Personal tools

FF:11231-116C7: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005408
|DRA_sample_Accession=CAGE@SAMD00005408
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005408
|accession_numbers=CAGE;DRX008401;DRR009273;DRZ000698;DRZ002083;DRZ012048;DRZ013433
|accession_numbers=CAGE;DRX008401;DRR009273;DRZ000698;DRZ002083;DRZ012048;DRZ013433
|accession_numbers_RNASeq=sRNA-Seq;DRX037024;DRR041390;DRZ007032
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000178,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000178,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000226,CL:0000080,CL:0000842
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000226,CL:0000080,CL:0000842
Line 80: Line 82:
|rna_tube_id=116C7
|rna_tube_id=116C7
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.CCGTCC
|sample_age=47
|sample_age=47
|sample_category=primary cells
|sample_category=primary cells
Line 103: Line 106:
|top_motifs=RUNX1..3:2.89148452218;ETS1,2:2.79949721398;PAX3,7:2.68338017176;FOXO1,3,4:2.44970482561;DMAP1_NCOR{1,2}_SMARC:2.4251704124;SPIB:2.36232536329;ELF1,2,4:2.32376066726;SPI1:2.31839869863;RORA:2.13302212782;FOX{D1,D2}:2.11075058218;ATF5_CREB3:2.080630817;PAX2:2.07562712027;CREB1:1.84110710093;FOXN1:1.81981076555;TGIF1:1.79898868722;NFIL3:1.66016283451;BPTF:1.65072520851;ATF4:1.61691392672;HMX1:1.61610127249;IRF1,2:1.56904589594;TLX2:1.56345994376;MAFB:1.52831330843;T:1.50140117616;NFKB1_REL_RELA:1.43787940179;EP300:1.402037568;FOX{F1,F2,J1}:1.36238857769;CDX1,2,4:1.32645306267;HIF1A:1.25729283587;CEBPA,B_DDIT3:1.20125572794;RFX2..5_RFXANK_RFXAP:1.17265267749;PITX1..3:1.15782606979;NANOG{mouse}:1.15518009476;IRF7:1.10399135124;HMGA1,2:1.0344710689;HOXA9_MEIS1:0.94614380415;JUN:0.931221802792;SREBF1,2:0.916189788138;FOXP1:0.911381275685;IKZF2:0.894415296146;RXRA_VDR{dimer}:0.863932225327;ATF2:0.861210925967;SMAD1..7,9:0.828647715354;NFATC1..3:0.808594972933;BREu{core}:0.769299317911;FOSL2:0.755521190347;HBP1_HMGB_SSRP1_UBTF:0.650052836582;FOXP3:0.578475053957;NKX2-1,4:0.556897421089;PAX6:0.540583288751;FOXA2:0.517981718176;ZBTB16:0.455406493043;GATA6:0.442764967928;BACH2:0.437197949769;HLF:0.432497927317;FOS_FOS{B,L1}_JUN{B,D}:0.416103598292;NFE2:0.387199869465;SOX2:0.37782130148;MYFfamily:0.286084353701;STAT2,4,6:0.265189365078;POU2F1..3:0.255790377641;ATF6:0.254619426988;EGR1..3:0.244910337439;POU5F1:0.234376737874;FOXD3:0.225572270598;MYB:0.215012330139;TBX4,5:0.186811731474;FOX{I1,J2}:0.150107989019;NFE2L2:0.136750817078;RREB1:0.133702653023;GLI1..3:0.105671715118;NANOG:0.101096348861;PDX1:0.0733251409235;TFAP4:0.0636045343681;ZEB1:0.00732428009426;NFE2L1:-0.00