FF:11398-118D3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005823 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005823 | ||
|accession_numbers=CAGE;DRX008369;DRR009241;DRZ000666;DRZ002051;DRZ012016;DRZ013401 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037150;DRR041516;DRZ007158 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000164 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor3.CNhs11908.11398-118D3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor3.CNhs11908.11398-118D3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor3.CNhs11908.11398-118D3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor3.CNhs11908.11398-118D3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor3.CNhs11908.11398-118D3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11398-118D3 | |id=FF:11398-118D3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000164 | ||
|is_obsolete= | |||
|library_id=CNhs11908 | |||
|library_id_phase_based=2:CNhs11908 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11398 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.CAGATC.11398 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11398 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.CAGATC.11398 | |||
|name=Myoblast, donor3 | |name=Myoblast, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11908,LSID834,release010,COMPLETED | |profile_hcage=CNhs11908,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|repeat_enrich_byname=0,0,0,0,-0.0264990904053786,0,0.0715362608323278,0.132938760828427,0.0715362608323278,0,0,0,0.0715362608323278,0,0,0,0.339967860087304,0,-0.00137793995004787,-0.071978881691144,0,0,0.0040195194787635,0,0.277679066202623,0,0,0.0715362608323278,0,0,0,0,-0.128119866952565,0,0.227266514613308,0,0,0.0715362608323278,0,0,0.111425892918206,0,-0.0354185280481982,0.0645944997510587,0,0,0,0,0.227894967654369,0,-0.120879483793741,-0.0111839074910895,0,0.319053356448282,-0.04680465889238,0,0,0,0.0466441298948314,-0.0283071475071357,0,0,0.0528278117656016,0.299125707257972,0,0,-0.391044581551635,0,0.252458362620964,0.253506575592057,0,-0.108803390396033,0,0,0,0,0,0,0,0,0,0,0,0.117114196696039,0.0258548473489318,0,0,0,0,-0.151859591734457,0,0,-0.0564008166395618,0.00210743073104203,-0.00132825715131607,-0.317380127341906,0,0.170318551792047,-0.0570856710972047,-0.38760076197039,0.0142615706681485,0.0393236923451382,0.282726559252113,0,0.135766692749447,0.17924911364207,0.0289029629412657,-0.0732717441140172,0,0.232672055829362,-0.0555137941144113,0,0,0,0.165324375014677,0,-0.0271687839906318,0.0320415270277697,0,0.165973112452015,-0.0287368510202575,-0.0196629688817626,-0.216771822216838,0.0320037323756573,0.129710282476274,-0.00145002546684026,0.10923168845534,0.132938760828427,0,-0.00576345458921734,-0.0769690353384593,-0.142246451384997,-0.143117894376719,0.00459851762267363,0.0609401598362729,0.209334805125255,0,0.157930948383224,-0.12028758413437,0,0.128969120642489,0.159727770788209,0.0715362608323278,0,0.0605228348448313,0,0,-0.0413373162218502,-0.0667838642282058,-0.0999168007271178,0,-0.0851955053488255,0.0446593159069458,-0.074436535872559,0,-0.427046549581513,0.240040756512816,-0.0203950861586691,-0.126582305950492,0,-0.0765577055548698,0.153866297440667,0.0408729221692674,-0.144715739189114,0.0130894340205027,0.0737921713946467,0.0156872899779218,-0.0667213570851621,0.541736634250053,-0.0298283537003109,-0.0881268324752877,0,0.114411355071968,-0.362612792304519,-0.0167567624529292,-0.126013023826918,0.0208602362257372,0.176433163539934,0,-0.00767265890182489,0.0158461865548425,-0.49391547669666,-0.353708209756963,-0.25256383286441,0.18948042451177,0,-0.0403255729216783,-0.402080283803764,0.059723352021472,-0.0229331788483673,0,0.0715362608323278,-0.0174283225062124,-0.00402693987091962,-0.0825195265902867,0.0716628115502894,0,0.0712829927841921,0,0,0.11987925617288,-0.163939776932061,0,0.280791952104834,0.0844661124282667,-0.0820597996907513,0.161707992767689,0,0.0079222323878998,0.430674961606496,0,0.0715362608323278,0.392028041772317,0.0715362608323278,-0.174084234998578,-0.066600799770479,0.0357681304161639,0.486534570116039,0,0,0.00919777575110106,0,0.0727164305542329,0.0214886580902184,0,0.167016827217789,0.116976032035784,0,0.0357681304161639,0,-0.018843968543814,0,0,0,0,0,0,0.000403217465050287,-0.0453019385506839,0.0312173237537621,0.0715362608323278,0.0301831271762587,0,0.0715362608323278,0,0,0,0,0,0.660981078332064,0.58005399925602,0,0.00992134515200668,0.0933627708581385,0,0,0,0.201174721263139,0.0313424326479672,0,0.00107605433079525,0,0,0,0,0.0467977710392156,0,0,0.0357681304161639,0,0.0138058037786638,0.0452990395679185,0,0,0,-0.27695440160179,0,0,0.47270827880196,0.0693795079966817,-0.0108751178205035,0,0,0.139468874156678,0,-0.137741686879323,-0.0100456187145136,0,-0.070812920299128,0.00182282769010955,-0.470204407048596,0,0.132938760828427,-0.128408370961461,0,0,0.228139145861606,-0.0108339621333385,0,-0.0115920419946362,0,0,0,0,0,0,-0.0813757515713287,0.105378433933225,0,0,0,0,0,0,0,0,0,0,0.21232792204639,-0.0922240566585104,0,0,0,0,0,0,0,0.0423633573353104,-0.211915448069647,0,0,0,0,0,0,0,0,-0.118582495635341,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.205825871361186,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0517828252031199,-0.00272996129696534,0,0,0,0,0,0,0,-0.203297037373763,0,0,0,0,-0.113884373708977,0,0,0,-0.0332601239568286,0,-0.0273792692579591,0.132938760828427,0,0,0,0,0,0.0357681304161639,0,0,0,0,0,0,0,0,0,0,0.0357681304161639,0,0,0,0.635628814217435,0.185876689449262,0.270725549606819,0.0070044864518243,0,0,0.213539087069382,0,0,0,0,0,0,0.00442770638763687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0357681304161639,-0.0348580438050884,0,0,0,0,0.38605065397021,0,0,-0.0979578962680575,0,0,-0.0562646793843622,0,0,0,0,0.00888921258255862,0,0.184731438145251,0.335844333699065,0.0173023118877475,0,0,0,0.168463971997572,0.0715362608323278,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.117289497371346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0.0715362608323278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.026360687940767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0715362608323278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.218703325234118,0,0,0,0,0,0,0,0,0.316885339317005,0,0,0,0,-0.0482220752390542,0,0.150202362512664,0,0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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC3525 | |rna_catalog_number=SC3525 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118D3 | |rna_tube_id=118D3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.CAGATC | |||
