FF:11406-118E2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005139 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005139 | ||
|accession_numbers=CAGE;DRX008466;DRR009338;DRZ000763;DRZ002148;DRZ012113;DRZ013498 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037246;DRR041612;DRZ007254 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000166 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor3.CNhs12016.11406-118E2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11406-118E2 | |id=FF:11406-118E2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000166 | ||
|is_obsolete= | |||
|library_id=CNhs12016 | |||
|library_id_phase_based=2:CNhs12016 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11406 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GGTAGC.11406 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11406 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GGTAGC.11406 | |||
|name=Small Airway Epithelial Cells, donor3 | |name=Small Airway Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12016,LSID837,release011,COMPLETED | |profile_hcage=CNhs12016,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0174460625398162,0.0800184682686384,0.331555168580955,-0.0141014890286932,0,0,0,0,0,0,0,0,0.115102153805393,0,0.30353683589945,0,0,0.29705545155082,0,0,0,0.172578349865749,0,0.0171442575373354,0,0,0.014605697383257,0,0,0,0,0,0,0,0,0,0,0.400946485218329,0,0.335162144972402,0,0,0,0.0418495518922339,0,0,0,0,0.0157942130214849,0,0,0,0,0,0.0320801221556276,0.0418495518922339,-0.0551428093503712,0,0,-0.055494075320863,0,0,0,0,0,0,0,0,0.147562287162119,0,0,0,0,0.0418495518922339,0,0,0,-0.0458597343224592,0,0,0,0,0,0.0418495518922339,0,0,0,0.0167910256350582,0.023923426203003,0.148825443963576,0,0.0418495518922339,0.0209247759461169,0,-0.0561857993454725,0.0741103831991734,0,0,0,0,0,0,0,0,0,0,0.191882780358584,0,0,0,0,0,0,0.0441908372557938,0.115102153805393,0,0,0.229013418506741,0.524994369989092,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0561857993454725,0,0,0.0418495518922339,0.0418495518922339,0,0,0,0.0418495518922339,0.0418495518922339,0,0,0.261414290326167,0,-0.326523931589889,0.0342489501027304,0.0209247759461169,0,-0.103618682097164,0,0,0,0,0,0,0.0418495518922339,0,0,0.431798997387717,0,-0.0504125515893149,0.0209247759461169,0,0,0,-0.0186252810838506,-0.157909943736288,0,-0.0455073006320265,0.189157259957598,0,0.0745822619456072,0,0,-0.0558950945750099,0,0.0266828033683786,-0.0827201683234173,0,0.394527891545487,0.123482773677833,0,0,0,0.471727938624806,0.573078892862606,0,0,0.018784579426381,-0.107568474979599,0,0,-0.349195029659401,0,0.310144241340935,0.0180361109519431,0,0.0057157887774073,0,0,0,0,0,0,0,0,0,0,0,0.217316695467489,-0.0458597343224592,0.031867869941621,0.0800184682686384,0.232514428188533,0.0827217685978128,0.388981702134755,0,0.0418495518922339,0.379012643831794,0.148424664164,0.053418257859303,0.226576958329115,0.0259872592722114,-0.0963882589189468,0.120455396591132,0.299772867655113,0.023923426203003,-0.0673833811025001,0.134863428593284,0.0800184682686384,-0.0064236547092068,-0.335894167214764,0.0733639713829189,0.125077034043549,0.0234046828013994,0.089320937198244,0.103282310437137,0.0418495518922339,0.0418495518922339,0.115102153805393,0.400880571068909,0.0418495518922339,0.340233849581389,0.0933581413880127,0.230546519459516,0.0606619962003174,0.141792390569598,0.220108926900882,-0.216967898054968,0.0580277825803451,-0.0393798122477341,0.0437693465403321,-0.281007893725445,0,0,0.11281458419833,0.0587733979270231,-0.0658664137884322,-0.181308002406219,0,0.305536043978926,0.109419831548834,0,-0.077608474238918,0.00431473236355173,0,0,0.0585330167059478,0.0418495518922339,0.115102153805393,0,0,0.0800184682686384,-0.404715348156115,-0.156357657583641,-0.0852932743934255,0,-0.0234342361567661,0.159607795767541,-0.0289840088043378,0,0.00544198901901405,-0.0244066689846032,0.206273512387776,0.175398039856274,0.0377800389031344,0.0458445556446557,0.345307661824554,0.0410107717519637,0.297650887927153,-0.0584468268118252,-0.0452681872909833,-0.00540661937438891,0.494723704507293,0.211192249041654,-0.0213461462640003,-0.0881268324752877,0.115102153805393,-0.123543518305305,-0.0847106253156639,0.124079055214567,-0.0318997106627677,0,0.0858485482308058,0,-0.433773242409694,0,-0.22286031482206,0.241887562992272,-0.18178785354572,0.0450029534444114,0.0168845884243293,0.128357758491703,1.0807