANK_RFXAP:-0.207016970672;FOXN1:-0.214372753021;NKX3-2:-0.219028092969;HNF4A_NR2F1,2:-0.222856911838;NFKB1_REL_RELA:-0.229035986055;TFAP4:-0.229609192312;MEF2{A,B,C,D}:-0.231453632577;SRF:-0.240088708377;RORA:-0.240511122772;SP1:-0.242998820682;NFE2L1:-0.245972160958;TBP:-0.253540889341;HSF1,2:-0.282227224805;RXRA_VDR{dimer}:-0.293781805886;FOX{D1,D2}:-0.304574130921;SPI1:-0.319043113238;ONECUT1,2:-0.323322845967;DBP:-0.32840643335;HIF1A:-0.329934137713;NANOG{mouse}:-0.3308724827;AR:-0.331208767494;KLF4:-0.354183832904;IRF1,2:-0.371486732758;GATA6:-0.376101453334;SOX5:-0.386401034515;FOXP3:-0.386762486588;OCT4_SOX2{dimer}:-0.393636384082;HAND1,2:-0.420269892239;CEBPA,B_DDIT3:-0.424055501923;REST:-0.440746264623;MAZ:-0.442929957113;GATA4:-0.452542413445;SPIB:-0.464940190593;IRF7:-0.465327985295;ETS1,2:-0.46734382462;RBPJ:-0.488671849883;ZIC1..3:-0.505291060956;HOX{A6,A7,B6,B7}:-0.531804626751;SPZ1:-0.532238301293;LMO2:-0.547973430946;NKX2-3_NKX2-5:-0.584423471698;TGIF1:-0.586536581543;RREB1:-0.629686540162;FOX{F1,F2,J1}:-0.645599379247;GLI1..3:-0.726334249244;GCM1,2:-0.731835112275;HMX1:-0.7431125887;SMAD1..7,9:-0.743937117855;FOXM1:-0.754321368839;NR3C1:-0.762229722575;NR5A1,2:-0.780337432028;ZNF423:-0.821592483554;ZNF148:-0.870350697812;SOX2:-0.919380122594;NANOG:-0.971631252924;EBF1:-0.98019957915;HMGA1,2:-1.03138906305;MYOD1:-1.08503148607;ZEB1:-1.16290937701;SNAI1..3:-1.16884148619;T:-1.18428191842;EP300:-1.30139249992 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10684-109E9;search_select_hide=table117:FF:10684-109E9 | |||
}} | }} | ||
Latest revision as of 14:32, 3 June 2020
| Name: | myxofibrosarcoma cell line:NMFH-1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11821 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11821
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11821
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.509 |
| 10 | 10 | 0.22 |
| 100 | 100 | 0.98 |
| 101 | 101 | 0.473 |
| 102 | 102 | 0.892 |
| 103 | 103 | 0.548 |
| 104 | 104 | 0.728 |
| 105 | 105 | 0.308 |
| 106 | 106 | 0.0387 |
| 107 | 107 | 0.337 |
| 108 | 108 | 0.219 |
| 109 | 109 | 0.695 |
| 11 | 11 | 0.281 |
| 110 | 110 | 0.42 |
| 111 | 111 | 0.0617 |
| 112 | 112 | 0.215 |
| 113 | 113 | 0.033 |
| 114 | 114 | 0.0196 |
| 115 | 115 | 0.86 |
| 116 | 116 | 0.929 |
| 117 | 117 | 0.967 |
| 118 | 118 | 0.411 |
| 119 | 119 | 0.0503 |
| 12 | 12 | 0.546 |
| 120 | 120 | 0.717 |
| 121 | 121 | 0.969 |
| 122 | 122 | 0.334 |
| 123 | 123 | 0.095 |
| 124 | 124 | 0.194 |
| 125 | 125 | 0.37 |
| 126 | 126 | 0.623 |
| 127 | 127 | 0.423 |
| 128 | 128 | 0.427 |
| 129 | 129 | 0.0921 |
| 13 | 13 | 0.329 |
| 130 | 130 | 0.0254 |
| 131 | 131 | 0.465 |
| 132 | 132 | 0.465 |
| 133 | 133 | 0.00672 |
| 134 | 134 | 0.338 |
| 135 | 135 | 0.12 |
| 136 | 136 | 0.534 |
| 137 | 137 | 0.625 |
| 138 | 138 | 0.587 |
| 139 | 139 | 1.05473e-4 |
| 14 | 14 | 0.412 |
| 140 | 140 | 0.015 |