|sample_age=59 | |sample_age=59 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.58631779015271e-229!GO:0005737;cytoplasm;7.05664072556138e-185!GO:0043226;organelle;1.93968222233318e-184!GO:0043229;intracellular organelle;6.40777972539287e-184!GO:0043231;intracellular membrane-bound organelle;1.44515721303144e-179!GO:0043227;membrane-bound organelle;2.678357096445e-179!GO:0044422;organelle part;7.67615542776578e-147!GO:0044446;intracellular organelle part;2.61083774974815e-145!GO:0044444;cytoplasmic part;1.11195179580711e-138!GO:0032991;macromolecular complex;2.18854595707774e-102!GO:0005515;protein binding;1.39947484303628e-80!GO:0030529;ribonucleoprotein complex;4.41516440243849e-80!GO:0044237;cellular metabolic process;9.18820975124006e-77!GO:0044238;primary metabolic process;1.55981419320179e-76!GO:0043233;organelle lumen;4.55771108880672e-71!GO:0031974;membrane-enclosed lumen;4.55771108880672e-71!GO:0043170;macromolecule metabolic process;5.70957922818048e-71!GO:0044428;nuclear part;3.1543320631852e-70!GO:0005634;nucleus;5.85394566626621e-67!GO:0003723;RNA binding;1.5994898208507e-62!GO:0005739;mitochondrion;6.45452815153227e-58!GO:0043234;protein complex;1.02443442571792e-53!GO:0031090;organelle membrane;2.02853762971353e-52!GO:0016043;cellular component organization and biogenesis;2.26718075309327e-48!GO:0005840;ribosome;1.62028171892097e-47!GO:0019538;protein metabolic process;1.20295138054249e-44!GO:0006396;RNA processing;7.14432094537003e-44!GO:0015031;protein transport;1.29615892739899e-42!GO:0006412;translation;1.61077955409886e-42!GO:0033036;macromolecule localization;2.78127896985776e-42!GO:0031981;nuclear lumen;3.54466513000247e-42!GO:0003735;structural constituent of ribosome;1.74846103785345e-41!GO:0044429;mitochondrial part;7.94643569543008e-41!GO:0044260;cellular macromolecule metabolic process;1.19327206921248e-39!GO:0045184;establishment of protein localization;4.21969827105449e-39!GO:0008104;protein localization;5.13315999795701e-39!GO:0044267;cellular protein metabolic process;7.8739927184567e-39!GO:0043283;biopolymer metabolic process;8.07964707687365e-39!GO:0031967;organelle envelope;3.10777751458918e-38!GO:0031975;envelope;7.76024527681788e-38!GO:0005829;cytosol;3.22132411135732e-37!GO:0046907;intracellular transport;2.52711421435284e-36!GO:0009058;biosynthetic process;1.22270887193089e-35!GO:0016071;mRNA metabolic process;1.49883854548194e-35!GO:0043228;non-membrane-bound organelle;2.31126634015348e-35!GO:0043232;intracellular non-membrane-bound organelle;2.31126634015348e-35!GO:0033279;ribosomal subunit;1.30801560712614e-34!GO:0010467;gene expression;4.98408259484248e-34!GO:0009059;macromolecule biosynthetic process;5.23804817914117e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.5816308931131e-33!GO:0008380;RNA splicing;5.94083123184597e-33!GO:0044249;cellular biosynthetic process;4.02739517588874e-32!GO:0006996;organelle organization and biogenesis;4.89752616181354e-32!GO:0006397;mRNA processing;8.66329808994347e-31!GO:0006886;intracellular protein transport;1.66884953749591e-29!GO:0065003;macromolecular complex assembly;1.53836363488801e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.87423989577555e-27!GO:0005740;mitochondrial envelope;7.87830791233756e-27!GO:0022607;cellular component assembly;2.85342508580623e-26!GO:0005654;nucleoplasm;1.74128970187205e-25!GO:0031966;mitochondrial membrane;2.75470122713708e-25!GO:0019866;organelle inner membrane;5.17291345068525e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.17291345068525e-25!GO:0006259;DNA metabolic process;6.17228220593257e-25!GO:0005681;spliceosome;1.66381167338969e-23!GO:0005743;mitochondrial inner membrane;2.68885665694018e-23!GO:0051641;cellular localization;3.06363299299714e-23!GO:0051649;establishment of cellular localization;3.18983540095813e-23!GO:0012505;endomembrane system;1.39397707397026e-22!GO:0007049;cell cycle;5.28900205581609e-22!GO:0005783;endoplasmic reticulum;1.89375436716192e-21!GO:0006119;oxidative phosphorylation;2.2216883611825e-21!GO:0006457;protein folding;4.28135050740171e-21!GO:0044445;cytosolic part;2.326655517024e-20!GO:0044451;nucleoplasm part;2.97782576254623e-20!GO:0044455;mitochondrial membrane part;2.85630127392148e-19!GO:0000166;nucleotide binding;6.96055508903369e-19!GO:0044432;endoplasmic reticulum part;1.43517146011237e-18!GO:0015934;large ribosomal subunit;3.56474237806308e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.88942410750205e-18!GO:0048770;pigment granule;4.99377700470787e-18!GO:0042470;melanosome;4.99377700470787e-18!GO:0016462;pyrophosphatase activity;5.1213280296148e-18!GO:0000278;mitotic cell cycle;5.39727434554224e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;6.97765654213989e-18!GO:0006512;ubiquitin cycle;7.47979931699731e-18!GO:0003676;nucleic acid binding;7.8585125421432e-18!GO:0017111;nucleoside-triphosphatase activity;1.00663292625431e-17!GO:0015935;small ribosomal subunit;2.88050280673323e-17!GO:0005730;nucleolus;4.24290500243016e-17!GO:0031980;mitochondrial lumen;6.72991589480785e-17!GO:0005759;mitochondrial matrix;6.72991589480785e-17!GO:0005794;Golgi apparatus;7.66904895291307e-17!GO:0022402;cell cycle process;1.15564513961458e-16!GO:0022618;protein-RNA complex assembly;1.38526173623149e-16!GO:0016874;ligase activity;2.08519246450801e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.75919775174249e-16!GO:0006974;response to DNA damage stimulus;7.94395728254837e-16!GO:0044265;cellular macromolecule catabolic process;9.86975891032085e-16!GO:0005746;mitochondrial respiratory chain;1.11027880997477e-15!GO:0019941;modification-dependent protein catabolic process;1.40989597532164e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.40989597532164e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.41119364171096e-15!GO:0044257;cellular protein catabolic process;2.07845952097597e-15!GO:0043285;biopolymer catabolic process;2.30062516679843e-15!GO:0051186;cofactor metabolic process;2.82514448150663e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.67683972852209e-15!GO:0008134;transcription factor binding;5.17901725952059e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.30148684541948e-15!GO:0006605;protein targeting;2.51184148899457e-14!GO:0008135;translation factor activity, nucleic acid binding;2.88015557779465e-14!GO:0030163;protein catabolic process;3.65137851050053e-14!GO:0009057;macromolecule catabolic process;3.68409334569107e-14!GO:0051082;unfolded protein binding;5.85213536385415e-14!GO:0048193;Golgi vesicle transport;9.0576282213561e-14!GO:0050136;NADH dehydrogenase (quinone) activity;9.0576282213561e-14!GO:0003954;NADH dehydrogenase activity;9.0576282213561e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.0576282213561e-14!GO:0005761;mitochondrial ribosome;9.97821614808107e-14!GO:0000313;organellar ribosome;9.97821614808107e-14!GO:0016070;RNA metabolic process;1.71597403643233e-13!GO:0022403;cell cycle phase;2.13820443802218e-13!GO:0000087;M phase of mitotic cell cycle;2.24245730683438e-13!GO:0007067;mitosis;4.08080094974854e-13!GO:0006281;DNA repair;4.8099446900737e-13!GO:0032553;ribonucleotide binding;5.68380398464987e-13!GO:0032555;purine ribonucleotide binding;5.68380398464987e-13!GO:0017076;purine nucleotide binding;6.71494392235952e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.27527202581845e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.76254242039509e-13!GO:0044248;cellular catabolic process;7.76254242039509e-13!GO:0005694;chromosome;9.96920627493572e-13!GO:0051301;cell division;1.19254588324978e-12!GO:0005793;ER-Golgi intermediate compartment;1.28002780754764e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.20598295299091e-12!GO:0042773;ATP synthesis coupled electron transport;2.20598295299091e-12!GO:0005789;endoplasmic reticulum membrane;2.31352955890228e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.48218997710926e-12!GO:0005635;nuclear envelope;3.27166807410264e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.49956094100854e-12!GO:0045271;respiratory chain complex I;3.49956094100854e-12!GO:0005747;mitochondrial respiratory chain complex I;3.49956094100854e-12!GO:0016192;vesicle-mediated transport;3.57884974609628e-12!GO:0031965;nuclear membrane;4.39100683836321e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.08510273207675e-12!GO:0000375;RNA splicing, via transesterification reactions;5.08510273207675e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.08510273207675e-12!GO:0043412;biopolymer