177296547,0.099371022773045,0.244065805625199,0.0308948459004562,0.494754591204264,-0.00280479617252005,0.302436147319298,0.0097475906906925,-0.138989456679195,0,0.445075568015552,0,0.0800184682686384,0.308892500404247,0.182580602884472,0,-0.269714319910141,-0.158824452314149,-0.169697870422835,-0.0741215215427001,0.257501521034967,0,0.705427969957651,0.0553571013510912,0,0.51263205743018,0,-0.442019231332431,-0.253326341486756,-0.0227807101765417,0.275141301888304,0,0,0.000236326661026603,0,-0.0887559336971105,0,0,0.287939619998266,0.0893733551008337,0,0,0,0,0,0,0,0,0.0785750924980585,0,0.00212078818610596,0.0660521938429945,0.0461131550018811,0,0.128075358113133,0,0,0,0,0,0.052087476532335,0,0,0.618383044110809,-0.0048335532293532,0.134484105358546,0.109806822259218,0,0,0,0.0167910256350582,-0.123218093826085,0.115102153805393,-0.0518442382289933,0.0418495518922339,0.0400092341343192,0,0,-0.0442914378969774,0,0,0.0209247759461169,0.0209247759461169,-0.0158809051614301,-0.103808477258932,0,0,0,0.0682022981297084,0,0,0,0,0.489564917407328,0,0,0,0.0274485374616136,0.230706084208675,-0.0397323276546075,0.0187109014469787,-0.0855945400221288,0.103204885125185,0.859102383347548,0,0.30353683589945,-0.219497579897654,0,0.0437972097847987,-0.232394185061205,-0.0367650793579039,0.0800184682686384,0,0,0,0,0,0,0,0.186631972818573,0.0209247759461169,0,0.0418495518922339,0,0,0,0,0,0,0,0,0.119628455541029,0.0553382305036089,0,0,0,0,0.297530185127254,0,0,0.174009485002048,-0.055256705807123,0,0,0,0,0,0.147562287162119,0,0,-0.0210474777639944,0.191882780358584,0,0,0,0,-0.0551428093503712,0,0,0,0,-0.0700525299496203,0,0,0.590278578914968,0,0,0,0,0,0,0,0.0228812489749754,0,0,0,0,0,-0.0814695341432138,0.331555168580955,0,0.0418495518922339,0,0,0,0.0800184682686384,0,0.050011849937041,0,0.0418495518922339,0,0,0.0921170943819893,0,0,0,0.0427659023729628,0,0.0174460625398162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116257214094266,0,0,0,-0.247302785606575,0,-0.172105362167517,0,0,0,0.0532994084081975,0,0,0,0,0,0,-0.0104156480824101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115102153805393,0,0,0,0,0,0,-0.0139332678589714,0,0,0,0,0,0,0,0.0171442575373354,0,0,0.0242244042937406,0,0,0,0,0.177764092626202,0,0.354838563448672,0.202047593337621,0.0522363862680116,0,0,0.0418495518922339,0.0745057079649653,0,0.0167975574529242,0.0418495518922339,0.0418495518922339,0.110986705207301,0,0,0,0,0,0,0,0,0.206001468090966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.29705545155082,0,0,0,0,0,0,0,0,0,0,0,0,0.0209247759461169,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 54: | Line 80: | ||
|rna_rin=10 | |rna_rin=10 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.18E+04 | ||
|rna_weight_ug=48.9 | |rna_weight_ug=48.9 | ||
|rnaseq_library_id=SRhi10014.GGTAGC | |||
|sample_age=50 | |sample_age=50 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CC-2547 | |sample_cell_catalog=CC-2547 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.69725437540109e-231!GO:0005737;cytoplasm;7.33987265492203e-189!GO:0043226;organelle;1.86947703136413e-179!GO:0043229;intracellular organelle;8.23815926603579e-179!GO:0043231;intracellular membrane-bound organelle;4.64940450169826e-168!GO:0043227;membrane-bound organelle;7.54979104391736e-168!GO:0044444;cytoplasmic part;7.116862867929e-122!GO:0044422;organelle part;4.22076091708296e-115!GO:0044446;intracellular organelle part;1.06045056642113e-113!GO:0044238;primary metabolic process;4.7833667833353e-80!GO:0044237;cellular metabolic process;6.3772013645175e-80!GO:0005515;protein binding;1.61677498219024e-77!GO:0043170;macromolecule metabolic process;3.52814710252093e-76!GO:0032991;macromolecular complex;5.15217947405232e-74!GO:0030529;ribonucleoprotein complex;6.4418059982954e-70!GO:0005634;nucleus;8.86339652047188e-61!GO:0043233;organelle lumen;1.89550393215893e-59!GO:0031974;membrane-enclosed lumen;1.89550393215893e-59!GO:0003723;RNA binding;2.57412838164738e-59!GO:0044428;nuclear part;1.5404788093795e-54!GO:0019538;protein metabolic process;2.53264739018287e-54!GO:0031090;organelle membrane;4.23615244785206e-51!GO:0015031;protein transport;2.58739496931992e-48!GO:0033036;macromolecule localization;4.32977212525268e-48!GO:0044260;cellular macromolecule metabolic process;6.5314773438012e-48!GO:0044267;cellular protein metabolic process;8.69985759753895e-48!GO:0005739;mitochondrion;1.23826296751802e-47!GO:0008104;protein