817392520212;TOPORS:-0.015507152142;STAT5{A,B}:-0.079286188163;LEF1_TCF7_TCF7L1,2:-0.0796570747662;MYOD1:-0.100325265111;AHR_ARNT_ARNT2:-0.108497708379;SPZ1:-0.140445104252;ESR1:-0.165802663625;MTE{core}:-0.205988189666;PAX4:-0.233070228651;NHLH1,2:-0.2355861267;SNAI1..3:-0.247447849251;MEF2{A,B,C,D}:-0.250873228609;MZF1:-0.26153726085;AIRE:-0.281177211244;ALX1:-0.305225741668;STAT1,3:-0.309086690409;ZFP161:-0.321714564112;NFIX:-0.330406733395;PAX5:-0.332244838415;GATA4:-0.346371669125;GCM1,2:-0.353903362872;NKX3-1:-0.360173654677;NKX2-2,8:-0.386756926392;HES1:-0.408956816402;NKX6-1,2:-0.418160339934;XBP1:-0.425702082059;SP1:-0.439339776902;CUX2:-0.452877016876;MED-1{core}:-0.455562677749;SRF:-0.463651719604;HNF4A_NR2F1,2:-0.469158017634;TAL1_TCF{3,4,12}:-0.471861581023;RBPJ:-0.477793733112;PATZ1:-0.482382101739;EVI1:-0.523007589048;ALX4:-0.523010002011;CRX:-0.523184513432;NR5A1,2:-0.527328199402;PRDM1:-0.528384989683;ELK1,4_GABP{A,B1}:-0.533243314592;ZNF148:-0.537627082435;DBP:-0.545900542048;OCT4_SOX2{dimer}:-0.565281010613;TFCP2:-0.578737326096;NR1H4:-0.586565318982;RFX1:-0.58778598405;PRRX1,2:-0.627834871571;ADNP_IRX_SIX_ZHX:-0.633628180694;MTF1:-0.642976896153;E2F1..5:-0.656923800506;FOXL1:-0.671665366756;SOX{8,9,10}:-0.678395267158;HNF1A:-0.681271211851;LMO2:-0.703432540019;SOX5:-0.715734504685;NRF1:-0.722331551315;PAX8:-0.72985668598;REST:-0.738394558786;TFDP1:-0.760570769346;NFY{A,B,C}:-0.760800938069;VSX1,2:-0.771428287954;TFAP2B:-0.785409288022;PBX1:-0.789190265909;ZNF238:-0.802702792647;AR:-0.863700946917;TFAP2{A,C}:-0.909618893424;ZNF384:-0.919069465799;ZNF423:-0.924719635119;MAZ:-0.944978995889;ESRRA:-0.951926052683;HOX{A6,A7,B6,B7}:-1.01066070193;HIC1:-1.02678925069;XCPE1{core}:-1.0268816972;FOXM1:-1.03087703837;POU1F1:-1.06777263588;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07639939971;FOXQ1:-1.12269207697;NR3C1:-1.12867027343;ZBTB6:-1.13357493074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.16022686625;HSF1,2:-1.16896445336;EN1,2:-1.17051022502;NR6A1:-1.20226547647;ZNF143:-1.23010594512;RXR{A,B,G}:-1.24050171012;NKX2-3_NKX2-5:-1.24503402775;YY1:-1.29056258044;KLF4:-1.32746142836;PPARG:-1.33191748222;CDC5L:-1.36383203755;bHLH_family:-1.39574895513;GTF2I:-1.40070633871;TBP:-1.42278910778;GFI1:-1.47112053064;GZF1:-1.50699948752;NKX3-2:-1.51151676493;TEF:-1.51499230149;TP53:-1.53005079661;ZIC1..3:-1.5338037283;TLX1..3_NFIC{dimer}:-1.53574367127;SOX17:-1.55300068416;GFI1B:-1.57406152105;HAND1,2:-1.61962445991;TEAD1:-1.63295342186;MYBL2:-1.68198576212;LHX3,4:-1.69131942309;POU6F1:-1.75082196742;GTF2A1,2:-1.75217243382;EBF1:-1.75908013574;HOX{A5,B5}:-1.76091655595;ARID5B:-1.84278779079;POU3F1..4:-1.88894039345;UFEwm:-1.95611358594;PAX1,9:-2.07479632185;ONECUT1,2:-2.1704735322;HOX{A4,D4}:-2.28230198536;IKZF1:-2.81397692667
