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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005921
|accession_numbers=CAGE;DRX007948;DRR008820;DRZ000245;DRZ001630;DRZ011595;DRZ012980
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:28321909..28321965,-!p3@ZNF323!1.56!35.65!ZNF323;;chr11:61520075..61520136,+!p1@C11orf9!1.55!71.29!C11orf9;;chr17:7493405..7493419,-!p1@SOX15!1.45!27.37!SOX15;;chr15:67418047..67418093,+!p4@SMAD3!1.39!29.40!SMAD3;;chr6:10415276..10415341,-!p2@TFAP2A!1.32!24.33!TFAP2A;;chr15:67418119..67418162,+!p5@SMAD3!1.27!19.43!SMAD3;;chr6:10412392..10412409,-!p4@TFAP2A!1.25!19.09!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!1.22!32.77!SOX15;;chr6:28321971..28321995,-!p1@ZNF323!1.22!15.71!ZNF323;;chr15:83953397..83953425,-!p1@BNC1!1.17!15.71!BNC1;;chr11:31832658..31832681,-!p1@PAX6!1.16!13.52!PAX6;;chr6:10412600..10412637,-!p1@TFAP2A!1.13!20.61!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.08!67.24!ID4;;chr5:134369905..134369972,-!p1@PITX1!1.07!16.73!PITX1;;chr11:615570..615721,-!p2@IRF7!1.03!19.43!IRF7;;chr6:85473156..85473210,-!p2@TBX18!1.03!11.99!TBX18;;chr6:126240380..126240430,+!p2@NCOA7!1.02!24.83!NCOA7;;chr15:67418177..67418204,+!p9@SMAD3!0.99!8.79!SMAD3;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.48!OSR1;;chr5:2751762..2751784,-!p1@IRX2!0.97!8.28!IRX2;;chr7:149470540..149470596,-!p2@ZNF467!0.96!10.81!ZNF467;;chr8:106330656..106330684,+!p1@ZFPM2!0.94!20.61!ZFPM2;;chr6:126240356..126240379,+!p7@NCOA7!0.94!9.46!NCOA7;;chr7:26191809..26191890,+!p1@NFE2L3!0.89!35.48!NFE2L3;;chr7:35293685..35293718,-!p1@TBX20!0.87!6.42!TBX20;;chr19:13134772..13134822,+!p2@NFIX!0.85!9.29!NFIX;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.91!KDM5D;;chr3:141747459..141747475,-!p1@TFDP2!0.83!51.53!TFDP2;;chr8:37963466..37963506,+!p3@ASH2L!0.83!7.26!ASH2L;;chr11:32457075..32457095,-!p1@WT1!0.83!5.74!WT1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.82!7.26!L3MBTL4;;chr15:37390374..37390422,-!p9@MEIS2!0.81!6.93!MEIS2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.81!5.41!SEBOX;;chr1:44513995..44514031,+!p1@KLF17!0.81!5.41!KLF17;;chr17:41277372..41277418,-!p1@BRCA1!0.80!20.78!BRCA1;;chr18:19749541..19749557,+!p1@GATA6!0.80!17.91!GATA6;;chr3:128206762..128206781,-!p2@GATA2!0.79!35.31!GATA2;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.51!ZNF467;;chr8:37963407..37963454,+!p2@ASH2L!0.79!16.39!ASH2L;;chr15:37390482..37390572,-!p7@MEIS2!0.79!7.26!MEIS2;;chr5:3595934..3595957,+!p2@IRX1!0.78!5.07!IRX1;;chrY:2803415..2803468,+!p1@ZFY!0.78!5.07!ZFY;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.70!EPAS1;;chr14:24630902..24630948,+!p2@IRF9!0.77!6.08!IRF9;;chr5:92918919..92918942,+!p1@NR2F1!0.76!23.48!NR2F1;;chr11:31832610..31832639,-!p5@PAX6!0.76!4.73!PAX6;;chr11:65667884..65667895,-!p2@FOSL1!0.75!19.60!FOSL1;;chr15:37392616..37392638,-!p2@MEIS2!0.75