localization;5.46281429023719e-45!GO:0045184;establishment of protein localization;6.64798468060506e-45!GO:0005840;ribosome;2.98520160410632e-44!GO:0006412;translation;4.7345766755118e-44!GO:0043283;biopolymer metabolic process;3.33102166511303e-43!GO:0016043;cellular component organization and biogenesis;2.85852581319014e-42!GO:0010467;gene expression;7.24926501743713e-40!GO:0005829;cytosol;1.94705082417659e-38!GO:0003735;structural constituent of ribosome;2.00884748318828e-38!GO:0006396;RNA processing;3.99430455131115e-38!GO:0031981;nuclear lumen;9.88920018025144e-37!GO:0043234;protein complex;3.96252468590849e-36!GO:0009058;biosynthetic process;6.09118511791474e-36!GO:0009059;macromolecule biosynthetic process;2.99301561251209e-35!GO:0046907;intracellular transport;1.67297577413885e-34!GO:0033279;ribosomal subunit;2.7121680838732e-34!GO:0044249;cellular biosynthetic process;2.5417509813277e-33!GO:0044429;mitochondrial part;3.38512324494408e-32!GO:0016071;mRNA metabolic process;1.572370749636e-31!GO:0006886;intracellular protein transport;8.67138229819772e-31!GO:0031967;organelle envelope;6.54410805024448e-30!GO:0031975;envelope;1.18330707884106e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.82698751036142e-29!GO:0065003;macromolecular complex assembly;1.11026581123932e-28!GO:0008380;RNA splicing;1.40402963312426e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.68509621838323e-26!GO:0006397;mRNA processing;9.86833279191586e-26!GO:0022607;cellular component assembly;1.81433337377417e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.19155358630625e-25!GO:0043228;non-membrane-bound organelle;4.48288049817029e-25!GO:0043232;intracellular non-membrane-bound organelle;4.48288049817029e-25!GO:0012505;endomembrane system;4.60706424456986e-25!GO:0005654;nucleoplasm;1.52332098079405e-23!GO:0006996;organelle organization and biogenesis;7.87737834545467e-23!GO:0005783;endoplasmic reticulum;1.52144781888444e-22!GO:0051641;cellular localization;1.06867912933425e-21!GO:0051649;establishment of cellular localization;1.10447831456938e-21!GO:0005794;Golgi apparatus;1.64466957185683e-21!GO:0005740;mitochondrial envelope;2.58981064002261e-21!GO:0044445;cytosolic part;4.35081140851816e-21!GO:0005681;spliceosome;6.84915169965558e-20!GO:0006457;protein folding;8.35958294058974e-20!GO:0044451;nucleoplasm part;1.26083337839189e-19!GO:0031966;mitochondrial membrane;1.63999529359903e-19!GO:0006512;ubiquitin cycle;4.68785633348411e-19!GO:0048770;pigment granule;7.34605650582559e-19!GO:0042470;melanosome;7.34605650582559e-19!GO:0019866;organelle inner membrane;1.32217768390641e-18!GO:0016070;RNA metabolic process;1.41125771575916e-18!GO:0044432;endoplasmic reticulum part;3.19270549217146e-18!GO:0008134;transcription factor binding;3.4293420232867e-18!GO:0015935;small ribosomal subunit;5.71836706219127e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.19592284166313e-17!GO:0006119;oxidative phosphorylation;1.20245001296587e-17!GO:0043412;biopolymer modification;1.31884583963681e-17!GO:0003676;nucleic acid binding;1.44082528691844e-17!GO:0043285;biopolymer catabolic process;1.46683415487774e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.64682406827183e-17!GO:0016874;ligase activity;1.64682406827183e-17!GO:0019941;modification-dependent protein catabolic process;2.08773885868447e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.08773885868447e-17!GO:0015934;large ribosomal subunit;2.30268810398519e-17!GO:0022618;protein-RNA complex assembly;2.30907198327914e-17!GO:0005743;mitochondrial inner membrane;2.75252846322435e-17!GO:0044257;cellular protein catabolic process;3.29420920899036e-17!GO:0044265;cellular macromolecule catabolic process;7.89006702651463e-17!GO:0000166;nucleotide binding;1.27126625581819e-16!GO:0006464;protein modification process;1.28814184796287e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.21262126784175e-16!GO:0016462;pyrophosphatase activity;4.21262126784175e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;5.8432393163952e-16!GO:0030163;protein catabolic process;6.12005958161431e-16!GO:0006605;protein targeting;1.03745564514226e-15!GO:0017111;nucleoside-triphosphatase activity;1.82987325382595e-15!GO:0012501;programmed cell death;2.27295115242075e-15!GO:0009057;macromolecule catabolic process;3.03184434265246e-15!GO:0005730;nucleolus;4.14639555823515e-15!GO:0006915;apoptosis;4.58913375428843e-15!GO:0048193;Golgi