modification;5.27072898419776e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.59974265727937e-12!GO:0006732;coenzyme metabolic process;8.35811830573291e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.00062523713527e-11!GO:0042254;ribosome biogenesis and assembly;1.31966398937783e-11!GO:0005524;ATP binding;1.33418532713975e-11!GO:0003743;translation initiation factor activity;2.91411624471496e-11!GO:0032559;adenyl ribonucleotide binding;4.1965634687971e-11!GO:0009719;response to endogenous stimulus;4.73916724460796e-11!GO:0044427;chromosomal part;5.6898626378524e-11!GO:0006464;protein modification process;6.77476125586455e-11!GO:0044453;nuclear membrane part;7.00617446318325e-11!GO:0030554;adenyl nucleotide binding;7.07337066842363e-11!GO:0016604;nuclear body;7.29881167145388e-11!GO:0009259;ribonucleotide metabolic process;7.65537359289509e-11!GO:0006260;DNA replication;1.18133196111851e-10!GO:0006413;translational initiation;1.22107976104661e-10!GO:0008639;small protein conjugating enzyme activity;1.31690751515795e-10!GO:0006163;purine nucleotide metabolic process;1.40310867233003e-10!GO:0000279;M phase;2.5562656799395e-10!GO:0051276;chromosome organization and biogenesis;2.59164754747692e-10!GO:0004842;ubiquitin-protein ligase activity;2.59757861151267e-10!GO:0019787;small conjugating protein ligase activity;3.42054315038314e-10!GO:0042623;ATPase activity, coupled;3.88279914747552e-10!GO:0009150;purine ribonucleotide metabolic process;4.25751161006504e-10!GO:0016887;ATPase activity;4.61822493412951e-10!GO:0006446;regulation of translational initiation;4.82638970363026e-10!GO:0009055;electron carrier activity;7.51562531876057e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.68165575681772e-10!GO:0006164;purine nucleotide biosynthetic process;1.52674625907094e-09!GO:0005768;endosome;1.67387326238491e-09!GO:0008565;protein transporter activity;1.95926759804564e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.95943925909799e-09!GO:0009260;ribonucleotide biosynthetic process;2.52753265839036e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.63871023443057e-09!GO:0003712;transcription cofactor activity;2.79255542170528e-09!GO:0043687;post-translational protein modification;3.50071776173185e-09!GO:0005788;endoplasmic reticulum lumen;3.93851556033049e-09!GO:0009141;nucleoside triphosphate metabolic process;4.4206358881702e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.57803107954142e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.69850142249799e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.69850142249799e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.39887158377897e-09!GO:0016881;acid-amino acid ligase activity;5.4283598119464e-09!GO:0012501;programmed cell death;6.52564257866375e-09!GO:0006913;nucleocytoplasmic transport;6.91459636906706e-09!GO:0016607;nuclear speck;7.07819837708524e-09!GO:0005643;nuclear pore;9.77462506547727e-09!GO:0000074;regulation of progression through cell cycle;9.77862670283752e-09!GO:0051726;regulation of cell cycle;1.00288015129357e-08!GO:0015630;microtubule cytoskeleton;1.1684637504183e-08!GO:0051169;nuclear transport;1.28717421923718e-08!GO:0006461;protein complex assembly;1.320673931834e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.40200799131289e-08!GO:0006915;apoptosis;1.61009291911334e-08!GO:0004386;helicase activity;1.79644070933328e-08!GO:0046034;ATP metabolic process;1.92950132503198e-08!GO:0009060;aerobic respiration;2.08593297180265e-08!GO:0015986;ATP synthesis coupled proton transport;2.32697309562456e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.32697309562456e-08!GO:0006399;tRNA metabolic process;3.05887997654497e-08!GO:0065002;intracellular protein transport across a membrane;3.32968695192096e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.41948703024773e-08!GO:0019829;cation-transporting ATPase activity;5.28960359491463e-08!GO:0030120;vesicle coat;5.51745183595238e-08!GO:0030662;coated vesicle membrane;5.51745183595238e-08!GO:0045333;cellular respiration;5.89284600360357e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.27579173414851e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.27579173414851e-08!GO:0044431;Golgi apparatus part;6.76464359820804e-08!GO:0008219;cell death;7.74107941731128e-08!GO:0016265;death;7.74107941731128e-08!GO:0006323;DNA packaging;9.23410368683674e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.12621192628484e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.12621192628484e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.20167626184124e-07!GO:0048523;negative regulation of cellular process;1.33533627016618e-07!GO:0017038;protein import;1.55619581172891e-07!GO:0006364;rRNA processing;1.5718658633741e-07!GO:0009056;catabolic process;1.79940829883034e-07!GO:0008026;ATP-dependent helicase activity;1.91111002430421e-07!GO:0003697;single-stranded DNA binding;1.99126598476311e-07!GO:0050657;nucleic acid transport;2.00257025432117e-07!GO:0051236;establishment of RNA localization;2.00257025432117e-07!GO:0050658;RNA transport;2.00257025432117e-07!GO:0006403;RNA localization;2.00832838455195e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.01131205042862e-07!GO:0048475;coated membrane;2.60358959891539e-07!GO:0030117;membrane coat;2.60358959891539e-07!GO:0051188;cofactor biosynthetic process;2.83353317676297e-07!GO:0006099;tricarboxylic acid cycle;3.05934528745299e-07!GO:0046356;acetyl-CoA catabolic process;3.05934528745299e-07!GO:0046930;pore complex;3.2684758694013e-07!GO:0016072;rRNA metabolic process;3.33047457903807e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.60141155967981e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.60141155967981e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.60141155967981e-07!GO:0006366;transcription from RNA polymerase II promoter;3.94488060297408e-07!GO:0006754;ATP biosynthetic process;4.32952124000192e-07!GO:0006753;nucleoside phosphate metabolic process;4.32952124000192e-07!GO:0043038;amino acid activation;5.22444592988953e-07!GO:0006418;tRNA aminoacylation for protein translation;5.22444592988953e-07!GO:0043039;tRNA aminoacylation;5.22444592988953e-07!GO:0065004;protein-DNA complex assembly;5.75575371574185e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.93042384665966e-07!GO:0043566;structure-specific DNA binding;6.20169371501137e-07!GO:0050794;regulation of cellular process;7.34814091937577e-07!GO:0051187;cofactor catabolic process;7.96484202215327e-07!GO:0006084;acetyl-CoA metabolic process;8.7970253538493e-07!GO:0007005;mitochondrion organization and biogenesis;9.19057142582025e-07!GO:0005667;transcription factor complex;9.42276898121915e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.05904467087224e-06!GO:0031252;leading edge;1.10097091265344e-06!GO:0008092;cytoskeletal protein binding;1.13519532367802e-06!GO:0044440;endosomal part;1.51635937864344e-06!GO:0010008;endosome membrane;1.51635937864344e-06!GO:0009109;coenzyme catabolic process;1.52135221055076e-06!GO:0005798;Golgi-associated vesicle;1.54715944653361e-06!GO:0000151;ubiquitin ligase complex;1.70290314368825e-06!GO:0005773;vacuole;1.90750545987168e-06!GO:0016853;isomerase activity;1.91266799380878e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.08109452180298e-06!GO:0006333;chromatin assembly or disassembly;2.35403938818307e-06!GO:0016491;oxidoreductase activity;2.43194636040616e-06!GO:0009117;nucleotide metabolic process;2.53880721939855e-06!GO:0005819;spindle;2.53913907751614e-06!GO:0005813;centrosome;2.97990860121765e-06!GO:0003924;GTPase activity;2.97990860121765e-06!GO:0032446;protein modification by small protein