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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004887
|DRA_sample_Accession=CAGE@SAMD00004887
|accession_numbers=CAGE;DRX008367;DRR009239;DRZ000664;DRZ002049
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004887
|accession_numbers=CAGE;DRX008367;DRR009239;DRZ000664;DRZ002049;DRZ012014;DRZ013399
|accession_numbers_RNASeq=sRNA-Seq;DRX037139;DRR041505;DRZ007147
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=NKX3-1:2.34658123597;FOXL1:1.6833986254;NR3C1:1.65381771102;HMGA1,2:1.45161867784;NKX2-2,8:1.35919552312;EVI1:1.27688861522;HIF1A:1.27185581117;AIRE:1.20648741474;XBP1:1.19991772302;POU3F1..4:1.1922834914;ALX4:1.18143578341;HBP1_HMGB_SSRP1_UBTF:1.16018540484;HSF1,2:1.13642962784;GZF1:1.12007405792;IKZF1:1.10383719303;ZNF238:1.09145631516;TAL1_TCF{3,4,12}:1.08062201792;TEAD1:1.07356348367;SRF:1.05406855792;UFEwm:1.00255782903;HOX{A5,B5}:0.912053929674;TBX4,5:0.909598634328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.902220834589;MAFB:0.881638840257;TBP:0.875198143426;MYBL2:0.833430369202;EBF1:0.77473812988;ELK1,4_GABP{A,B1}:0.751564990856;HES1:0.715679300578;GFI1B:0.71417476744;EN1,2:0.685618215115;NANOG{mouse}:0.679841024261;HMX1:0.678010830463;TFCP2:0.664481385814;TFAP4:0.637719477259;PPARG:0.637616588401;KLF4:0.609737836564;ONECUT1,2:0.593695991353;PAX1,9:0.584742994494;NFE2L1:0.579121026488;ATF6:0.555517517192;MTE{core}:0.545823517364;AR:0.51433161236;LHX3,4:0.507427118644;POU1F1:0.503389288659;PAX4:0.494576952125;TLX1..3_NFIC{dimer}:0.492338785601;RXR{A,B,G}:0.491118127712;NRF1:0.490318076068;ZBTB16:0.485981452808;ESR1:0.483902769886;TP53:0.475835054696;TGIF1:0.471430163487;GTF2A1,2:0.470960752885;NHLH1,2:0.470059075113;MEF2{A,B,C,D}:0.46860301019;STAT5{A,B}:0.460986086711;NKX2-1,4:0.460506903618;NFATC1..3:0.449306382816;GCM1,2:0.44926016843;NFE2L2:0.448793985203;bHLH_family:0.448575120858;HOX{A6,A7,B6,B7}:0.446113826648;ARID5B:0.436525496017;TEF:0.423854716523;POU6F1:0.416505456338;ZNF384:0.415070121405;YY1:0.409360723978;PAX5:0.394416196522;ALX1:0.372021216248;HOX{A4,D4}:0.356509368024;T:0.330492718456;GLI1..3:0.304600611187;ZNF143:0.302232964242;RXRA_VDR{dimer}:0.299843849984;PRRX1,2:0.2729665233;NFIX:0.271822743719;MYOD1:0.270931189815;HAND1,2:0.255169127631;LEF1_TCF7_TCF7L1,2:0.247954998677;BACH2:0.205335644345;NKX3-2:0.175614100781;ESRRA:0.166507007643;FOS_FOS{B,L1}_JUN{B,D}:0.163527532853;MAZ:0.156025926823;SOX17:0.137796667862;GATA4:0.13110579294;CDX1,2,4:0.126203050632;HLF:0.104078911638;PAX8:0.0966