vesicle transport;5.6865286766595e-15!GO:0044455;mitochondrial membrane part;6.23073170095092e-15!GO:0016192;vesicle-mediated transport;9.14434796768786e-15!GO:0043687;post-translational protein modification;2.17523192690375e-14!GO:0008135;translation factor activity, nucleic acid binding;2.7214842348533e-14!GO:0031980;mitochondrial lumen;8.8748448639838e-14!GO:0005759;mitochondrial matrix;8.8748448639838e-14!GO:0008219;cell death;1.26844313489055e-13!GO:0016265;death;1.26844313489055e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.30153040847051e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.32527087508216e-13!GO:0051082;unfolded protein binding;1.96903051611623e-13!GO:0005789;endoplasmic reticulum membrane;2.0636828902311e-13!GO:0006259;DNA metabolic process;6.10378980466458e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.34273189191783e-13!GO:0044248;cellular catabolic process;1.51939102210979e-12!GO:0000502;proteasome complex (sensu Eukaryota);4.65651311701548e-12!GO:0005746;mitochondrial respiratory chain;4.90508659208632e-12!GO:0005761;mitochondrial ribosome;5.43572320375729e-12!GO:0000313;organellar ribosome;5.43572320375729e-12!GO:0003743;translation initiation factor activity;6.5885023807498e-12!GO:0003712;transcription cofactor activity;6.7434181127961e-12!GO:0006366;transcription from RNA polymerase II promoter;6.7434181127961e-12!GO:0006413;translational initiation;6.7434181127961e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.79502036622962e-12!GO:0032553;ribonucleotide binding;1.12493708291095e-11!GO:0032555;purine ribonucleotide binding;1.12493708291095e-11!GO:0051186;cofactor metabolic process;1.26180256391918e-11!GO:0050136;NADH dehydrogenase (quinone) activity;2.02513727941873e-11!GO:0003954;NADH dehydrogenase activity;2.02513727941873e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.02513727941873e-11!GO:0005768;endosome;3.72718158083178e-11!GO:0050794;regulation of cellular process;3.87312578108917e-11!GO:0017076;purine nucleotide binding;3.89728429863449e-11!GO:0048523;negative regulation of cellular process;6.3741559112317e-11!GO:0044431;Golgi apparatus part;6.99834986060396e-11!GO:0006446;regulation of translational initiation;8.11872045733209e-11!GO:0006913;nucleocytoplasmic transport;9.25853720764425e-11!GO:0006461;protein complex assembly;1.25671447874667e-10!GO:0016604;nuclear body;1.41731235169169e-10!GO:0051169;nuclear transport;1.74666462589375e-10!GO:0008639;small protein conjugating enzyme activity;2.20848603395165e-10!GO:0005793;ER-Golgi intermediate compartment;2.33087564056615e-10!GO:0043067;regulation of programmed cell death;3.55669593499814e-10!GO:0042981;regulation of apoptosis;3.55822938053611e-10!GO:0006732;coenzyme metabolic process;3.57110871678696e-10!GO:0008565;protein transporter activity;3.8861466151016e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.9995022095556e-10!GO:0004842;ubiquitin-protein ligase activity;4.41368869000336e-10!GO:0019787;small conjugating protein ligase activity;7.60145341113397e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.86451263911254e-10!GO:0000375;RNA splicing, via transesterification reactions;7.86451263911254e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.86451263911254e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.35361258811245e-10!GO:0042775;organelle ATP synthesis coupled electron transport;8.97830345885348e-10!GO:0042773;ATP synthesis coupled electron transport;8.97830345885348e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.17605297466362e-09!GO:0045271;respiratory chain complex I;1.17605297466362e-09!GO:0005747;mitochondrial respiratory chain complex I;1.17605297466362e-09!GO:0005635;nuclear envelope;1.62527488816706e-09!GO:0003924;GTPase activity;1.73306110956735e-09!GO:0048519;negative regulation of biological process;2.03485294094915e-09!GO:0009055;electron carrier activity;2.75786628351901e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.98674744686174e-09!GO:0042254;ribosome biogenesis and assembly;3.64314850223112e-09!GO:0016607;nuclear speck;6.69126729388222e-09!GO:0051246;regulation of protein metabolic process;6.69126729388222e-09!GO:0016881;acid-amino acid ligase activity;6.69126729388222e-09!GO:0048475;coated membrane;8.33818440223588e-09!GO:0030117;membrane coat;8.33818440223588e-09!GO:0030120;vesicle coat;9.0668453666872e-09!GO:0030662;coated vesicle membrane;9.0668453666872e-09!GO:0000139;Golgi