conjugation;3.25399233426424e-06!GO:0048519;negative regulation of biological process;3.30421474563247e-06!GO:0051329;interphase of mitotic cell cycle;3.65951355727246e-06!GO:0016567;protein ubiquitination;4.28004334244966e-06!GO:0031988;membrane-bound vesicle;4.53079873769154e-06!GO:0006613;cotranslational protein targeting to membrane;4.85319408066718e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.9293441323101e-06!GO:0045259;proton-transporting ATP synthase complex;5.90033543240962e-06!GO:0043069;negative regulation of programmed cell death;6.06534943758098e-06!GO:0000139;Golgi membrane;6.21485704503645e-06!GO:0051028;mRNA transport;6.38703403839219e-06!GO:0051325;interphase;6.53666714958655e-06!GO:0005815;microtubule organizing center;6.56155628762454e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.56155628762454e-06!GO:0051246;regulation of protein metabolic process;6.64476708702678e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.88248151545606e-06!GO:0008654;phospholipid biosynthetic process;7.25253377070684e-06!GO:0007010;cytoskeleton organization and biogenesis;7.26603115918205e-06!GO:0009108;coenzyme biosynthetic process;7.2765566212609e-06!GO:0000785;chromatin;8.02469395661e-06!GO:0016859;cis-trans isomerase activity;8.63143019552285e-06!GO:0006916;anti-apoptosis;8.852708640823e-06!GO:0016779;nucleotidyltransferase activity;9.16237600801242e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.49454096338671e-06!GO:0006752;group transfer coenzyme metabolic process;9.65269993678168e-06!GO:0005769;early endosome;9.6782978452577e-06!GO:0043066;negative regulation of apoptosis;1.0395742784045e-05!GO:0000245;spliceosome assembly;1.09407165557099e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.25226927280266e-05!GO:0005770;late endosome;1.30558567837634e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.40919063142875e-05!GO:0000775;chromosome, pericentric region;1.54081536131546e-05!GO:0043623;cellular protein complex assembly;1.59411040141666e-05!GO:0000323;lytic vacuole;1.63378440324219e-05!GO:0005764;lysosome;1.63378440324219e-05!GO:0003714;transcription corepressor activity;1.8016173735405e-05!GO:0030867;rough endoplasmic reticulum membrane;2.02578626395422e-05!GO:0016740;transferase activity;2.07126300691486e-05!GO:0007051;spindle organization and biogenesis;2.22631010759596e-05!GO:0050789;regulation of biological process;2.76204083970401e-05!GO:0016568;chromatin modification;2.96515580405454e-05!GO:0051170;nuclear import;3.14011299099201e-05!GO:0051789;response to protein stimulus;3.73229453735018e-05!GO:0006986;response to unfolded protein;3.73229453735018e-05!GO:0016787;hydrolase activity;4.35774115913299e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.45627241881936e-05!GO:0006334;nucleosome assembly;4.64421279271725e-05!GO:0046474;glycerophospholipid biosynthetic process;4.64421279271725e-05!GO:0031982;vesicle;4.80198148279191e-05!GO:0016564;transcription repressor activity;5.38776255922649e-05!GO:0005762;mitochondrial large ribosomal subunit;5.89349958760268e-05!GO:0000315;organellar large ribosomal subunit;5.89349958760268e-05!GO:0004298;threonine endopeptidase activity;6.02191858885927e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.05186997405252e-05!GO:0000075;cell cycle checkpoint;6.27880851669014e-05!GO:0006606;protein import into nucleus;6.37803620903673e-05!GO:0005791;rough endoplasmic reticulum;6.61369542140075e-05!GO:0045454;cell redox homeostasis;6.9700290166623e-05!GO:0051427;hormone receptor binding;6.9700290166623e-05!GO:0031410;cytoplasmic vesicle;6.99275641135655e-05!GO:0043067;regulation of programmed cell death;7.1740208900554e-05!GO:0031324;negative regulation of cellular metabolic process;7.4487376966673e-05!GO:0042981;regulation of apoptosis;7.62573835099557e-05!GO:0030133;transport vesicle;7.90712012116653e-05!GO:0019899;enzyme binding;8.90366448961759e-05!GO:0006612;protein targeting to membrane;0.000101846647577135!GO:0008361;regulation of cell size;0.000108284993345456!GO:0003724;RNA helicase activity;0.000108446741402882!GO:0003713;transcription coactivator activity;0.000109693614728415!GO:0031497;chromatin assembly;0.000115513512134025!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000115784646337828!GO:0006091;generation of precursor metabolites and energy;0.000127164154126074!GO:0006793;phosphorus metabolic process;0.000130975821935977!GO:0006796;phosphate metabolic process;0.000130975821935977!GO:0016049;cell growth;0.000141988198100432!GO:0035257;nuclear hormone receptor binding;0.000144232627727257!GO:0043021;ribonucleoprotein binding;0.000152138819235466!GO:0006261;DNA-dependent DNA replication;0.000163751113765439!GO:0005048;signal sequence binding;0.000169081163910659!GO:0033116;ER-Golgi intermediate compartment membrane;0.000171496826354834!GO:0030036;actin cytoskeleton organization and biogenesis;0.000181763846684043!GO:0045786;negative regulation of progression through cell cycle;0.000181928523167666!GO:0031968;organelle outer membrane;0.000183977771195271!GO:0019867;outer membrane;0.000211827709012035!GO:0016563;transcription activator activity;0.000212013841051868!GO:0005525;GTP binding;0.000255891063476825!GO:0030029;actin filament-based process;0.000279585668226499!GO:0005885;Arp2/3 protein complex;0.000283025364648162!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000290861010446739!GO:0000314;organellar small ribosomal subunit;0.000297073753091163!GO:0005763;mitochondrial small ribosomal subunit;0.000297073753091163!GO:0008250;oligosaccharyl transferase complex;0.000298205399565285!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000345651873467224!GO:0046489;phosphoinositide biosynthetic process;0.000352521838448896!GO:0016363;nuclear matrix;0.000363458176280281!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000388882726237959!GO:0004576;oligosaccharyl transferase activity;0.000391027765382938!GO:0001558;regulation of cell growth;0.000398161478088751!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000400298735799196!GO:0009892;negative regulation of metabolic process;0.000414927639847318!GO:0005905;coated pit;0.000416497108006686!GO:0044262;cellular carbohydrate metabolic process;0.000451082644418603!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000491918528754428!GO:0030663;COPI coated vesicle membrane;0.000504450306336979!GO:0030126;COPI vesicle coat;0.000504450306336979!GO:0000776;kinetochore;0.000560005295445772!GO:0006302;double-strand break repair;0.000571417258095784!GO:0016310;phosphorylation;0.000595570084396073!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000630474867122965!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000634911842119284!GO:0003729;mRNA binding;0.000635010294804814!GO:0001726;ruffle;0.000696785581850901!GO:0005741;mitochondrial outer membrane;0.000701694423464828!GO:0003899;DNA-directed RNA polymerase activity;0.00073936227158989!GO:0009165;nucleotide biosynthetic process;0.000751475207503123!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000779464865070425!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000787980171547512!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000805925646608564!GO:0003779;actin binding;0.000814325486317572!GO:0031072;heat shock protein binding;0.000846551967947006!GO:0051252;regulation of RNA metabolic process;0.000861003946328631!GO:0005657;replication fork;0.000862824533184345!GO:0043681;protein import into mitochondrion;0.000871799184459817!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000905573855287437!GO:0042802;identical protein binding;0.00092068440699283!GO:0030137;COPI-coated vesicle;0.00092068440699283!GO:0018196;peptidyl-asparagine modification;0.000964833642470107!