!15.88!MEIS2;;chr3:114343768..114343822,-!p1@ZBTB20!0.74!21.46!ZBTB20;;chr11:120107344..120107351,+!p1@POU2F3!0.74!5.58!POU2F3;;chr12:104531823..104531849,-!p5@NFYB!0.72!9.46!NFYB;;chr1:158985493..158985535,+!p4@IFI16!0.72!6.76!IFI16;;chr8:106330696..106330719,+!p2@ZFPM2!0.72!5.58!ZFPM2;;chrX:30327504..30327509,-!p1@NR0B1!0.72!4.22!NR0B1;;chr15:67418099..67418118,+!p16@SMAD3!0.72!4.22!SMAD3;;chr11:615942..615957,-!p1@IRF7!0.71!44.26!IRF7;;chr5:92919100..92919135,+!p3@NR2F1!0.70!5.07!NR2F1;;chr6:28321827..28321856,-!p5@ZNF323!0.70!4.05!ZNF323;;chr15:96869255..96869291,+!p6@NR2F2!0.69!7.60!NR2F2;;chr15:96869292..96869320,+!p15@NR2F2!0.69!5.91!NR2F2;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.89!CUX1;;chr20:30193083..30193098,+!p1@ID1!0.67!348.19!ID1;;chr3:114343826..114343869,-!p4@ZBTB20!0.67!7.94!ZBTB20;;chr5:3595977..3595999,+!p1@IRX1!0.67!3.72!IRX1;;chr7:64023410..64023428,-!p2@ZNF680!0.66!6.08!ZNF680;;chr8:10588010..10588030,-!p1@SOX7!0.66!3.55!SOX7;;chr4:299227..299272,-!p1@ZNF732!0.66!3.55!ZNF732;;chr12:2986206..2986258,-!p2@FOXM1!0.65!24.50!FOXM1;;chr15:37392724..37392757,-!p1@MEIS2!0.65!18.25!MEIS2;;chr12:2986275..2986363,-!p1@FOXM1!0.64!40.04!FOXM1;;chr20:61051039..61051057,-!p1@GATA5!0.64!3.38!GATA5;;chr7:19157043..19157088,-!p2@TWIST1!0.62!9.12!TWIST1;;chr16:79633894..79633954,-!p3@MAF!0.62!6.76!MAF;;chr19:13134457..13134462,+!p5@NFIX!0.62!6.25!NFIX;;chr2:231084639..231084654,-!p2@SP110!0.62!5.74!SP110;;chr1:158985469..158985489,+!p7@IFI16!0.62!3.89!IFI16;;chr9:130966497..130966541,-!p4@CIZ1!0.62!3.21!CIZ1;;chr11:65667846..65667868,-!p1@FOSL1!0.61!98.32!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.61!11.66!NR2F1;;chr12:80084167..80084197,-!p5@PAWR!0.61!8.11!PAWR;;chr6:85474299..85474324,-!p1@TBX18!0.61!6.08!TBX18;;chr10:35415951..35415975,+!p8@CREM!0.61!4.56!CREM;;chr15:37392576..37392589,-!p12@MEIS2!0.61!3.89!MEIS2;;chr15:83953373..83953386,-!p2@BNC1!0.61!3.04!BNC1;;chr16:85932760..85932775,+!p1@IRF8!0.61!3.04!IRF8;;chr3:128207349..128207386,-!p3@GATA2!0.61!3.04!GATA2;;chr12:66218836..66218888,+!p1@HMGA2!0.60!33.62!HMGA2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.60!16.22!TAL1;;chr17:46655730..46655791,-!p1@HOXB4!0.60!8.45!HOXB4;;chr16:8962544..8962584,-!p2@CARHSP1!0.60!7.77!CARHSP1;;chr15:37392094..37392116,-!p6@MEIS2!0.60!3.89!MEIS2;;chr11:65687362..65687436,+!p3@DRAP1!0.59!15.54!DRAP1;;chr16:8962202..8962222,-!p3@CARHSP1!0.59!5.74!CARHSP1;;chr11:32457103..32457123,-!p3@WT1!0.59!2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;chr19:56110859..56110917,-!p1@FIZ1!0.14!7.43!FIZ1;;chr19:21264991..21265026,+!p1@ZNF714!0.14!7.43!ZNF714;;chr19:53898380..53898422,+!p1@ZNF765!0.14!6.93!ZNF765;;chr6:28317685..28317761,+!p1@ZKSCAN3!0.14!5.58!ZKSCAN3;;chr6:28220023..28220053,-!p1@ZKSCAN4!0.14!4.73!ZKSCAN4;;chr1:8585945..8586056,-!p3@RERE!0.14!3.38!RERE;;chr1:211433275..211433335