membrane;9.92078758154292e-09!GO:0031965;nuclear membrane;9.96650804041252e-09!GO:0017038;protein import;1.11403711063488e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.60071918228478e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.58615530756606e-08!GO:0007049;cell cycle;3.04302035475194e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.33892498234317e-08!GO:0016023;cytoplasmic membrane-bound vesicle;3.46506707969335e-08!GO:0031988;membrane-bound vesicle;3.62234896027103e-08!GO:0005524;ATP binding;5.36904888063243e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.43116952575009e-08!GO:0006323;DNA packaging;6.54967957963754e-08!GO:0032559;adenyl ribonucleotide binding;7.45646029207579e-08!GO:0009056;catabolic process;9.20677242157503e-08!GO:0050789;regulation of biological process;1.32386131357235e-07!GO:0044453;nuclear membrane part;1.63543568658395e-07!GO:0016564;transcription repressor activity;1.70419679133251e-07!GO:0032446;protein modification by small protein conjugation;2.38425168961626e-07!GO:0031982;vesicle;2.72371278008747e-07!GO:0015986;ATP synthesis coupled proton transport;2.72371278008747e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.72371278008747e-07!GO:0030554;adenyl nucleotide binding;2.72677498814772e-07!GO:0051188;cofactor biosynthetic process;3.09001633109891e-07!GO:0007005;mitochondrion organization and biogenesis;3.09001633109891e-07!GO:0016567;protein ubiquitination;3.60838431496056e-07!GO:0043069;negative regulation of programmed cell death;3.98766946570428e-07!GO:0006793;phosphorus metabolic process;4.54801768119857e-07!GO:0006796;phosphate metabolic process;4.54801768119857e-07!GO:0031410;cytoplasmic vesicle;4.7707629446409e-07!GO:0005525;GTP binding;5.3160892397561e-07!GO:0019829;cation-transporting ATPase activity;6.07676163458475e-07!GO:0006163;purine nucleotide metabolic process;6.30055909587759e-07!GO:0043066;negative regulation of apoptosis;6.3451628754532e-07!GO:0006399;tRNA metabolic process;7.28698829834846e-07!GO:0003714;transcription corepressor activity;7.63745416110072e-07!GO:0009259;ribonucleotide metabolic process;8.39468044220353e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.51652617538273e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.51652617538273e-07!GO:0005773;vacuole;9.93753524190541e-07!GO:0019222;regulation of metabolic process;9.93753524190541e-07!GO:0009141;nucleoside triphosphate metabolic process;1.00219889733132e-06!GO:0009150;purine ribonucleotide metabolic process;1.01477627870482e-06!GO:0005643;nuclear pore;1.21779133303737e-06!GO:0044440;endosomal part;1.26873329527745e-06!GO:0010008;endosome membrane;1.26873329527745e-06!GO:0006164;purine nucleotide biosynthetic process;1.28165951037165e-06!GO:0006916;anti-apoptosis;1.34704362637857e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.34704362637857e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.34704362637857e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.49431536651089e-06!GO:0051276;chromosome organization and biogenesis;1.51682254855054e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.79237567042717e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.02149185388764e-06!GO:0006974;response to DNA damage stimulus;2.07437428623752e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.13179479078602e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.13179479078602e-06!GO:0031324;negative regulation of cellular metabolic process;2.18212903484305e-06!GO:0005798;Golgi-associated vesicle;2.25122677727654e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.46772505901869e-06!GO:0065002;intracellular protein transport across a membrane;2.81429137021338e-06!GO:0009108;coenzyme biosynthetic process;2.82789990079122e-06!GO:0007264;small GTPase mediated signal transduction;2.82789990079122e-06!GO:0005770;late endosome;2.86997252850127e-06!GO:0051170;nuclear import;2.91340409779947e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.04792804916268e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.04792804916268e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.04792804916268e-06!GO:0000074;regulation of progression through cell cycle;3.19729278163289e-06!GO:0005788;endoplasmic reticulum lumen;3.21879389744193e-06!GO:0051726;regulation of cell cycle;3.33398064156952e-06!GO:0006754;ATP biosynthetic process;3.55373552200863e-06!GO:0006753;nucleoside phosphate