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000964833642470107!GO:0000059;protein import into nucleus, docking;0.000969833406057397!GO:0006839;mitochondrial transport;0.000988940086068338!GO:0051920;peroxiredoxin activity;0.00100234199440905!GO:0006650;glycerophospholipid metabolic process;0.00104224581918612!GO:0048471;perinuclear region of cytoplasm;0.00136966533741305!GO:0030176;integral to endoplasmic reticulum membrane;0.00141343252130641!GO:0008047;enzyme activator activity;0.00142945828354945!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00143828390166131!GO:0051168;nuclear export;0.0015698065518704!GO:0006891;intra-Golgi vesicle-mediated transport;0.0015922144916443!GO:0000082;G1/S transition of mitotic cell cycle;0.00161478771732081!GO:0007052;mitotic spindle organization and biogenesis;0.00161729644474142!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00170804070236346!GO:0032561;guanyl ribonucleotide binding;0.00174136105607348!GO:0019001;guanyl nucleotide binding;0.00174136105607348!GO:0006626;protein targeting to mitochondrion;0.00179062580348306!GO:0030658;transport vesicle membrane;0.00179560972710317!GO:0016044;membrane organization and biogenesis;0.00180232382012572!GO:0022890;inorganic cation transmembrane transporter activity;0.00181170861035451!GO:0048500;signal recognition particle;0.00184709112071729!GO:0044452;nucleolar part;0.00186780602625856!GO:0008186;RNA-dependent ATPase activity;0.00202045998943961!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00202785704983799!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00202785704983799!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00202785704983799!GO:0046467;membrane lipid biosynthetic process;0.00207025223028908!GO:0030132;clathrin coat of coated pit;0.00211317137727187!GO:0006383;transcription from RNA polymerase III promoter;0.00219895649604381!GO:0008094;DNA-dependent ATPase activity;0.00230469370831484!GO:0003690;double-stranded DNA binding;0.00234926303900723!GO:0019843;rRNA binding;0.00235407972268661!GO:0030027;lamellipodium;0.00235899476022255!GO:0016126;sterol biosynthetic process;0.00236303512055654!GO:0016481;negative regulation of transcription;0.00236539043790861!GO:0043488;regulation of mRNA stability;0.00254094900610045!GO:0043487;regulation of RNA stability;0.00254094900610045!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00263073971316339!GO:0015399;primary active transmembrane transporter activity;0.00263073971316339!GO:0051052;regulation of DNA metabolic process;0.00263122887605527!GO:0035258;steroid hormone receptor binding;0.0026600334696675!GO:0007050;cell cycle arrest;0.00291045880276712!GO:0008139;nuclear localization sequence binding;0.00291524118289737!GO:0008610;lipid biosynthetic process;0.00298300783928045!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00328075987780882!GO:0006509;membrane protein ectodomain proteolysis;0.00331642963981537!GO:0033619;membrane protein proteolysis;0.00331642963981537!GO:0006414;translational elongation;0.00357459995716634!GO:0007093;mitotic cell cycle checkpoint;0.00359203451888406!GO:0005874;microtubule;0.00359561759400744!GO:0001952;regulation of cell-matrix adhesion;0.00362639819821373!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00376677209695959!GO:0045047;protein targeting to ER;0.00376677209695959!GO:0015631;tubulin binding;0.00380939561133301!GO:0007059;chromosome segregation;0.00397557208508798!GO:0019222;regulation of metabolic process;0.00415098749051173!GO:0048522;positive regulation of cellular process;0.00425761145819299!GO:0007006;mitochondrial membrane organization and biogenesis;0.00427963971882795!GO:0046483;heterocycle metabolic process;0.00443678191902867!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00463516780184886!GO:0008312;7S RNA binding;0.00463703063923537!GO:0015992;proton transport;0.00479458645308492!GO:0008180;signalosome;0.00479458645308492!GO:0006950;response to stress;0.00485626525835649!GO:0030134;ER to Golgi transport vesicle;0.00489035361631497!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0050935460396914!GO:0030384;phosphoinositide metabolic process;0.00510360106404455!GO:0004004;ATP-dependent RNA helicase activity;0.00513446394934377!GO:0003678;DNA helicase activity;0.00525781222664825!GO:0030127;COPII vesicle coat;0.00526023678745973!GO:0012507;ER to Golgi transport vesicle membrane;0.00526023678745973!GO:0006310;DNA recombination;0.00526743293126942!GO:0030521;androgen receptor signaling pathway;0.00550141051120038!GO:0030660;Golgi-associated vesicle membrane;0.00550141051120038!GO:0065009;regulation of a molecular function;0.00550837240875963!GO:0030880;RNA polymerase complex;0.00551354241188302!GO:0030118;clathrin coat;0.00553397244615368!GO:0005869;dynactin complex;0.00554108576117794!GO:0004177;aminopeptidase activity;0.00556538987471705!GO:0006818;hydrogen transport;0.00571265326723259!GO:0006506;GPI anchor biosynthetic process;0.00576145756505614!GO:0003684;damaged DNA binding;0.00577093173973883!GO:0008022;protein C-terminus binding;0.00581925185052033!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00595673600898302!GO:0043284;biopolymer biosynthetic process;0.00602692661375418!GO:0016408;C-acyltransferase activity;0.00605752238973025!GO:0017166;vinculin binding;0.00608784599978257!GO:0065007;biological regulation;0.0062812814939006!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00692122034016171!GO:0007088;regulation of mitosis;0.00694584060738113!GO:0006497;protein amino acid lipidation;0.00727253501620154!GO:0031124;mRNA 3'-end processing;0.00746867963986826!GO:0031902;late endosome membrane;0.00761860144519059!GO:0040008;regulation of growth;0.00761860144519059!GO:0006402;mRNA catabolic process;0.00764734372563721!GO:0007034;vacuolar transport;0.00771043386035916!GO:0006505;GPI anchor metabolic process;0.00782132786655873!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00789746571448981!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00789746571448981!GO:0048487;beta-tubulin binding;0.0079736267740514!GO:0006595;polyamine metabolic process;0.00819178328691202!GO:0005684;U2-dependent spliceosome;0.00822346299776794!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00830859002637107!GO:0015002;heme-copper terminal oxidase activity;0.00830859002637107!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00830859002637107!GO:0004129;cytochrome-c oxidase activity;0.00830859002637107!GO:0031625;ubiquitin protein ligase binding;0.00914708496856581!GO:0016197;endosome transport;0.00914708496856581!GO:0005774;vacuolar membrane;0.00922025450618391!GO:0005862;muscle thin filament tropomyosin;0.00954630611415205!GO:0005096;GTPase activator activity;0.00968263632000987!GO:0032984;macromolecular complex disassembly;0.010119987544084!GO:0016251;general RNA polymerase II transcription factor activity;0.0101205165524434!GO:0007243;protein kinase cascade;0.0102794930354097!GO:0051087;chaperone binding;0.0106299743161404!GO:0008033;tRNA processing;0.0106433477909278!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0106433477909278!GO:0000428;DNA-directed RNA polymerase complex;0.0106433477909278!GO:0006352;transcription initiation;0.010866822667569!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0109755450804917!GO:0003756;protein disulfide isomerase activity;0.0114826862614159!