,+!p2@RCOR3!0.14!3.04!RCOR3;;chr2:148778570..148778589,+!p4@MBD5!0.14!3.04!MBD5;;chr12:6798056..6798102,-!p3@ZNF384!0.14!2.87!ZNF384;;chr4:1873155..1873185,+!p3@WHSC1!0.14!2.70!WHSC1;;chr1:8483756..8483809,-!p5@RERE!0.14!2.70!RERE;;chr2:172967621..172967637,-!p1@DLX2!0.14!2.53!DLX2;;chr19:20150301..20150321,-!p1@ZNF682!0.14!2.37!ZNF682;;chr19:46271505..46271575,-!p2@SIX5!0.14!2.37!SIX5;;chr12:133758115..133758138,+!p3@ZNF268!0.14!2.20!ZNF268;;chr1:211432887..211432903,+!p4@RCOR3!0.14!2.03!RCOR3;;chr19:52839515..52839572,+!p1@ZNF610!0.14!1.86!ZNF610;;chr10:77161133..77161176,-!p3@ZNF503!0.14!1.86!ZNF503;;chr6:41514005..41514026,+!p3@FOXP4!0.14!1.86!FOXP4;;chr1:151253991..151254031,+!p2@ZNF687!0.14!1.52!ZNF687;;chr7:86781858..86781879,+!p3@DMTF1!0.14!1.18!DMTF1;;chr10:21823381..21823399,+!p4@MLLT10!0.14!1.18!MLLT10;;chr4:87968203..87968221,+!p11@AFF1!0.14!1.18!AFF1;;chr4:87928105..87928126,+!p13@AFF1!0.14!1.01!AFF1;;chr12:125002739..125002756,-!p6@NCOR2!0.14!1.01!NCOR2;;chr19:57019215..57019250,+!p1@ZNF471!0.14!1.01!ZNF471;;chr15:57210795..57210809,+!p8@TCF12!0.14!1.01!TCF12;;chr19:3366625..3366629,+!p4@NFIC!0.14!1.01!NFIC;;chr16:30546275..30546297,-!p2@ZNF747!0.14!0.84!ZNF747;;chr17:46621101..46621143,-!p7@HOXB2!0.14!0.84!HOXB2;;chr19:11750566..11750627,+!p1@ZNF833P!0.14!0.84!ZNF833P;;chr16:86544113..86544145,+!p1@FOXF1!0.14!0.68!FOXF1;;chr16:69419724..69419735,-!p4@TERF2!0.14!0.51!TERF2;;chr18:3448314..3448333,+!p18@TGIF1!0.14!0.51!TGIF1;;chr2:24930425..24930435,+!p4@NCOA1!0.14!0.51!NCOA1;;chr6:134273586..134273611,+!p5@TBPL1!0.14!0.51!TBPL1;;chr19:52772811..52772817,+!p3@ZNF766!0.14!0.51!ZNF766;;chrX:101187036..101187056,-!p2@ZMAT1!0.14!0.51!ZMAT1;;chr6:34204642..34204664,+!p2@HMGA1!0.13!163.87!HMGA1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.13!126.20!ZFP36L1;;chr12:56753869..56753930,-!p1@STAT2!0.13!53.22!STAT2;;chr10:135122380..135122458,+!p1@ZNF511!0.13!36.83!ZNF511;;chr7:108210048..108210169,-!p1@THAP5,p2@PNPLA8!0.13!36.49!THAP5;;chr16:30798492..30798535,-!p1@ZNF629!0.13!18.58!ZNF629;;chr2:75937994..75938054,-!p1@GCFC2!0.13!16.73!GCFC2;;chr19:35168567..35168620,+!p1@ZNF302!0.13!13.52!ZNF302;;chr1:246729544..246729572,-!p1@TFB2M!0.13!11.32!TFB2M;;chr19:52490043..52490113,-!p1@ZNF350!0.13!8.95!ZNF350;;chr16:89284104..89284150,+!p1@ZNF778!0.13!7.94!ZNF778;;chr17:17740330..17740349,-!p3@SREBF1!0.13!7.43!SREBF1;;chr1:161736072..161736093,+!p2@ATF6!0.13!4.90!ATF6;;chr6:20403916..20403965,+!p3@E2F3!0.13!4.73!E2F3;;chr15:77713025..77713081,+!p2@HMG20A!0.13!4.56!HMG20A;;chr1:43148792..43148849,+!p2@YBX1!0.13!3.89!YBX1;;chrX:46404811..46404869,-!p1@ZNF674!0.13!3.72!ZNF674;;chr2:217277480..217277505,+!p2@SMARCAL1!0.13!3.38!SMARCAL1;;chr9:137217986..137218049,+!p3@RXRA!0.13!2.70!RXRA;;chr3:44754126..44754171,+!p1@ZNF502!0.13!2.20!ZNF502;;chr4:56413032..56413056,-!p2@CLOCK!0.13!2.20!CLOCK;;
Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
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Line 46: Line 60:
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|sample_cell_line=NCI-H2452
Line 83: Line 100:
|top_motifs=NKX3-1:1.38316600569;IRF7:1.17000636985;NR3C1:1.16536007192;IRF1,2:1.01325343804;EN1,2:0.956108888008;RXR{A,B,G}:0.945097704975;E2F1..5:0.89767782082;CDX1,2,4:0.8842135223;GFI1:0.866802030688;HOX{A5,B5}:0.780647363184;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.732730698646;TEAD1:0.711483764879;ELK1,4_GABP{A,B1}:0.691101825344;NKX2-2,8:0.630358555213;TOPORS:0.602988000535;POU1F1:0.599135580531;STAT5{A,B}:0.581554721966;ADNP_IRX_SIX_ZHX:0.579689201204;ZIC1..3:0.577638020675;NRF1:0.56181123464;NFY{A,B,C}:0.554693966761;TEF:0.548400552532;ZBTB16:0.539923893266;XCPE1{core}:0.53383189284;NFIX:0.515000289394;NKX6-1,2:0.495265492365;LMO2:0.490541375699;PITX1..3:0.462614322373;TLX1..3_NFIC{dimer}:0.442075176455;EVI1:0.441882499904;NFE2L2:0.427432105579;POU5F1:0.3841116251;UFEwm:0.372731223986;AIRE:0.36417729937;HMGA1,2:0.355427374777;NFE2:0.344962048598;YY1:0.344182563988;FOXM1:0.341632653775;HSF1,2:0.317251412236;MYB:0.311480913707;STAT2,4,6:0.299825689904;NR6A1:0.285049573733;GZF1:0.28031002774;BACH2:0.27295084278;ZNF143:0.238706324556;ZNF148:0.236483872131;HOX{A4,D4}:0.214046461326;bHLH_family:0.191663893577;HOXA9_MEIS1:0.190552816333;ZNF384:0.170703484236;GATA4:0.165149937857;CEBPA,B_DDIT3:0.15646119556;HNF4A_NR2F1,2:0.147469570063;GFI1B:0.142686450861;FOS_FOS{B,L1}_JUN{B,D}:0.128032853099;EP300:0.0983862799666;HAND1,2:0.0806672789383;MYOD1:0.078002954327;PAX4:0.0719163414112;ELF1,2,4:0.0690485212632;FOXQ1:0.0679764574093;RFX1:0.0673723878762;HIF1A:0.0652583347119;SOX2:0.0646231299824;ALX4:0.0583725237058;PDX1:0.0557666320378;NFE2L1:0.0521397467149;MAZ:0.0463230865316;NR5A1,2:0.0453034909587;ZBTB6:0.0330587176438;PBX1:0.0136095514798;SREBF1,2:0.0120466486994;ZEB1:0.0107915530892;XBP1:0.00561466507194;CRX:0.00526527371622;SNAI1..3:-0.0181648613872;PAX5:-0.021371355969;GTF2I:-0.0457953164412;LHX3,4:-0.0481271178471;DMAP1_NCOR{1,2}_SMARC:-0.0550993341903;TFDP1:-0.0579140353585;PATZ1:-0.0675665100712;KLF4:-0.0689185604261;RXRA_VDR{dimer}:-0.0725073834946;FOXD3:-0.075196025656;FOXP1:-0.0952634220719;NFATC1..3:-0.10598933538;FOXA2:-0.109773833614;POU3F1..4:-0.118183723232;RREB1:-0.121315238164;OCT4_SOX2{dimer}:-0.129027740548;HLF:-0.142928337026;MZF1:-0.15103639506;PPARG:-0.156545831487;SOX{8,9,10}:-0.160112019196;PAX1,9:-0.161949369242;FOXO1,3,4:-0.179000846596;FOXP3:-0.186674792484;NFKB1_REL_RELA:-0.211039015615;TFAP2B:-0.222759247869;ALX1:-0.224208747563;PRRX1,2:-0.230212158886;NKX3-2:-0.230665352056;HBP1_HMGB_SSRP1_UBTF:-0.231896029859;ONECUT1,2:-0.238440762599;HNF1A:-0.244588011298;IKZF1:-0.245373352832;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.259998797973;HIC1:-0.263197370109;T