472089743;MZF1:0.0904491138898;HIC1:0.0888988670198;MTF1:0.0864717141631;ZBTB6:0.0801400798912;CDC5L:0.0645576336942;GFI1:0.0609942949394;DBP:0.0465034633073;SREBF1,2:0.0410891683709;PDX1:0.0117684206439;XCPE1{core}:0.000113813233304;NFE2:-0.00784210330666;DMAP1_NCOR{1,2}_SMARC:-0.0179311954648;SOX5:-0.0209463811732;PAX2:-0.0407712149958;NFIL3:-0.0460277623231;TFAP2B:-0.0480178412032;HNF1A:-0.0510912610307;ADNP_IRX_SIX_ZHX:-0.0641106287564;CEBPA,B_DDIT3:-0.0724841813159;NR5A1,2:-0.0785739637309;ELF1,2,4:-0.0813315804332;GTF2I:-0.082191673157;NR6A1:-0.0945782037454;SPZ1:-0.10081061831;FOSL2:-0.108029965003;ZNF148:-0.109377761607;AHR_ARNT_ARNT2:-0.116620922696;TLX2:-0.118695543047;SMAD1..7,9:-0.120104118389;FOXP3:-0.1278594665;IRF1,2:-0.141968625014;TFDP1:-0.143725605446;FOXM1:-0.158251786413;TFAP2{A,C}:-0.161111398116;E2F1..5:-0.168275476568;IRF7:-0.169797510588;STAT2,4,6:-0.175131474906;FOXO1,3,4:-0.176413162972;ZFP161:-0.184284093453;SP1:-0.195375374417;MYFfamily:-0.197573799541;PRDM1:-0.208230847965;ZIC1..3:-0.210377553575;RUNX1..3:-0.217972522253;LMO2:-0.218120307472;NR1H4:-0.220241676095;MYB:-0.247425611318;CREB1:-0.279184878095;JUN:-0.280070648808;HNF4A_NR2F1,2:-0.283256212195;FOXN1:-0.30366889179;REST:-0.34123182631;EGR1..3:-0.34711932738;STAT1,3:-0.368730678347;RREB1:-0.372657444644;RFX1:-0.377678200184;PAX6:-0.380084411356;SPI1:-0.39006940556;NFY{A,B,C}:-0.396774329093;IKZF2:-0.40073177307;FOXD3:-0.431227961794;FOXA2:-0.438290141241;FOX{I1,J2}:-0.438590036869;NFKB1_REL_RELA:-0.45712004977;TOPORS:-0.474578187598;PATZ1:-0.475557912675;ETS1,2:-0.486122296612;FOXP1:-0.535037171277;MED-1{core}:-0.536266984882;EP300:-0.549712157808;CRX:-0.568320073709;PITX1..3:-0.583209143162;VSX1,2:-0.583753021378;ZNF423:-0.5901876991;PAX3,7:-0.603744722066;OCT4_SOX2{dimer}:-0.623760231665;SPIB:-0.626315816937;NKX2-3_NKX2-5:-0.626544055357;HOXA9_MEIS1:-0.636004855346;SOX{8,9,10}:-0.687233211121;ATF5_CREB3:-0.688507774512;SNAI1..3:-0.702454677501;RFX2..5_RFXANK_RFXAP:-0.709254531963;NKX6-1,2:-0.718955539992;SOX2:-0.731060675152;BPTF:-0.745728445036;FOX{D1,D2}:-0.765925002381;ATF2:-0.785716610509;ATF4:-0.827636997692;GATA6:-0.836683293753;POU5F1:-0.840045043575;RBPJ:-0.841060682726;CUX2:-0.875454479801;NANOG:-0.917141630032;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.943286262595;BREu{core}:-1.08358530122;POU2F1..3:-1.08688585015;ZEB1:-1.12743331185;FOXQ1:-1.18019171829;FOX{F1,F2,J1}:-1.18481569425;RORA:-1.25503520778;PBX1:-1.32619921356