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0114826862614159!GO:0008168;methyltransferase activity;0.0118277586662567!GO:0006695;cholesterol biosynthetic process;0.0122269323662444!GO:0000339;RNA cap binding;0.0123703891323297!GO:0031418;L-ascorbic acid binding;0.0123703891323297!GO:0051540;metal cluster binding;0.0123703891323297!GO:0051536;iron-sulfur cluster binding;0.0123703891323297!GO:0005637;nuclear inner membrane;0.0123703891323297!GO:0016741;transferase activity, transferring one-carbon groups;0.0124032624199044!GO:0050681;androgen receptor binding;0.0126986272158561!GO:0030659;cytoplasmic vesicle membrane;0.0127091331094357!GO:0003682;chromatin binding;0.0130904960795038!GO:0031901;early endosome membrane;0.0132485022096603!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0132867237883967!GO:0003711;transcription elongation regulator activity;0.0138247334333105!GO:0043022;ribosome binding;0.0139439520545035!GO:0005832;chaperonin-containing T-complex;0.0140823511892797!GO:0043492;ATPase activity, coupled to movement of substances;0.0142251666266941!GO:0003746;translation elongation factor activity;0.0143816613716306!GO:0051128;regulation of cellular component organization and biogenesis;0.0147602333612213!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0148540298871652!GO:0016860;intramolecular oxidoreductase activity;0.0148563237518268!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0151639804553554!GO:0030518;steroid hormone receptor signaling pathway;0.0154058511377209!GO:0007264;small GTPase mediated signal transduction;0.015513546934438!GO:0051287;NAD binding;0.0157510635500536!GO:0005876;spindle microtubule;0.0160438183230997!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.016438777028873!GO:0000049;tRNA binding;0.0166885861090538!GO:0043624;cellular protein complex disassembly;0.0170035989318581!GO:0015629;actin cytoskeleton;0.0173443469514842!GO:0042158;lipoprotein biosynthetic process;0.0174666036475127!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0176694097726537!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0179633861760322!GO:0043241;protein complex disassembly;0.0180523446635724!GO:0009112;nucleobase metabolic process;0.0184749306540567!GO:0044433;cytoplasmic vesicle part;0.0188575804074396!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0190724188777177!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0190724188777177!GO:0045045;secretory pathway;0.0191509651936276!GO:0007040;lysosome organization and biogenesis;0.0191509651936276!GO:0000209;protein polyubiquitination;0.0195516563295754!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0201914103026764!GO:0007160;cell-matrix adhesion;0.0201914103026764!GO:0030125;clathrin vesicle coat;0.0205901967205329!GO:0030665;clathrin coated vesicle membrane;0.0205901967205329!GO:0007041;lysosomal transport;0.0206709304505952!GO:0055003;cardiac myofibril assembly;0.0212269812834386!GO:0055013;cardiac muscle cell development;0.0212269812834386!GO:0006611;protein export from nucleus;0.0212478122712836!GO:0046870;cadmium ion binding;0.0212724319740973!GO:0030032;lamellipodium biogenesis;0.0213118833033217!GO:0019206;nucleoside kinase activity;0.0216502127389044!GO:0005669;transcription factor TFIID complex;0.0216726424685982!GO:0006740;NADPH regeneration;0.0217259852752291!GO:0006098;pentose-phosphate shunt;0.0217259852752291!GO:0005801;cis-Golgi network;0.0220139129871269!GO:0044437;vacuolar part;0.022251930869048!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0223446876934629!GO:0006144;purine base metabolic process;0.0227039807365046!GO:0007033;vacuole organization and biogenesis;0.0227039807365046!GO:0031589;cell-substrate adhesion;0.0227039807365046!GO:0035035;histone acetyltransferase binding;0.0228523619640341!GO:0031529;ruffle organization and biogenesis;0.023987179742181!GO:0032508;DNA duplex unwinding;0.024106095423443!GO:0032392;DNA geometric change;0.024106095423443!GO:0031371;ubiquitin conjugating enzyme complex;0.0241150605081834!GO:0006892;post-Golgi vesicle-mediated transport;0.0247665020939436!GO:0031123;RNA 3'-end processing;0.0248200841079157!GO:0016272;prefoldin complex;0.0252681698009925!GO:0006007;glucose catabolic process;0.0256329527698408!GO:0051098;regulation of binding;0.0257627367435349!GO:0007017;microtubule-based process;0.0258178723645098!GO:0005765;lysosomal membrane;0.0260739078464048!GO:0050662;coenzyme binding;0.0262224323576316!GO:0006289;nucleotide-excision repair;0.0264798109722458!GO:0006401;RNA catabolic process;0.0266279140528623!GO:0006672;ceramide metabolic process;0.0272229691657066!GO:0051101;regulation of DNA binding;0.0277728508573784!GO:0006778;porphyrin metabolic process;0.0282988799517771!GO:0033013;tetrapyrrole metabolic process;0.0282988799517771!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0283962462770033!GO:0012506;vesicle membrane;0.0287484780359619!GO:0043130;ubiquitin binding;0.0289896073922017!GO:0032182;small conjugating protein binding;0.0289896073922017!GO:0003923;GPI-anchor transamidase activity;0.0291772899739207!GO:0016255;attachment of GPI anchor to protein;0.0291772899739207!GO:0042765;GPI-anchor transamidase complex;0.0291772899739207!GO:0006275;regulation of DNA replication;0.0292881694632298!GO:0000792;heterochromatin;0.0294627970022462!GO:0046519;sphingoid metabolic process;0.0298805877446785!GO:0000910;cytokinesis;0.0299833775063292!GO:0004527;exonuclease activity;0.0304931922694765!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0304931922694765!GO:0006607;NLS-bearing substrate import into nucleus;0.0313616341406133!GO:0006405;RNA export from nucleus;0.031925617846918!GO:0022415;viral reproductive process;0.031982626095041!GO:0000786;nucleosome;0.0321689309312431!GO:0004287;prolyl oligopeptidase activity;0.0321764168158895!GO:0051539;4 iron, 4 sulfur cluster binding;0.0324903461829315!GO:0033559;unsaturated fatty acid metabolic process;0.0324922794778643!GO:0006636;unsaturated fatty acid biosynthetic process;0.0324922794778643!GO:0005784;translocon complex;0.0324922794778643!GO:0022408;negative regulation of cell-cell adhesion;0.0326596574722937!GO:0006220;pyrimidine nucleotide metabolic process;0.032876005419377!GO:0000922;spindle pole;0.0330585043784575!GO:0006378;mRNA polyadenylation;0.033130333609885!GO:0030508;thiol-disulfide exchange intermediate activity;0.0332387331895764!GO:0006268;DNA unwinding during replication;0.033269811579209!GO:0005811;lipid particle;0.0333561337055729!GO:0000152;nuclear ubiquitin ligase complex;0.0336796744144449!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0338707651286029!GO:0033043;regulation of organelle organization and biogenesis;0.0338707651286029!GO:0005856;cytoskeleton;0.0340920577696678!GO:0006643;membrane lipid metabolic process;0.0341093443535645!GO:0004003;ATP-dependent DNA helicase activity;0.0350447228323546!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0353188490278769!GO:0033673;negative regulation of kinase activity;0.0355010240766446!GO:0006469;negative regulation of protein kinase activity;0.0355010240766446!GO:0042168;heme metabolic process;0.0360418423519065!GO:0045792;negative regulation of cell size;0.0364809313394598!GO:0030119;AP-type membrane coat adaptor complex;0.0365741957230385!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0369106422521011!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0369106422521011!GO:0022406;membrane docking;0.0373318624913307!GO:0048278;vesicle docking;0.0373318624913307!GO:0031543;peptidyl-proline dioxygenase activity;0.0373318624913307!GO:0007030;Golgi organization and biogenesis;0.0374530139471781!GO:0008243;plasminogen activator activity;0.0378053836935539!GO:0006354;RNA elongation;0.0378686086210233!GO:0008154;actin polymerization and/or depolymerization;0.0382992524249982!GO:0048468;cell development;0.0383786235911893!