|top_motifs=RUNX1..3:2.89148452218;ETS1,2:2.79949721398;PAX3,7:2.68338017176;FOXO1,3,4:2.44970482561;DMAP1_NCOR{1,2}_SMARC:2.4251704124;SPIB:2.36232536329;ELF1,2,4:2.32376066726;SPI1:2.31839869863;RORA:2.13302212782;FOX{D1,D2}:2.11075058218;ATF5_CREB3:2.080630817;PAX2:2.07562712027;CREB1:1.84110710093;FOXN1:1.81981076555;TGIF1:1.79898868722;NFIL3:1.66016283451;BPTF:1.65072520851;ATF4:1.61691392672;HMX1:1.61610127249;IRF1,2:1.56904589594;TLX2:1.56345994376;MAFB:1.52831330843;T:1.50140117616;NFKB1_REL_RELA:1.43787940179;EP300:1.402037568;FOX{F1,F2,J1}:1.36238857769;CDX1,2,4:1.32645306267;HIF1A:1.25729283587;CEBPA,B_DDIT3:1.20125572794;RFX2..5_RFXANK_RFXAP:1.17265267749;PITX1..3:1.15782606979;NANOG{mouse}:1.15518009476;IRF7:1.10399135124;HMGA1,2:1.0344710689;HOXA9_MEIS1:0.94614380415;JUN:0.931221802792;SREBF1,2:0.916189788138;FOXP1:0.911381275685;IKZF2:0.894415296146;RXRA_VDR{dimer}:0.863932225327;ATF2:0.861210925967;SMAD1..7,9:0.828647715354;NFATC1..3:0.808594972933;BREu{core}:0.769299317911;FOSL2:0.755521190347;HBP1_HMGB_SSRP1_UBTF:0.650052836582;FOXP3:0.578475053957;NKX2-1,4:0.556897421089;PAX6:0.540583288751;FOXA2:0.517981718176;ZBTB16:0.455406493043;GATA6:0.442764967928;BACH2:0.437197949769;HLF:0.432497927317;FOS_FOS{B,L1}_JUN{B,D}:0.416103598292;NFE2:0.387199869465;SOX2:0.37782130148;MYFfamily:0.286084353701;STAT2,4,6:0.265189365078;POU2F1..3:0.255790377641;ATF6:0.254619426988;EGR1..3:0.244910337439;POU5F1:0.234376737874;FOXD3:0.225572270598;MYB:0.215012330139;TBX4,5:0.186811731474;FOX{I1,J2}:0.150107989019;NFE2L2:0.136750817078;RREB1:0.133702653023;GLI1..3:0.105671715118;NANOG:0.101096348861;PDX1:0.0733251409235;TFAP4:0.0636045343681;ZEB1:0.00732428009426;NFE2L1:-0.00817392520212;TOPORS:-0.015507152142;STAT5{A,B}:-0.079286188163;LEF1_TCF7_TCF7L1,2:-0.0796570747662;MYOD1:-0.100325265111;AHR_ARNT_ARNT2:-0.108497708379;SPZ1:-0.140445104252;ESR1:-0.165802663625;MTE{core}:-0.205988189666;PAX4:-0.233070228651;NHLH1,2:-0.2355861267;SNAI1..3:-0.247447849251;MEF2{A,B,C,D}:-0.250873228609;MZF1:-0.26153726085;AIRE:-0.281177211244;ALX1:-0.305225741668;STAT1,3:-0.309086690409;ZFP161:-0.321714564112;NFIX:-0.330406733395;PAX5:-0.332244838415;GATA4:-0.346371669125;GCM1,2:-0.353903362872;NKX3-1:-0.360173654677;NKX2-2,8:-0.386756926392;HES1:-0.408956816402;NKX6-1,2:-0.418160339934;XBP1:-0.425702082059;SP1:-0.439339776902;CUX2:-0.452877016876;MED-1{core}:-0.455562677749;SRF:-0.463651719604;HNF4A_NR2F1,2:-0.469158017634;TAL1_TCF{3,4,12}:-0.471861