|top_motifs=NKX3-1:2.34658123597;FOXL1:1.6833986254;NR3C1:1.65381771102;HMGA1,2:1.45161867784;NKX2-2,8:1.35919552312;EVI1:1.27688861522;HIF1A:1.27185581117;AIRE:1.20648741474;XBP1:1.19991772302;POU3F1..4:1.1922834914;ALX4:1.18143578341;HBP1_HMGB_SSRP1_UBTF:1.16018540484;HSF1,2:1.13642962784;GZF1:1.12007405792;IKZF1:1.10383719303;ZNF238:1.09145631516;TAL1_TCF{3,4,12}:1.08062201792;TEAD1:1.07356348367;SRF:1.05406855792;UFEwm:1.00255782903;HOX{A5,B5}:0.912053929674;TBX4,5:0.909598634328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.902220834589;MAFB:0.881638840257;TBP:0.875198143426;MYBL2:0.833430369202;EBF1:0.77473812988;ELK1,4_GABP{A,B1}:0.751564990856;HES1:0.715679300578;GFI1B:0.71417476744;EN1,2:0.685618215115;NANOG{mouse}:0.679841024261;HMX1:0.678010830463;TFCP2:0.664481385814;TFAP4:0.637719477259;PPARG:0.637616588401;KLF4:0.609737836564;ONECUT1,2:0.593695991353;PAX1,9:0.584742994494;NFE2L1:0.579121026488;ATF6:0.555517517192;MTE{core}:0.545823517364;AR:0.51433161236;LHX3,4:0.507427118644;POU1F1:0.503389288659;PAX4:0.494576952125;TLX1..3_NFIC{dimer}:0.492338785601;RXR{A,B,G}:0.491118127712;NRF1:0.490318076068;ZBTB16:0.485981452808;ESR1:0.483902769886;TP53:0.475835054696;TGIF1:0.471430163487;GTF2A1,2:0.470960752885;NHLH1,2:0.470059075113;MEF2{A,B,C,D}:0.46860301019;STAT5{A,B}:0.460986086711;NKX2-1,4:0.460506903618;NFATC1..3:0.449306382816;GCM1,2:0.44926016843;NFE2L2:0.448793985203;bHLH_family:0.448575120858;HOX{A6,A7,B6,B7}:0.446113826648;ARID5B:0.436525496017;TEF:0.423854716523;POU6F1:0.416505456338;ZNF384:0.415070121405;YY1:0.409360723978;PAX5:0.394416196522;ALX1:0.372021216248;HOX{A4,D4}:0.356509368024;T:0.330492718456;GLI1..3:0.304600611187;ZNF143:0.302232964242;RXRA_VDR{dimer}:0.299843849984;PRRX1,2:0.2729665233;NFIX:0.271822743719;MYOD1:0.270931189815;HAND1,2:0.255169127631;LEF1_TCF7_TCF7L1,2:0.247954998677;BACH2:0.205335644345;NKX3-2:0.175614100781;ESRRA:0.166507007643;FOS_FOS{B,L1}_JUN{B,D}:0.163527532853;MAZ:0.156025926823;SOX17:0.137796667862;GATA4:0.13110579294;CDX1,2,4:0.126203050632;HLF:0.104078911638;PAX8:0.0966472089743;MZF1:0.0904491138898;HIC1:0.0888988670198;MTF1:0.0864717141631;ZBTB6:0.0801400798912;CDC5L:0.0645576336942;GFI1:0.0609942949394;DBP:0.0465034633073;SREBF1,2:0.0410891683709;PDX1:0.0117684206439;XCPE1{core}:0.000113813233304;NFE2:-0.00784210330666;DMAP1_NCOR{1,2}_SMARC:-0.0179311954648;SOX5:-0.0209463811732;PAX2:-0.0407712149958;NFIL3:-0.0460277623231;TFAP2B:-0.0480178412032;HNF1A:-0.0510912610307;ADNP_IRX_SIX_ZHX:-0.0641106287564;CEBPA,B_DDIT3:-0.0724841813159;NR5A1,2:-0.0785739637309;ELF1,2,4:-0.0813315804332