:-0.277283665482;PAX8:-0.278106918018;ZNF423:-0.280646463935;POU2F1..3:-0.296980148739;GCM1,2:-0.307796399979;FOSL2:-0.326079370854;AHR_ARNT_ARNT2:-0.32873580834;IKZF2:-0.329401974875;TP53:-0.3598806181;NKX2-3_NKX2-5:-0.361719147847;ATF6:-0.366874720339;ARID5B:-0.378298543404;PRDM1:-0.381383275093;FOXL1:-0.383891649539;HES1:-0.384017096277;MTE{core}:-0.388521485072;AR:-0.394038555809;ESRRA:-0.400509647825;GLI1..3:-0.400738989092;TFCP2:-0.410163786907;SP1:-0.41832216335;ETS1,2:-0.422760398962;NANOG:-0.430381293511;PAX6:-0.437657577818;GTF2A1,2:-0.451141524255;SRF:-0.462471259761;SPIB:-0.468082027956;CDC5L:-0.46942184738;HOX{A6,A7,B6,B7}:-0.478031318242;LEF1_TCF7_TCF7L1,2:-0.488576634146;MAFB:-0.491913304242;SPZ1:-0.492133587096;FOX{I1,J2}:-0.492626896362;BREu{core}:-0.498018106126;RFX2..5_RFXANK_RFXAP:-0.502704409566;SPI1:-0.505724339455;SOX17:-0.518006432092;STAT1,3:-0.533862654123;TBP:-0.543550244833;RBPJ:-0.549818759443;NKX2-1,4:-0.560254366906;PAX2:-0.567593619058;GATA6:-0.576356547726;RUNX1..3:-0.577288651867;REST:-0.585866346104;EGR1..3:-0.605708796148;ATF5_CREB3:-0.626291016908;MED-1{core}:-0.62683543848;ZNF238:-0.633345402339;NR1H4:-0.634304321305;PAX3,7:-0.638725664866;TFAP2{A,C}:-0.643538620395;ESR1:-0.663344199872;TAL1_TCF{3,4,12}:-0.698283307496;CREB1:-0.698334842228;SMAD1..7,9:-0.723937382569;MEF2{A,B,C,D}:-0.734787321755;TFAP4:-0.742025439503;MYBL2:-0.743204694569;VSX1,2:-0.751813842915;ZFP161:-0.760295964373;MTF1:-0.761963395204;NHLH1,2:-0.776841756153;FOX{D1,D2}:-0.79860755558;DBP:-0.799611741207;NFIL3:-0.800144583199;MYFfamily:-0.828529992486;TGIF1:-0.829556889486;FOX{F1,F2,J1}:-0.835585368595;TBX4,5:-0.84019581591;CUX2:-0.861403862528;HMX1:-0.875130709888;EBF1:-0.894847436732;BPTF:-0.894956357121;ATF4:-0.905740046608;JUN:-1.00057281122;POU6F1:-1.02474359005;RORA:-1.04622374833;TLX2:-1.04986829179;FOXN1:-1.10804016253;ATF2:-1.19211342966;NANOG{mouse}:-1.29030515927;SOX5:-1.55687774011
|top_motifs=NKX3-1:1.38316600569;IRF7:1.17000636985;NR3C1:1.16536007192;IRF1,2:1.01325343804;EN1,2:0.956108888008;RXR{A,B,G}:0.945097704975;E2F1..5:0.89767782082;CDX1,2,4:0.8842135223;GFI1:0.866802030688;HOX{A5,B5}:0.780647363184;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.732730698646;TEAD1:0.711483764879;ELK1,4_GABP{A,B1}:0.691101825344;NKX2-2,8:0.630358555213;TOPORS:0.602988000535;POU1F1:0.599135580531;STAT5{A,B}:0.581554721966;ADNP_IRX_SIX_ZHX:0.579689201204;ZIC1..3:0.577638020675;NRF1:0.56181123464;NFY{A,B,C}:0.554693966761;TEF:0.548400552532;ZBTB16:0.539923893266;XCPE1{core}:0.53383189284;NFIX:0.515000289394;NKX6-1,2:0.495265492365;LMO2:0.490541375699;PITX1..3:0.462614322373;TLX1..3_NFIC{dimer}:0.442075176455;EVI1:0.441882499904;NFE2L2:0.427432105579;POU5F1:0.3841116251;UFEwm:0.372731223986;AIRE:0.36417729937;HMGA1,2:0.355427374777;NFE2:0.344962048598;YY1:0.344182563988;FOXM1:0.341632653775;HSF1,2:0.