581023;RBPJ:-0.477793733112;PATZ1:-0.482382101739;EVI1:-0.523007589048;ALX4:-0.523010002011;CRX:-0.523184513432;NR5A1,2:-0.527328199402;PRDM1:-0.528384989683;ELK1,4_GABP{A,B1}:-0.533243314592;ZNF148:-0.537627082435;DBP:-0.545900542048;OCT4_SOX2{dimer}:-0.565281010613;TFCP2:-0.578737326096;NR1H4:-0.586565318982;RFX1:-0.58778598405;PRRX1,2:-0.627834871571;ADNP_IRX_SIX_ZHX:-0.633628180694;MTF1:-0.642976896153;E2F1..5:-0.656923800506;FOXL1:-0.671665366756;SOX{8,9,10}:-0.678395267158;HNF1A:-0.681271211851;LMO2:-0.703432540019;SOX5:-0.715734504685;NRF1:-0.722331551315;PAX8:-0.72985668598;REST:-0.738394558786;TFDP1:-0.760570769346;NFY{A,B,C}:-0.760800938069;VSX1,2:-0.771428287954;TFAP2B:-0.785409288022;PBX1:-0.789190265909;ZNF238:-0.802702792647;AR:-0.863700946917;TFAP2{A,C}:-0.909618893424;ZNF384:-0.919069465799;ZNF423:-0.924719635119;MAZ:-0.944978995889;ESRRA:-0.951926052683;HOX{A6,A7,B6,B7}:-1.01066070193;HIC1:-1.02678925069;XCPE1{core}:-1.0268816972;FOXM1:-1.03087703837;POU1F1:-1.06777263588;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07639939971;FOXQ1:-1.12269207697;NR3C1:-1.12867027343;ZBTB6:-1.13357493074;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.16022686625;HSF1,2:-1.16896445336;EN1,2:-1.17051022502;NR6A1:-1.20226547647;ZNF143:-1.23010594512;RXR{A,B,G}:-1.24050171012;NKX2-3_NKX2-5:-1.24503402775;YY1:-1.29056258044;KLF4:-1.32746142836;PPARG:-1.33191748222;CDC5L:-1.36383203755;bHLH_family:-1.39574895513;GTF2I:-1.40070633871;TBP:-1.42278910778;GFI1:-1.47112053064;GZF1:-1.50699948752;NKX3-2:-1.51151676493;TEF:-1.51499230149;TP53:-1.53005079661;ZIC1..3:-1.5338037283;TLX1..3_NFIC{dimer}:-1.53574367127;SOX17:-1.55300068416;GFI1B:-1.57406152105;HAND1,2:-1.61962445991;TEAD1:-1.63295342186;MYBL2:-1.68198576212;LHX3,4:-1.69131942309;POU6F1:-1.75082196742;GTF2A1,2:-1.75217243382;EBF1:-1.75908013574;HOX{A5,B5}:-1.76091655595;ARID5B:-1.84278779079;POU3F1..4:-1.88894039345;UFEwm:-1.95611358594;PAX1,9:-2.07479632185;ONECUT1,2:-2.1704735322;HOX{A4,D4}:-2.28230198536;IKZF1:-2.81397692667
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11231-116C7;search_select_hide=table117:FF:11231-116C7
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:Peripheral Blood Mononuclear Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10860
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage47 years old adult
sexmale
age47
cell typemononuclear cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberPBMC721
catalog number3H100-10-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005408
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10860 CAGE DRX008401 DRR009273
Accession ID Hg19