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0388195537096286!GO:0030041;actin filament polymerization;0.0391796079529009!GO:0007021;tubulin folding;0.0394631302245107!GO:0006897;endocytosis;0.0395175499596214!GO:0010324;membrane invagination;0.0395175499596214!GO:0030911;TPR domain binding;0.0409695147967151!GO:0008601;protein phosphatase type 2A regulator activity;0.0410772679044044!GO:0000159;protein phosphatase type 2A complex;0.0412551949826056!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0414353140793307!GO:0009116;nucleoside metabolic process;0.0416193973720756!GO:0008632;apoptotic program;0.0417078017589668!GO:0006635;fatty acid beta-oxidation;0.0418985158968114!GO:0016791;phosphoric monoester hydrolase activity;0.042678470745417!GO:0030308;negative regulation of cell growth;0.042678470745417!GO:0006979;response to oxidative stress;0.0429142457006406!GO:0004674;protein serine/threonine kinase activity;0.0429142457006406!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0430124081261905!GO:0045941;positive regulation of transcription;0.0443354928633205!GO:0051348;negative regulation of transferase activity;0.0467928550095218!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0480726126315509!GO:0030522;intracellular receptor-mediated signaling pathway;0.0481511700733937!GO:0030140;trans-Golgi network transport vesicle;0.0482262554394409!GO:0048144;fibroblast proliferation;0.0490826673633436!GO:0048145;regulation of fibroblast proliferation;0.0490826673633436!GO:0006518;peptide metabolic process;0.0494213126283552!GO:0032200;telomere organization and biogenesis;0.0494583687374405!GO:0000723;telomere maintenance;0.0494583687374405 | |||
|sample_id=11398 | |sample_id=11398 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=NKX3-1:1.51399158813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.25822552801;FOXL1:1.24465115806;POU3F1..4:1.23895149062;ZNF238:1.22364884633;GZF1:1.18765569896;EN1,2:1.09164622462;HIF1A:1.02430031191;PAX1,9:1.01769076236;NKX2-2,8:0.989150197949;NR3C1:0.986165707825;TFCP2:0.945693044934;LEF1_TCF7_TCF7L1,2:0.931877966391;TEAD1:0.916292443453;TFDP1:0.866842402162;TAL1_TCF{3,4,12}:0.848242328388;SRF:0.844420377634;TBX4,5:0.835904692061;HSF1,2:0.834728149039;TFAP4:0.825567315194;MAFB:0.818535800106;GFI1B:0.797297627127;ELK1,4_GABP{A,B1}:0.765219060908;GTF2A1,2:0.763826787891;GFI1:0.754618623904;POU1F1:0.72067321283;TLX1..3_NFIC{dimer}:0.700265632099;RXR{A,B,G}:0.689660276381;ADNP_IRX_SIX_ZHX:0.687521688636;PAX5:0.687103616109;IKZF1:0.661021359989;NHLH1,2:0.646016808571;HOX{A4,D4}:0.613896278017;STAT1,3:0.59751016723;NRF1:0.597484631165;HBP1_HMGB_SSRP1_UBTF:0.586871646607;PRRX1,2:0.581955919353;GCM1,2:0.581148577182;T:0.580786660216;MTE{core}:0.575702886437;HMGA1,2:0.561525851441;MAZ:0.558926204573;ALX4:0.553355063488;ZNF143:0.549070531919;PDX1:0.544966766316;HES1:0.524236349262;MYBL2:0.52306830717;TBP:0.521017593925;EVI1:0.505061757658;MTF1:0.497780574439;XBP1:0.496518220928;E2F1..5:0.494442036817;SREBF1,2:0.487474710334;ZFP161:0.487259361541;SMAD1..7,9:0.48607892974;LHX3,4:0.485197040931;NKX3-2:0.48138993342;bHLH_family:0.479736047343;MEF2{A,B,C,D}:0.479453288149;NKX2-1,4:0.425624384961;TP53:0.395649645575;HOX{A5,B5}:0.391969215444;NFIX:0.386521064072;NFE2L1:0.365250466261;NFATC1..3:0.363187870681;PPARG:0.360583020759;SP1:0.334685104585;MYB:0.326805756196;SPZ1:0.312984341485;TFAP2{A,C}:0.301265095284;MYOD1:0.301120438957;NFY{A,B,C}:0.293366458691;ESR1:0.286505870156;ZNF384:0.279747565144;NANOG{mouse}:0.263635365051;NFE2L2:0.259202823761;BACH2:0.251159545568;NR1H4:0.242733513819;HLF:0.232738557876;MZF1:0.228873492205;TGIF1:0.209230420091;STAT5{A,B}:0.206272561789;FOXA2:0.206168223085;TFAP2B:0.20555420367;YY1:0.19973935892;FOS_FOS{B,L1}_JUN{B,D}:0.19427531993;UFEwm:0.191515283638;AR:0.179260990444;ALX1:0.162987015865;SOX5:0.158934225994;HIC1:0.148092570604;KLF4:0.147526224761;ESRRA:0.145981769709;ONECUT1,2:0.122609543781;HAND1,2:0.104735610559;FOXN1:0.102403356104;FOXM1:0.101118588979;SOX17:0.0911920870771;ATF6:0.0890775123381;XCPE1{core}:0.0823776599769;HNF1A:0.0785347788941;NR6A1:0.078277376754;GTF2I:0.0706080903708;DMAP1_NCOR{1,2}_SMARC:0.0443297271073;EBF1:0.0387599722508;ELF1,2,4:0.0328683185383;CREB1:0.02685336256;EGR1..3:0.0153032179673;RUNX1..3:0.00747433230611;DBP:-0.0100543456279;AHR_ARNT_ARNT2:-0.01612986062;ZBTB6:-0.0168266477065;ZNF148:-0.0248600245154;NFE2:-0.0264216232351;MED-1{core}:-0.0284726823531;HMX1:-0.0344989072039;RREB1:-0.0355277243451;TLX2:-0.0414718830269;ARID5B:-0.0490035431468;FOSL2:-0.0562555711144;PRDM1:-0.0602240555965;FOXO1,3,4:-0.0711097379671;CEBPA,B_DDIT3:-0.0829015959049;GATA4:-0.0969136716128;HOX{A6,A7,B6,B7}:-0.115623551512;PAX2:-0.132997699541;NFIL3:-0.137041119641;CDC5L:-0.142591007477;PAX8:-0.144358013925;ZBTB16:-0.15602682525;MYFfamily:-0.160732444833;JUN:-0.161003413481;SOX2:-0.179659917371;LMO2:-0.191988643535;SOX{8,9,10}:-0.193700541264;GLI1..3:-0.200672811213;CRX:-0.206900881634;RFX1:-0.207203341672;FOXD3:-0.226858987346;IKZF2:-0.229974227458;FOXP3:-0.274155606795;POU6F1:-0.274375756878;NANOG:-0.275338434012;ZNF423:-0.276668645696;HNF4A_NR2F1,2:-0.292014953348;EP300:-0.295918497776;OCT4_SOX2{dimer}:-0.306714116673;PATZ1:-0.33496638518;IRF7:-0.352713465245;ETS1,2:-0.365818642845;SPI1:-0.373175116037;SPIB:-0.377225922128;PITX1..3:-0.380713435831;PAX3,7:-0.384506328615;ATF4:-0.39931047738;NR5A1,2:-0.403506461588;NFKB1_REL_RELA:-0.410921670239;REST:-0.414177437003;STAT2,4,6:-0.414445718988;FOX{D1,D2}:-0.454035313528;ATF5_CREB3:-0.506803345476;BREu{core}:-0.511114880981;IRF1,2:-0.536111180273;NKX6-1,2:-0.539873146802;GATA6:-0.540331550731;NKX2-3_NKX2-5:-0.549583001162;BPTF:-0.59790953486;TEF:-0.623287432486;CUX2:-0.626104324113;PAX6:-0.63659357983;ZIC1..3:-0.644160309637;FOXP1:-0.647932914189;PAX4:-0.662043217982;RBPJ:-0.677630826668;RFX2..5_RFXANK_RFXAP:-0.688067493264;AIRE:-0.690175064257;ATF2:-0.710293522359;RXRA_VDR{dimer}:-0.737475127721;PBX1:-0.754813749719;POU2F1..3:-0.762322807827;FOXQ1:-0.769273113421;TOPORS:-0.77766713838;POU5F1:-0.793767716736;CDX1,2,4:-0.822948597187;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.845927449585;SNAI1..3:-0.90789975114;FOX{I1,J2}:-0.926225853877;VSX1,2:-0.940172371319;ZEB1:-1.06536611335;RORA:-1.20288787031;HOXA9_MEIS1:-1.36468921224;FOX{F1,F2,J1}:-1.46546567122 | |top_motifs=NKX3-1:1.51399158813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.25822552801;FOXL1:1.24465115806;POU3F1..4:1.23895149062;ZNF238:1.22364884633;GZF1:1.18765569896;EN1,2:1.09164622462;HIF1A:1.02430031191;PAX1,9:1.01769076236;NKX2-2,8:0.989150197949;NR3C1:0.986165707825;TFCP2:0.945693044934;LEF1_TCF7_TCF7L1,2:0.931877966391;TEAD1:0.916292443453;TFDP1:0.866842402162;TAL1_TCF{3,4,12}:0.848242328388;SRF:0.844420377634;TBX4,5:0.835904692061;HSF1,2:0.834728149039;TFAP4:0.825567315194;MAFB:0.818535800106;GFI1B:0.797297627127;ELK1,4_GABP{A,B1}:0.765219060908;GTF2A1,2:0.763826787891;GFI1:0.754618623904;POU1F1:0.72067321283;TLX1..3_NFIC{dimer}:0.700265632099;RXR{A,B,G}:0.689660276381;ADNP_IRX_SIX_ZHX:0.687521688636;PAX5:0.687103616109;IKZF1:0.661021359989;NHLH1,2:0.646016808571;HOX{A4,D4}:0.613896278017;STAT1,3:0.59751016723;NRF1:0.597484631165;HBP1_HMGB_SSRP1_UBTF:0.586871646607;PRRX1,2:0.581955919353;GCM1,2:0.581148577182;T:0.580786660216;MTE{core}:0.575702886437;HMGA1,2:0.561525851441;MAZ:0.558926204573;ALX4:0.553355063488;ZNF143:0.549070531919;PDX1:0.544966766316;HES1:0.524236349262;MYBL2:0.52306830717;TBP:0.521017