317251412236;MYB:0.311480913707;STAT2,4,6:0.299825689904;NR6A1:0.285049573733;GZF1:0.28031002774;BACH2:0.27295084278;ZNF143:0.238706324556;ZNF148:0.236483872131;HOX{A4,D4}:0.214046461326;bHLH_family:0.191663893577;HOXA9_MEIS1:0.190552816333;ZNF384:0.170703484236;GATA4:0.165149937857;CEBPA,B_DDIT3:0.15646119556;HNF4A_NR2F1,2:0.147469570063;GFI1B:0.142686450861;FOS_FOS{B,L1}_JUN{B,D}:0.128032853099;EP300:0.0983862799666;HAND1,2:0.0806672789383;MYOD1:0.078002954327;PAX4:0.0719163414112;ELF1,2,4:0.0690485212632;FOXQ1:0.0679764574093;RFX1:0.0673723878762;HIF1A:0.0652583347119;SOX2:0.0646231299824;ALX4:0.0583725237058;PDX1:0.0557666320378;NFE2L1:0.0521397467149;MAZ:0.0463230865316;NR5A1,2:0.0453034909587;ZBTB6:0.0330587176438;PBX1:0.0136095514798;SREBF1,2:0.0120466486994;ZEB1:0.0107915530892;XBP1:0.00561466507194;CRX:0.00526527371622;SNAI1..3:-0.0181648613872;PAX5:-0.021371355969;GTF2I:-0.0457953164412;LHX3,4:-0.0481271178471;DMAP1_NCOR{1,2}_SMARC:-0.0550993341903;TFDP1:-0.0579140353585;PATZ1:-0.0675665100712;KLF4:-0.0689185604261;RXRA_VDR{dimer}:-0.0725073834946;FOXD3:-0.075196025656;FOXP1:-0.0952634220719;NFATC1..3:-0.10598933538;FOXA2:-0.109773833614;POU3F1..4:-0.118183723232;RREB1:-0.121315238164;OCT4_SOX2{dimer}:-0.129027740548;HLF:-0.142928337026;MZF1:-0.15103639506;PPARG:-0.156545831487;SOX{8,9,10}:-0.160112019196;PAX1,9:-0.161949369242;FOXO1,3,4:-0.179000846596;FOXP3:-0.186674792484;NFKB1_REL_RELA:-0.211039015615;TFAP2B:-0.222759247869;ALX1:-0.224208747563;PRRX1,2:-0.230212158886;NKX3-2:-0.230665352056;HBP1_HMGB_SSRP1_UBTF:-0.231896029859;ONECUT1,2:-0.238440762599;HNF1A:-0.244588011298;IKZF1:-0.245373352832;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.259998797973;HIC1:-0.263197370109;T:-0.277283665482;PAX8:-0.278106918018;ZNF423:-0.280646463935;POU2F1..3:-0.296980148739;GCM1,2:-0.307796399979;FOSL2:-0.326079370854;AHR_ARNT_ARNT2:-0.32873580834;IKZF2:-0.329401974875;TP53:-0.3598806181;NKX2-3_NKX2-5:-0.361719147847;ATF6:-0.366874720339;ARID5B:-0.378298543404;PRDM1:-0.381383275093;FOXL1:-0.383891649539;HES1:-0.384017096277;MTE{core}:-0.388521485072;AR:-0.394038555809;ESRRA:-0.400509647825;GLI1..3:-0.400738989092;TFCP2:-0.410163786907;SP1:-0.41832216335;ETS1,2:-0.422760398962;NANOG:-0.430381293511;PAX6:-0.437657577818;GTF2A1,2:-0.451141524255;SRF:-0.462471259761;SPIB:-0.468082027956;CDC5L:-0.46942184738;HOX{A6,A7,B6,B7}:-0.478031318242;LEF1_TCF7_TCF7L1,2:-0.488576634146;MAFB:-0.491913304242;SPZ1:-0.492133587096;FOX{I1,J2}:-0.492626896362;BREu{core}:-0.498018106126;RFX2..5_RFXANK_RFXAP:-0.502704409566;SPI1:-0.505724339455;SOX17:-0.518006432092;STAT1,3:-0.533862654123;TBP:-0.543550244833;RBPJ:-0.549818759443;NKX2-1,4:-0.560254366906;PAX2:-0.567593619058;GATA6:-0.576356547726;RUNX1..3:-0.577288651867;REST:-0.585866346104;EGR1..3:-0.605708796148;ATF5_CREB3:-0.626291016908;MED-1{core}:-0.62683543848;ZNF238:-0.