Library idBAMCTSS
CNhs10860 DRZ000698 DRZ002083
Accession ID Hg38

Library idBAMCTSS
CNhs10860 DRZ012048 DRZ013433
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005408
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.CCGTCC sRNA-Seq DRX037024 DRR041390
Accession ID Hg19

Library idBAMCTSS
SRhi10003.CCGTCC DRZ007032


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.21
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.159
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0816
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.25
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.308
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.35
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.119
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.15
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.308
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.308
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40.0816
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.0816
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.572
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.522
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.15
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.567
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.116
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.262
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.21
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.21
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0736
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.308
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.262
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.262
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.119
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.342
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.21
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.341
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.714
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.35
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.457
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.398
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0816
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.515
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.262
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.451
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.604
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.337
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.262
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.674
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.542
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.515
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.116
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.424
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0.0816
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.21
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.826
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.15
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0816
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.262
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.15
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.21
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.21
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.424
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10860

Jaspar motifP-value
MA0002.22.28745e-10
MA0003.10.859
MA0004.10.952
MA0006.10.337
MA0007.10.432
MA0009.10.0191
MA0014.10.785
MA0017.10.874
MA0018.24.1566e-4
MA0019.10.418
MA0024.10.0498
MA0025.10.00525
MA0027.10.994
MA0028.10.775
MA0029.10.368
MA0030.10.0182
MA0031.10.00332
MA0035.20.98
MA0038.10.242
MA0039.20.742
MA0040.10.568
MA0041.10.414
MA0042.10.92
MA0043.15.03907e-7
MA0046.10.0763
MA0047.20.541
MA0048.10.194
MA0050.11.92324e-8
MA0051.10.00341
MA0052.10.795
MA0055.10.0327
MA0057.10.388
MA0058.10.942
MA0059.10.444
MA0060.12.45221e-4
MA0061.12.4972e-11
MA0062.23.17287e-8
MA0065.20.833
MA0066.10.205
MA0067.14.86575e-4
MA0068.10.688
MA0069.10.43
MA0070.10.0942
MA0071.10.559
MA0072.10.17
MA0073.10.501
MA0074.10.986
MA0076.10.343
MA0077.10.0768
MA0078.10.676
MA0079.20.994
MA0080.22.62743e-16
MA0081.13.38648e-4
MA0083.10.109
MA0084.10.889
MA0087.10.988
MA0088.10.295
MA0090.10.00145
MA0091.10.604
MA0092.10.938
MA0093.10.793
MA0099.22.81434e-5
MA0100.10.935
MA0101.16.84751e-6
MA0102.24.03533e-8
MA0103.10.547
MA0104.20.691
MA0105.11.9261e-8
MA0106.10.0206
MA0107.19.48304e-7
MA0108.21.17482e-4
MA0111.10.354
MA0112.20.359
MA0113.10.447
MA0114.10.509
MA0115.10.138
MA0116.10.0016
MA0117.10.00999
MA0119.10.593
MA0122.10.831
MA0124.10.7
MA0125.10.114
MA0131.10.834
MA0135.10.657
MA0136.17.68459e-22
MA0137.20.944
MA0138.20.142
MA0139.10.984
MA0140.10.584
MA0141.10.612
MA0142.10.374
MA0143.10.437
MA0144.10.57
MA0145.10.49
MA0146.10.371
MA0147.10.836
MA0148.10.782
MA0149.10.721
MA0150.17.92109e-5
MA0152.10.0246
MA0153.10.0126
MA0154.10.0167
MA0155.10.601
MA0156.19.74992e-20
MA0157.10.0146
MA0159.10.195
MA0160.10.507
MA0162.10.209
MA0163.12.23748e-4
MA0164.10.981
MA0258.10.196
MA0259.10.74



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10860

Novel motifP-value
10.443
100.0148
1000.443
1010.428
1020.711
1030.6
1040.592
1050.167
1060.00995
1070.558
1080.475
1090.423
110.378
1100.884
1110.14
1120.613
1130.0422
1140.205
1150.152
1160.321
1170.0177
1180.326
1190.974
120.399
1200.322
1210.472
1220.359
1230.00346
1240.364
1250.796
1260.206
1270.413
1280.234
1290.752
130.693
1300.244
1310.683
1320.108
1330.474
1340.879
1350.31
1360.635
1375.08791e-4
1380.113
1390.0118
140.28
1400.424
1410.511
1420.941
1430.00588
1440.75
1450.986
1460.816
1470.0353
1480.195
1490.647
150.116
1500.907
1510.216
1520.955
1530.706
1540.291
1550.0682
1560.561
1570.899
1580.00548
1590.754
160.859
1600.479
1610.78
1620.0556
1630.776
1640.252
1650.229
1660.613
1670.453
1680.154
1690.952
170.765
180.566
190.399
20.846
200.748
210.75
220.948
230.211
240.432
250.0972
260.643
270.556
280.359
290.233
30.32
300.227
310.997
320.0196
330.454
340.886
350.153
360.208
370.359
380.675
390.662
40.804
400.871
410.034
420.278
430.117
440.593
450.739
460.451
470.679
480.646
490.107
50.211
500.656
510.541
520.757
530.103
540.627
550.824
560.849
570.94
580.0493
590.962
60.845
600.138
610.133
620.033
630.945
640.516
650.569
660.214
670.818
680.329
690.734
70.333
700.0782
710.0982
720.232
730.671
740.159
750.0836
760.119
770.169
780.341
790.857
80.662
800.0102
810.436
820.223
830.913
840.252
850.181
860.0469
870.812
880.604
890.215
90.447
900.0291
910.431
920.288
930.572
940.122
950.37
960.86
970.733
980.302
993.62659e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10860


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000226 (single nucleate cell)
0000080 (circulating cell)
0000842 (mononuclear cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000178 (blood)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000135 (human peripheral blood mononuclear cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11231-116C7&oldid=4576288"