metabolic process;3.55373552200863e-06!GO:0009260;ribonucleotide biosynthetic process;3.58044198303615e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.24399980856432e-06!GO:0016887;ATPase activity;4.38973486318387e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.0390001100645e-06!GO:0006606;protein import into nucleus;5.06567761206108e-06!GO:0009892;negative regulation of metabolic process;5.06724120908985e-06!GO:0006752;group transfer coenzyme metabolic process;5.09792085264202e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.50474223288418e-06!GO:0045454;cell redox homeostasis;5.51995833724133e-06!GO:0031252;leading edge;5.77310232482688e-06!GO:0005667;transcription factor complex;6.02405139649098e-06!GO:0016568;chromatin modification;6.26034270079633e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.33498029443246e-06!GO:0043038;amino acid activation;7.09519738973546e-06!GO:0006418;tRNA aminoacylation for protein translation;7.09519738973546e-06!GO:0043039;tRNA aminoacylation;7.09519738973546e-06!GO:0046034;ATP metabolic process;7.40670447758528e-06!GO:0016072;rRNA metabolic process;7.40670447758528e-06!GO:0000323;lytic vacuole;7.63950904698237e-06!GO:0005764;lysosome;7.63950904698237e-06!GO:0042623;ATPase activity, coupled;7.90695033663086e-06!GO:0032561;guanyl ribonucleotide binding;8.17579688445152e-06!GO:0019001;guanyl nucleotide binding;8.17579688445152e-06!GO:0006364;rRNA processing;8.69953232649572e-06!GO:0050657;nucleic acid transport;9.18370096664986e-06!GO:0051236;establishment of RNA localization;9.18370096664986e-06!GO:0050658;RNA transport;9.18370096664986e-06!GO:0006403;RNA localization;9.23402114747676e-06!GO:0016469;proton-transporting two-sector ATPase complex;9.33868200749391e-06!GO:0045786;negative regulation of progression through cell cycle;9.4148721082036e-06!GO:0006613;cotranslational protein targeting to membrane;1.04159125264951e-05!GO:0048522;positive regulation of cellular process;1.40606220813454e-05!GO:0004386;helicase activity;1.49133912767935e-05!GO:0016310;phosphorylation;1.5919088915394e-05!GO:0008026;ATP-dependent helicase activity;2.00118237593658e-05!GO:0016740;transferase activity;2.19361020380887e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.42906555292278e-05!GO:0045259;proton-transporting ATP synthase complex;2.43558955344488e-05!GO:0007243;protein kinase cascade;2.52878702237071e-05!GO:0048471;perinuclear region of cytoplasm;2.58913554949669e-05!GO:0003713;transcription coactivator activity;2.62549601401158e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.72085745803817e-05!GO:0016481;negative regulation of transcription;3.03715369844521e-05!GO:0042802;identical protein binding;3.15295905659158e-05!GO:0046930;pore complex;3.24259375535509e-05!GO:0000151;ubiquitin ligase complex;3.24259375535509e-05!GO:0043623;cellular protein complex assembly;3.29842667833052e-05!GO:0009060;aerobic respiration;4.32451204303952e-05!GO:0019899;enzyme binding;4.58028114934341e-05!GO:0000245;spliceosome assembly;5.1801146478193e-05!GO:0016563;transcription activator activity;5.44959272661482e-05!GO:0005769;early endosome;5.72830716179323e-05!GO:0008654;phospholipid biosynthetic process;6.75011742243868e-05!GO:0008092;cytoskeletal protein binding;7.02189467688736e-05!GO:0043566;structure-specific DNA binding;8.02088197038704e-05!GO:0003724;RNA helicase activity;8.9161836379967e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.98043756979001e-05!GO:0022402;cell cycle process;9.58928433871936e-05!GO:0016787;hydrolase activity;9.94069709273895e-05!GO:0030118;clathrin coat;0.000105791078265844!GO:0005905;coated pit;0.00010726318223163!GO:0030867;rough endoplasmic reticulum membrane;0.000108247927938967!GO:0051427;hormone receptor binding;0.000110056152814152!GO:0016044;membrane organization and biogenesis;0.000110145019292777!