633345402339;NR1H4:-0.634304321305;PAX3,7:-0.638725664866;TFAP2{A,C}:-0.643538620395;ESR1:-0.663344199872;TAL1_TCF{3,4,12}:-0.698283307496;CREB1:-0.698334842228;SMAD1..7,9:-0.723937382569;MEF2{A,B,C,D}:-0.734787321755;TFAP4:-0.742025439503;MYBL2:-0.743204694569;VSX1,2:-0.751813842915;ZFP161:-0.760295964373;MTF1:-0.761963395204;NHLH1,2:-0.776841756153;FOX{D1,D2}:-0.79860755558;DBP:-0.799611741207;NFIL3:-0.800144583199;MYFfamily:-0.828529992486;TGIF1:-0.829556889486;FOX{F1,F2,J1}:-0.835585368595;TBX4,5:-0.84019581591;CUX2:-0.861403862528;HMX1:-0.875130709888;EBF1:-0.894847436732;BPTF:-0.894956357121;ATF4:-0.905740046608;JUN:-1.00057281122;POU6F1:-1.02474359005;RORA:-1.04622374833;TLX2:-1.04986829179;FOXN1:-1.10804016253;ATF2:-1.19211342966;NANOG{mouse}:-1.29030515927;SOX5:-1.55687774011
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10848-111F2;search_select_hide=table117:FF:10848-111F2
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:mesothelioma cell line:NCI-H2452
Species:Human (Homo sapiens)
Library ID:CNhs13064
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
ageunknown
cell typemesothelial cell
cell lineNCI-H2452
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005921
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13064 CAGE DRX007948 DRR008820
Accession ID Hg19

Library idBAMCTSS
CNhs13064 DRZ000245 DRZ001630
Accession ID Hg38

Library idBAMCTSS
CNhs13064 DRZ011595 DRZ012980
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.146
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.433
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0939
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0148
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0258
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.132
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0397
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.353
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0678
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.428
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.224
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.334
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.176
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13064

Jaspar motifP-value
MA0002.20.0106
MA0003.10.736
MA0004.10.202
MA0006.10.317
MA0007.10.485
MA0009.10.4
MA0014.10.331
MA0017.10.743
MA0018.22.81789e-5
MA0019.10.466
MA0024.14.6241e-5
MA0025.10.0541
MA0027.10.529
MA0028.16.83421e-5
MA0029.10.935
MA0030.10.00946
MA0031.17.3226e-4
MA0035.20.505
MA0038.10.364
MA0039.20.463
MA0040.10.413
MA0041.10.552
MA0042.10.182
MA0043.11.28896e-4
MA0046.10.0116
MA0047.20.00923
MA0048.10.0488
MA0050.11.07474e-20
MA0051.11.56099e-17
MA0052.10.00219
MA0055.18.17818e-6
MA0057.10.911
MA0058.10.0561
MA0059.10.146
MA0060.19.23243e-4
MA0061.10.706
MA0062.22.44826e-4
MA0065.20.0899
MA0066.10.975