| 141 | 141 | 0.345 |
| 142 | 142 | 0.669 |
| 143 | 143 | 0.0115 |
| 144 | 144 | 0.96 |
| 145 | 145 | 0.258 |
| 146 | 146 | 0.57 |
| 147 | 147 | 0.533 |
| 148 | 148 | 0.808 |
| 149 | 149 | 0.272 |
| 15 | 15 | 0.249 |
| 150 | 150 | 0.416 |
| 151 | 151 | 0.343 |
| 152 | 152 | 0.084 |
| 153 | 153 | 0.28 |
| 154 | 154 | 0.356 |
| 155 | 155 | 0.357 |
| 156 | 156 | 0.632 |
| 157 | 157 | 0.135 |
| 158 | 158 | 0.284 |
| 159 | 159 | 0.107 |
| 16 | 16 | 0.485 |
| 160 | 160 | 0.153 |
| 161 | 161 | 0.228 |
| 162 | 162 | 0.71 |
| 163 | 163 | 0.977 |
| 164 | 164 | 0.62 |
| 165 | 165 | 0.965 |
| 166 | 166 | 0.739 |
| 167 | 167 | 0.148 |
| 168 | 168 | 0.33 |
| 169 | 169 | 0.227 |
| 17 | 17 | 0.125 |
| 18 | 18 | 0.816 |
| 19 | 19 | 0.566 |
| 2 | 2 | 0.938 |
| 20 | 20 | 0.753 |
| 21 | 21 | 0.499 |
| 22 | 22 | 0.46 |
| 23 | 23 | 0.121 |
| 24 | 24 | 0.993 |
| 25 | 25 | 0.726 |
| 26 | 26 | 0.726 |
| 27 | 27 | 0.133 |
| 28 | 28 | 0.505 |
| 29 | 29 | 0.937 |
| 3 | 3 | 0.382 |
| 30 | 30 | 0.677 |
| 31 | 31 | 0.45 |
| 32 | 32 | 0.53 |
| 33 | 33 | 0.854 |
| 34 | 34 | 0.245 |
| 35 | 35 | 0.295 |
| 36 | 36 | 0.922 |
| 37 | 37 | 0.451 |
| 38 | 38 | 0.4 |
| 39 | 39 | 0.637 |
| 4 | 4 | 0.0761 |
| 40 | 40 | 0.219 |
| 41 | 41 | 0.0914 |
| 42 | 42 | 0.54 |
| 43 | 43 | 0.213 |
| 44 | 44 | 0.187 |
| 45 | 45 | 0.258 |
| 46 | 46 | 0.461 |
| 47 | 47 | 0.31 |
| 48 | 48 | 0.35 |
| 49 | 49 | 0.208 |
| 5 | 5 | 0.0684 |
| 50 | 50 | 0.993 |
| 51 | 51 | 0.416 |
| 52 | 52 | 0.141 |
| 53 | 53 | 0.56 |
| 54 | 54 | 0.519 |
| 55 | 55 | 0.731 |
| 56 | 56 | 0.524 |
| 57 | 57 | 0.49 |
| 58 | 58 | 0.227 |
| 59 | 59 | 0.0711 |
| 6 | 6 | 0.391 |
| 60 | 60 | 0.134 |
| 61 | 61 | 0.954 |
| 62 | 62 | 0.217 |
| 63 | 63 | 0.248 |
| 64 | 64 | 0.654 |
| 65 | 65 | 0.435 |
| 66 | 66 | 0.0911 |
| 67 | 67 | 0.613 |
| 68 | 68 | 0.117 |
| 69 | 69 | 0.332 |
| 7 | 7 | 0.262 |
| 70 | 70 | 0.114 |
| 71 | 71 | 0.441 |
| 72 | 72 | 0.708 |
| 73 | 73 | 0.269 |
| 74 | 74 | 0.13 |
| 75 | 75 | 0.859 |
| 76 | 76 | 0.936 |
| 77 | 77 | 0.123 |
| 78 | 78 | 0.0174 |
| 79 | 79 | 0.959 |
| 8 | 8 | 0.445 |
| 80 | 80 | 0.237 |
| 81 | 81 | 0.719 |
| 82 | 82 | 2.17527e-4 |
| 83 | 83 | 0.737 |
| 84 | 84 | 0.534 |
| 85 | 85 | 0.221 |
| 86 | 86 | 0.46 |
| 87 | 87 | 0.235 |
| 88 | 88 | 0.658 |
| 89 | 89 | 0.0562 |
| 9 | 9 | 0.72 |
| 90 | 90 | 0.239 |
| 91 | 91 | 0.328 |
| 92 | 92 | 0.0616 |
| 93 | 93 | 0.774 |
| 94 | 94 | 0.136 |
| 95 | 95 | 0.929 |
| 96 | 96 | 0.174 |
| 97 | 97 | 0.596 |
| 98 | 98 | 0.642 |
| 99 | 99 | 0.984 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11821
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002620 skin fibroblast
DOID:1907 malignant fibroxanthoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100460 fibrosarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
4231 (histiocytoma)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
1907 (malignant fibroxanthoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