;GTF2I:-0.082191673157;NR6A1:-0.0945782037454;SPZ1:-0.10081061831;FOSL2:-0.108029965003;ZNF148:-0.109377761607;AHR_ARNT_ARNT2:-0.116620922696;TLX2:-0.118695543047;SMAD1..7,9:-0.120104118389;FOXP3:-0.1278594665;IRF1,2:-0.141968625014;TFDP1:-0.143725605446;FOXM1:-0.158251786413;TFAP2{A,C}:-0.161111398116;E2F1..5:-0.168275476568;IRF7:-0.169797510588;STAT2,4,6:-0.175131474906;FOXO1,3,4:-0.176413162972;ZFP161:-0.184284093453;SP1:-0.195375374417;MYFfamily:-0.197573799541;PRDM1:-0.208230847965;ZIC1..3:-0.210377553575;RUNX1..3:-0.217972522253;LMO2:-0.218120307472;NR1H4:-0.220241676095;MYB:-0.247425611318;CREB1:-0.279184878095;JUN:-0.280070648808;HNF4A_NR2F1,2:-0.283256212195;FOXN1:-0.30366889179;REST:-0.34123182631;EGR1..3:-0.34711932738;STAT1,3:-0.368730678347;RREB1:-0.372657444644;RFX1:-0.377678200184;PAX6:-0.380084411356;SPI1:-0.39006940556;NFY{A,B,C}:-0.396774329093;IKZF2:-0.40073177307;FOXD3:-0.431227961794;FOXA2:-0.438290141241;FOX{I1,J2}:-0.438590036869;NFKB1_REL_RELA:-0.45712004977;TOPORS:-0.474578187598;PATZ1:-0.475557912675;ETS1,2:-0.486122296612;FOXP1:-0.535037171277;MED-1{core}:-0.536266984882;EP300:-0.549712157808;CRX:-0.568320073709;PITX1..3:-0.583209143162;VSX1,2:-0.583753021378;ZNF423:-0.5901876991;PAX3,7:-0.603744722066;OCT4_SOX2{dimer}:-0.623760231665;SPIB:-0.626315816937;NKX2-3_NKX2-5:-0.626544055357;HOXA9_MEIS1:-0.636004855346;SOX{8,9,10}:-0.687233211121;ATF5_CREB3:-0.688507774512;SNAI1..3:-0.702454677501;RFX2..5_RFXANK_RFXAP:-0.709254531963;NKX6-1,2:-0.718955539992;SOX2:-0.731060675152;BPTF:-0.745728445036;FOX{D1,D2}:-0.765925002381;ATF2:-0.785716610509;ATF4:-0.827636997692;GATA6:-0.836683293753;POU5F1:-0.840045043575;RBPJ:-0.841060682726;CUX2:-0.875454479801;NANOG:-0.917141630032;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.943286262595;BREu{core}:-1.08358530122;POU2F1..3:-1.08688585015;ZEB1:-1.12743331185;FOXQ1:-1.18019171829;FOX{F1,F2,J1}:-1.18481569425;RORA:-1.25503520778;PBX1:-1.32619921356
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11241-116D8;search_select_hide=table117:FF:11241-116D8
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Myoblast, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10870
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stagefetus
sexfemale
age58
cell typeskeletal muscle myoblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberSKM1
catalog numberSC3525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004887
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10870 CAGE DRX008367 DRR009239
Accession ID Hg19