593925;EVI1:0.505061757658;MTF1:0.497780574439;XBP1:0.496518220928;E2F1..5:0.494442036817;SREBF1,2:0.487474710334;ZFP161:0.487259361541;SMAD1..7,9:0.48607892974;LHX3,4:0.485197040931;NKX3-2:0.48138993342;bHLH_family:0.479736047343;MEF2{A,B,C,D}:0.479453288149;NKX2-1,4:0.425624384961;TP53:0.395649645575;HOX{A5,B5}:0.391969215444;NFIX:0.386521064072;NFE2L1:0.365250466261;NFATC1..3:0.363187870681;PPARG:0.360583020759;SP1:0.334685104585;MYB:0.326805756196;SPZ1:0.312984341485;TFAP2{A,C}:0.301265095284;MYOD1:0.301120438957;NFY{A,B,C}:0.293366458691;ESR1:0.286505870156;ZNF384:0.279747565144;NANOG{mouse}:0.263635365051;NFE2L2:0.259202823761;BACH2:0.251159545568;NR1H4:0.242733513819;HLF:0.232738557876;MZF1:0.228873492205;TGIF1:0.209230420091;STAT5{A,B}:0.206272561789;FOXA2:0.206168223085;TFAP2B:0.20555420367;YY1:0.19973935892;FOS_FOS{B,L1}_JUN{B,D}:0.19427531993;UFEwm:0.191515283638;AR:0.179260990444;ALX1:0.162987015865;SOX5:0.158934225994;HIC1:0.148092570604;KLF4:0.147526224761;ESRRA:0.145981769709;ONECUT1,2:0.122609543781;HAND1,2:0.104735610559;FOXN1:0.102403356104;FOXM1:0.101118588979;SOX17:0.0911920870771;ATF6:0.0890775123381;XCPE1{core}:0.0823776599769;HNF1A:0.0785347788941;NR6A1:0.078277376754;GTF2I:0.0706080903708;DMAP1_NCOR{1,2}_SMARC:0.0443297271073;EBF1:0.0387599722508;ELF1,2,4:0.0328683185383;CREB1:0.02685336256;EGR1..3:0.0153032179673;RUNX1..3:0.00747433230611;DBP:-0.0100543456279;AHR_ARNT_ARNT2:-0.01612986062;ZBTB6:-0.0168266477065;ZNF148:-0.0248600245154;NFE2:-0.0264216232351;MED-1{core}:-0.0284726823531;HMX1:-0.0344989072039;RREB1:-0.0355277243451;TLX2:-0.0414718830269;ARID5B:-0.0490035431468;FOSL2:-0.0562555711144;PRDM1:-0.0602240555965;FOXO1,3,4:-0.0711097379671;CEBPA,B_DDIT3:-0.0829015959049;GATA4:-0.0969136716128;HOX{A6,A7,B6,B7}:-0.115623551512;PAX2:-0.132997699541;NFIL3:-0.137041119641;CDC5L:-0.142591007477;PAX8:-0.144358013925;ZBTB16:-0.15602682525;MYFfamily:-0.160732444833;JUN:-0.161003413481;SOX2:-0.179659917371;LMO2:-0.191988643535;SOX{8,9,10}:-0.193700541264;GLI1..3:-0.200672811213;CRX:-0.206900881634;RFX1:-0.207203341672;FOXD3:-0.226858987346;IKZF2:-0.229974227458;FOXP3:-0.274155606795;POU6F1:-0.274375756878;NANOG:-0.275338434012;ZNF423:-0.276668645696;HNF4A_NR2F1,2:-0.292014953348;EP300:-0.295918497776;OCT4_SOX2{dimer}:-0.306714116673;PATZ1:-0.33496638518;IRF7:-0.352713465245;ETS1,2:-0.365818642845;SPI1:-0.373175116037;SPIB:-0.377225922128;PITX1..3:-0.380713435831;PAX3,7:-0.384506328615;ATF4:-0.39931047738;NR5A1,2:-0.403506461588;NFKB1_REL_RELA:-0.410921670239;REST:-0.414177437003;STAT2,4,6:-0.414445718988;FOX{D1,D2}:-0.454035313528;ATF5_CREB3:-0.506803345476;BREu{core}:-0.511114880981;IRF1,2:-0.536111180273;NKX6-1,2:-0.539873146802;GATA6:-0.540331550731;NKX2-3_NKX2-5:-0.549583001162;BPTF:-0.59790953486;TEF:-0.623287432486;CUX2:-0.626104324113;PAX6:-0.63659357983;ZIC1..3:-0.644160309637;FOXP1:-0.647932914189;PAX4:-0.662043217982;RBPJ:-0.677630826668;RFX2..5_RFXANK_RFXAP:-0.688067493264;AIRE:-0.690175064257;ATF2:-0.710293522359;RXRA_VDR{dimer}:-0.737475127721;PBX1:-0.754813749719;POU2F1..3:-0.762322807827;FOXQ1:-0.769273113421;TOPORS:-0.77766713838;POU5F1:-0.793767716736;CDX1,2,4:-0.822948597187;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.845927449585;SNAI1..3:-0.90789975114;FOX{I1,J2}:-0.926225853877;VSX1,2:-0.940172371319;ZEB1:-1.06536611335;RORA:-1.20288787031;HOXA9_MEIS1:-1.36468921224;FOX{F1,F2,J1}:-1.46546567122 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11398-118D3;search_select_hide=table117:FF:11398-118D3 | |||
}} | }} | ||
Latest revision as of 17:58, 4 June 2020
| Name: | Myoblast, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11908 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11908
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11908
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.255 |
| 10 | 10 | 0.453 |
| 100 | 100 | 0.47 |
| 101 | 101 | 0.204 |
| 102 | 102 | 0.601 |
| 103 | 103 | 0.814 |
| 104 | 104 | 0.927 |
| 105 | 105 | 0.148 |
| 106 | 106 | 0.00327 |
| 107 | 107 | 0.757 |
| 108 | 108 | 0.306 |
| 109 | 109 | 0.686 |
| 11 | 11 | 0.122 |
| 110 | 110 | 0.412 |
| 111 | 111 | 0.0629 |
| 112 | 112 | 0.0319 |
| 113 | 113 | 0.325 |
| 114 | 114 | 0.265 |
| 115 | 115 | 0.179 |
| 116 | 116 | 0.544 |
| 117 | 117 | 0.434 |
| 118 | 118 | 0.388 |
| 119 | 119 | 0.348 |
| 12 | 12 | 0.921 |
| 120 | 120 | 0.477 |
| 121 | 121 | 0.463 |
| 122 | 122 | 0.0701 |
| 123 | 123 | 1.18242e-4 |
| 124 | 124 | 0.0146 |
| 125 | 125 | 0.818 |
| 126 | 126 | 0.859 |
| 127 | 127 | 0.829 |
| 128 | 128 | 0.111 |
| 129 | 129 | 0.699 |
| 13 | 13 | 0.587 |
| 130 | 130 | 0.0269 |
| 131 | 131 | 0.45 |
| 132 | 132 | 0.753 |
| 133 | 133 | 0.196 |
| 134 | 134 | 0.171 |
| 135 | 135 | 0.423 |
| 136 | 136 | 0.357 |
| 137 | 137 | 0.802 |
| 138 | 138 | 0.0667 |
| 139 | 139 | 0.0123 |
| 14 | 14 | 0.437 |
| 140 | 140 | 0.00903 |
| 141 | 141 | 0.081 |
| 142 | 142 | 0.967 |
| 143 | 143 | 0.264 |
| 144 | 144 | 0.904 |
| 145 | 145 | 0.442 |
| 146 | 146 | 0.714 |
| 147 | 147 | 0.471 |
| 148 | 148 | 0.146 |
| 149 | 149 | 0.941 |
| 15 | 15 | 0.658 |
| 150 | 150 | 0.453 |
| 151 | 151 | 0.558 |
| 152 | 152 | 0.671 |
| 153 | 153 | 0.887 |
| 154 | 154 | 0.723 |
| 155 | 155 | 0.00563 |
| 156 | 156 | 0.538 |
| 157 | 157 | 0.077 |
| 158 | 158 | 0.0209 |
| 159 | 159 | 0.328 |
| 16 | 16 | 0.922 |
| 160 | 160 | 0.0259 |
| 161 | 161 | 0.012 |
| 162 | 162 | 0.969 |
| 163 | 163 | 0.312 |
| 164 | 164 | 0.18 |
| 165 | 165 | 0.132 |
| 166 | 166 | 0.641 |
| 167 | 167 | 0.312 |
| 168 | 168 | 0.863 |
| 169 | 169 | 0.39 |
| 17 | 17 | 0.433 |
| 18 | 18 | 0.208 |
| 19 | 19 | 0.793 |
| 2 | 2 | 0.436 |
| 20 | 20 | 0.719 |
| 21 | 21 | 0.991 |
| 22 | 22 | 0.853 |
| 23 | 23 | 0.344 |
| 24 | 24 | 0.999 |
| 25 | 25 | 0.701 |
| 26 | 26 | 0.195 |
| 27 | 27 | 0.465 |
| 28 | 28 | 0.595 |
| 29 | 29 | 0.489 |
| 3 | 3 | 0.275 |
| 30 | 30 | 0.927 |
| 31 | 31 | 0.846 |
| 32 | 32 | 0.812 |
| 33 | 33 | 0.692 |
| 34 | 34 | 0.251 |
| 35 | 35 | 0.0296 |
| 36 | 36 | 0.004 |
| 37 | 37 | 0.443 |
| 38 | 38 | 0.331 |
| 39 | 39 | 0.453 |
| 4 | 4 | 0.433 |
| 40 | 40 | 0.134 |
| 41 | 41 | 0.43 |
| 42 | 42 | 0.161 |
| 43 | 43 | 0.398 |
| 44 | 44 | 0.367 |
| 45 | 45 | 0.307 |
| 46 | 46 | 0.222 |
| 47 | 47 | 0.123 |
| 48 | 48 | 0.278 |
| 49 | 49 | 0.0632 |
| 5 | 5 | 0.747 |
| 50 | 50 | 0.639 |
| 51 | 51 | 0.424 |
| 52 | 52 | 0.652 |
| 53 | 53 | 0.173 |
| 54 | 54 | 0.559 |
| 55 | 55 | 0.524 |
| 56 | 56 | 0.741 |
| 57 | 57 | 0.486 |
| 58 | 58 | 0.172 |
| 59 | 59 | 0.0792 |
| 6 | 6 | 0.958 |
| 60 | 60 | 0.0768 |
| 61 | 61 | 0.755 |
| 62 | 62 | 0.0939 |
| 63 | 63 | 0.596 |
| 64 | 64 | 0.0527 |
| 65 | 65 | 0.103 |
| 66 | 66 | 0.568 |
| 67 | 67 | 0.776 |
| 68 | 68 | 0.352 |
| 69 | 69 | 0.817 |
| 7 | 7 | 0.501 |
| 70 | 70 | 0.0434 |
| 71 | 71 | 0.213 |
| 72 | 72 | 0.525 |
| 73 | 73 | 0.549 |
| 74 | 74 | 0.11 |
| 75 | 75 | 0.223 |
| 76 | 76 | 0.392 |
| 77 | 77 | 0.797 |
| 78 | 78 | 0.619 |
| 79 | 79 | 0.968 |
| 8 | 8 | 0.333 |
| 80 | 80 | 0.41 |
| 81 | 81 | 0.144 |
| 82 | 82 | 0.0878 |
| 83 | 83 | 0.46 |
| 84 | 84 | 0.748 |
| 85 | 85 | 0.149 |
| 86 | 86 | 0.999 |
| 87 | 87 | 0.101 |
| 88 | 88 | 0.188 |
| 89 | 89 | 0.526 |
| 9 | 9 | 0.759 |
| 90 | 90 | 0.581 |
| 91 | 91 | 0.0516 |
| 92 | 92 | 0.662 |
| 93 | 93 | 0.907 |
| 94 | 94 | 0.421 |
| 95 | 95 | 0.593 |
| 96 | 96 | 0.881 |
| 97 | 97 | 0.723 |
| 98 | 98 | 0.105 |
| 99 | 99 | 0.47 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11908
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000515 (skeletal muscle myoblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000164 (human skeletal muscle myoblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)