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000129744418993597!GO:0006333;chromatin assembly or disassembly;0.000130961683310756!GO:0030036;actin cytoskeleton organization and biogenesis;0.000136372330959942!GO:0003697;single-stranded DNA binding;0.000141766377299062!GO:0016859;cis-trans isomerase activity;0.000146310791209003!GO:0005762;mitochondrial large ribosomal subunit;0.000147384272899043!GO:0000315;organellar large ribosomal subunit;0.000147384272899043!GO:0045333;cellular respiration;0.000147460019093103!GO:0065007;biological regulation;0.000149085414354379!GO:0033116;ER-Golgi intermediate compartment membrane;0.000150697351218138!GO:0006281;DNA repair;0.000155182565952797!GO:0051028;mRNA transport;0.000158415458257801!GO:0043065;positive regulation of apoptosis;0.000160480622957777!GO:0005839;proteasome core complex (sensu Eukaryota);0.000169269510709428!GO:0051789;response to protein stimulus;0.000173583146173876!GO:0006986;response to unfolded protein;0.000173583146173876!GO:0009719;response to endogenous stimulus;0.000187321898626916!GO:0043068;positive regulation of programmed cell death;0.000191693244126001!GO:0035257;nuclear hormone receptor binding;0.000195546096265833!GO:0019843;rRNA binding;0.000209973374072746!GO:0000785;chromatin;0.000222529912363306!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000225587291631328!GO:0065004;protein-DNA complex assembly;0.000235351400463763!GO:0048468;cell development;0.000249623246854976!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000252817027800755!GO:0030658;transport vesicle membrane;0.000273353434196727!GO:0030133;transport vesicle;0.000282494221437157!GO:0006612;protein targeting to membrane;0.000294587029405602!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00030307381913169!GO:0004576;oligosaccharyl transferase activity;0.000312180940142349!GO:0009967;positive regulation of signal transduction;0.000326726287204326!GO:0031323;regulation of cellular metabolic process;0.000340184755203284!GO:0043021;ribonucleoprotein binding;0.000348334881023846!GO:0016853;isomerase activity;0.000367485794171196!GO:0005048;signal sequence binding;0.000383566997327214!GO:0008250;oligosaccharyl transferase complex;0.000391634011623439!GO:0051168;nuclear export;0.000426437785113568!GO:0005885;Arp2/3 protein complex;0.000435781554996485!GO:0016197;endosome transport;0.000471708709952962!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000477097804624484!GO:0001726;ruffle;0.000478763000974125!GO:0030119;AP-type membrane coat adaptor complex;0.000575282445682876!GO:0045893;positive regulation of transcription, DNA-dependent;0.000581209175432554!GO:0006402;mRNA catabolic process;0.000661836062491011!GO:0016491;oxidoreductase activity;0.000682598655639961!GO:0051187;cofactor catabolic process;0.000725870002172831!GO:0051128;regulation of cellular component organization and biogenesis;0.000729263978030855!GO:0048518;positive regulation of biological process;0.000736366847149595!GO:0065009;regulation of a molecular function;0.000759245973937314!GO:0000314;organellar small ribosomal subunit;0.000813840546314631!GO:0005763;mitochondrial small ribosomal subunit;0.000813840546314631!GO:0006099;tricarboxylic acid cycle;0.000825814848195482!GO:0046356;acetyl-CoA catabolic process;0.000825814848195482!GO:0030176;integral to endoplasmic reticulum membrane;0.000826198861073449!GO:0030660;Golgi-associated vesicle membrane;0.000869897047316378!GO:0009109;coenzyme catabolic process;0.000870778932710322!GO:0004298;threonine endopeptidase activity;0.00089327556585956!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000993061175499856!GO:0005741;mitochondrial outer membrane;0.00100482846566072!GO:0030132;clathrin coat of coated pit;0.00102101445731846!GO:0030029;actin filament-based process;0.00102517610318057!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00106186827399353!GO:0006350;transcription;0.0010694024460914!GO:0031072;heat shock protein binding;0.00107974757942093!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00109320543582967!GO:0030131;clathrin adaptor complex;0.00116346624148724!GO:0030659;cytoplasmic vesicle membrane;0.00122612373228219!GO:0009117;nucleotide metabolic process;0.00127097828151789!GO:0031968;organelle outer membrane;0.00135364066061863!GO:0004674;protein serine/threonine kinase activity;0.00139127677949556!GO:0019867;outer membrane;0.00139891475374738!GO:0005791;rough endoplasmic reticulum;0.00141279959178113!GO:0018196;peptidyl-asparagine modification;0.0014311404954231!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0014311404954231!GO:0006084;acetyl-CoA metabolic process;0.00143212649158419!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00146150327476161!GO:0051252;regulation of RNA metabolic process;0.00149932894018354!GO:0006979;response to oxidative stress;0.00150438875842751!GO:0043488;regulation of mRNA stability;0.00150438875842751!GO:0043487;regulation of RNA stability;0.00150438875842751!GO:0010468;regulation of gene expression;0.00150438875842751!GO:0006891;intra-Golgi vesicle-mediated transport;0.00152139857684838!