Library idBAMCTSS
CNhs10870 DRZ000664 DRZ002049
Accession ID Hg38

Library idBAMCTSS
CNhs10870 DRZ012014 DRZ013399
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004887
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.ATGTCA sRNA-Seq DRX037139 DRR041505
Accession ID Hg19

Library idBAMCTSS
SRhi10009.ATGTCA DRZ007147


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.00358
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0883
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.269
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.11
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.119
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0178
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0587
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.348
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.219
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.336
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.272
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.334
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.294
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00407
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0374
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0587
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.019
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0154
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.222
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.157
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0587
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0587
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.157
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.695
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.892
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.11
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.389
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0101
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.61
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10870

Jaspar motifP-value
MA0002.20.478
MA0003.10.888
MA0004.10.704
MA0006.10.533
MA0007.10.0991
MA0009.10.0985
MA0014.10.464
MA0017.10.449
MA0018.22.02598e-4
MA0019.10.299
MA0024.10.0379
MA0025.19.4199e-4
MA0027.10.716
MA0028.10.00221
MA0029.10.356
MA0030.10.00793
MA0031.10.0115
MA0035.20.00272
MA0038.10.487
MA0039.20.847
MA0040.10.986
MA0041.10.992
MA0042.10.717
MA0043.12.36602e-5
MA0046.10.0479
MA0047.20.108
MA0048.10.692
MA0050.10.0105
MA0051.10.433
MA0052.10.0831
MA0055.10.89
MA0057.10.38
MA0058.10.801
MA0059.10.355
MA0060.11.02236e-5
MA0061.10.00756
MA0062.20.687
MA0065.20.126
MA0066.10.511
MA0067.10.0218
MA0068.10.841
MA0069.10.145
MA0070.10.708
MA0071.10.514
MA0072.10.437
MA0073.10.934
MA0074.10.775
MA0076.10.0141
MA0077.10.248
MA0078.10.352
MA0079.20.742
MA0080.21.83327e-7
MA0081.10.19
MA0083.10.00179
MA0084.10.119
MA0087.10.73
MA0088.10.062
MA0090.12.12849e-5
MA0091.10.244
MA0092.10.267
MA0093.10.877
MA0099.20.115
MA0100.10.909
MA0101.15.78582e-5
MA0102.20.0303
MA0103.17.98415e-5
MA0104.20.294
MA0105.10.126
MA0106.10.245
MA0107.11.37591e-4
MA0108.20.0167
MA0111.10.189
MA0112.20.0613
MA0113.10.196
MA0114.10.248
MA0115.10.182
MA0116.10.719
MA0117.10.626
MA0119.10.1
MA0122.10.567
MA0124.10.529
MA0125.10.696
MA0131.10.91
MA0135.10.324
MA0136.12.68323e-6
MA0137.20.976
MA0138.20.405
MA0139.10.481
MA0140.10.205
MA0141.10.88
MA0142.10.0435
MA0143.10.507
MA0144.10.587
MA0145.10.132
MA0146.10.59
MA0147.10.725
MA0148.10.34
MA0149.10.823
MA0150.10.736
MA0152.10.281
MA0153.10.356
MA0154.10.761
MA0155.10.497
MA0156.10.0357
MA0157.10.453
MA0159.10.753
MA0160.10.128
MA0162.10.0866
MA0163.10.332
MA0164.10.965
MA0258.10.47
MA0259.10.0993



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10870

Novel motifP-value
10.509
100.108
1000.755
1010.237
1020.251
1030.106
1040.831
1050.00303
1060.0498
1070.815
1080.475
1090.109
110.613
1100.479
1110.644
1120.629
1130.678
1140.108
1150.354
1160.16
1170.374
1180.579
1190.814
120.776
1200.23
1210.867
1220.0529
1230.00111
1240.0982
1250.462
1260.867
1270.719
1280.0956
1290.946
130.882
1300.462
1310.427
1320.719
1330.0714
1340.0176
1350.367
1360.278
1370.377
1380.22
1390.987
140.0702
1400.0764
1410.316
1420.8
1430.556
1440.793
1450.702
1460.572
1470.0904
1480.754
1490.414
150.878
1500.894
1510.881
1520.0688
1530.844
1540.766
1558.49239e-4
1560.375
1570.0286
1580.0205
1590.27
160.123
1600.746
1610.616
1620.926
1630.391
1640.98
1650.287
1660.724
1670.86
1680.602
1690.159
170.859
180.317
190.16
20.473
200.941
210.0199
220.672
230.956
240.612
250.858
260.682
270.646
280.266
290.593
30.595
300.646
310.601
323.34379e-4
330.877
340.18
350.06
360.00902
370.102
380.587
390.159
40.174
400.0625
410.259
420.591
430.664
440.251
450.105
460.779
470.634
480.65
490.167
50.974
500.408
510.632
520.453
530.0323
540.609
550.344
560.965
570.923
580.147
590.83
60.308
600.233
610.778
620.502
630.447
640.08
650.42
660.557
670.398
680.851
690.497
70.676
700.899
710.359
720.645
730.0024
740.16
750.319
760.92
770.141
780.892
790.465
80.428
800.0952
810.519
820.663
830.632
840.966
850.989
860.919
870.0165
880.545
890.386
90.97
900.636
910.282
920.763
930.975
940.619
950.129
960.697
970.875
980.0905
990.00546



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10870


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000515 (skeletal muscle myoblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000164 (human skeletal muscle myoblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)

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