MA0067.10.0281
MA0068.10.00884
MA0069.10.964
MA0070.10.796
MA0071.10.703
MA0072.10.0316
MA0073.10.912
MA0074.10.282
MA0076.18.75121e-5
MA0077.10.029
MA0078.10.145
MA0079.20.0729
MA0080.24.44031e-8
MA0081.10.179
MA0083.10.00217
MA0084.10.672
MA0087.10.318
MA0088.10.0182
MA0090.10.00413
MA0091.10.0973
MA0092.10.504
MA0093.10.12
MA0099.28.78258e-4
MA0100.10.807
MA0101.10.829
MA0102.20.0712
MA0103.10.0435
MA0104.20.0739
MA0105.10.153
MA0106.10.772
MA0107.10.752
MA0108.20.00318
MA0111.10.696
MA0112.20.441
MA0113.10.912
MA0114.10.0757
MA0115.10.00365
MA0116.10.251
MA0117.10.476
MA0119.10.072
MA0122.10.863
MA0124.10.271
MA0125.10.95
MA0131.10.804
MA0135.10.00456
MA0136.10.00153
MA0137.20.878
MA0138.20.151
MA0139.10.617
MA0140.10.389
MA0141.10.581
MA0142.10.805
MA0143.10.666
MA0144.10.749
MA0145.10.836
MA0146.10.0162
MA0147.10.0417
MA0148.10.0513
MA0149.10.174
MA0150.10.00472
MA0152.10.361
MA0153.10.285
MA0154.10.485
MA0155.10.428
MA0156.10.939
MA0157.10.00813
MA0159.10.064
MA0160.10.258
MA0162.10.201
MA0163.10.516
MA0164.10.265
MA0258.10.392
MA0259.10.5



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13064

Novel motifP-value
10.00744
100.115
1000.192
1010.54
1020.793
1030.418
1040.467
1050.466
1060.0102
1070.147
1080.509
1090.137
110.507
1100.0328
1110.708
1120.266
1130.0302
1140.527
1150.745
1160.998
1170.0218
1180.102
1190.792
120.453
1200.453
1210.181
1220.75
1230.752
1240.121
1250.783
1260.714
1270.93
1280.00832
1290.34
136.04063e-4
1300.641
1310.606
1320.681
1330.157
1340.054
1350.0236
1360.0375
1370.394
1380.843
1390.0841
140.736
1400.93
1410.526
1420.109
1430.0558
1440.753
1450.646
1460.858
1470.136
1480.705
1490.296
150.179
1500.403
1510.925
1520.515
1530.223
1540.319
1550.234
1560.912
1570.708
1580.187
1590.685
160.921
1600.446
1610.387
1620.878
1630.581
1640.0138
1650.354
1660.669
1670.58
1680.0248
1690.055
170.585
180.361
190.762
20.898
200.364
210.366
220.339
230.0661
240.251
250.352
260.21
270.866
280.496
298.46049e-4
30.249
300.307
310.105
320.162
330.172
340.184
350.674
360.3
370.595
380.811
390.309
40.249
400.058
410.0272
420.469
430.803
440.85
450.513
460.884
470.125
480.0625
490.321
50.26
500.742
510.825
520.298
530.76
540.477
550.712
560.308
570.34
580.357
590.907
60.566
600.18
610.211
620.168
630.533
640.414
650.242
660.0324
670.446
680.531
690.423
70.827
700.718
710.00154
720.523
730.52
740.477
750.00441
760.314
770.206
780.275
790.449
80.421
800.0875
810.564
820.748
830.973
840.651
850.0407
860.301
870.0481
880.765
890.894
90.429
900.552
910.612
920.0413
930.873
940.393
950.541
960.982
970.893
980.999
990.0831



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13064


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0102424 (mesothelioma cell line sample)
0103764 (NCI cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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