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00154827803866032!GO:0045941;positive regulation of transcription;0.00155636199617069!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00160771832319052!GO:0007006;mitochondrial membrane organization and biogenesis;0.00168620283871986!GO:0048500;signal recognition particle;0.00168860617647929!GO:0003729;mRNA binding;0.00198935770103463!GO:0051098;regulation of binding;0.00201174512313545!GO:0045892;negative regulation of transcription, DNA-dependent;0.00201174512313545!GO:0006401;RNA catabolic process;0.00203576936520796!GO:0008361;regulation of cell size;0.002141191513938!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00216834677649718!GO:0006839;mitochondrial transport;0.00240680244814556!GO:0030134;ER to Golgi transport vesicle;0.00247351136659236!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00252370820600603!GO:0051920;peroxiredoxin activity;0.0025630824299198!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00258535688135578!GO:0003690;double-stranded DNA binding;0.00258917380003509!GO:0030663;COPI coated vesicle membrane;0.00258917380003509!GO:0030126;COPI vesicle coat;0.00258917380003509!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00262227279751227!GO:0005813;centrosome;0.0026768695914212!GO:0030125;clathrin vesicle coat;0.00287398475070599!GO:0030665;clathrin coated vesicle membrane;0.00287398475070599!GO:0008186;RNA-dependent ATPase activity;0.00302414183849219!GO:0030127;COPII vesicle coat;0.00302414183849219!GO:0012507;ER to Golgi transport vesicle membrane;0.00302414183849219!GO:0016779;nucleotidyltransferase activity;0.00321322083541332!GO:0051101;regulation of DNA binding;0.00321708815069905!GO:0006626;protein targeting to mitochondrion;0.00329270412842919!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00329554471365591!GO:0043681;protein import into mitochondrion;0.00333272972683869!GO:0006917;induction of apoptosis;0.0033653134112492!GO:0045045;secretory pathway;0.0034042204010496!GO:0046474;glycerophospholipid biosynthetic process;0.00347424221118003!GO:0044433;cytoplasmic vesicle part;0.00354212994348849!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00354212994348849!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00354212994348849!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00354212994348849!GO:0016049;cell growth;0.00354212994348849!GO:0005694;chromosome;0.00356075965363697!GO:0006650;glycerophospholipid metabolic process;0.00377088367000792!GO:0030031;cell projection biogenesis;0.00394350811950086!GO:0007265;Ras protein signal transduction;0.004154068161747!GO:0008632;apoptotic program;0.00423846875854296!GO:0035258;steroid hormone receptor binding;0.00431730178185163!GO:0000049;tRNA binding;0.00440771690579893!GO:0008629;induction of apoptosis by intracellular signals;0.00454799547812872!GO:0001558;regulation of cell growth;0.00457743949632069!GO:0000059;protein import into nucleus, docking;0.00462490982865737!GO:0012502;induction of programmed cell death;0.00469798711922788!GO:0046489;phosphoinositide biosynthetic process;0.00482716082716307!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00492634285030671!GO:0045047;protein targeting to ER;0.00492634285030671!GO:0030833;regulation of actin filament polymerization;0.00521659635523277!GO:0008139;nuclear localization sequence binding;0.00530375925722157!GO:0030384;phosphoinositide metabolic process;0.00530375925722157!GO:0030137;COPI-coated vesicle;0.00532410405114822!GO:0006984;ER-nuclear signaling pathway;0.00535723247134283!GO:0012506;vesicle membrane;0.00556458346211953!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00557629597166128!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00562147800015496!GO:0017166;vinculin binding;0.00563587194639697!GO:0016791;phosphoric monoester hydrolase activity;0.00580785920560308!GO:0008287;protein serine/threonine phosphatase complex;0.00582914870721259!GO:0008234;cysteine-type peptidase activity;0.00582914870721259!GO:0046983;protein dimerization activity;0.00599404895362337!GO:0006260;DNA replication;0.00621004047070956!GO:0046467;membrane lipid biosynthetic process;0.00648281022578751!GO:0007050;cell cycle arrest;0.0066690664171427!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00691151100313908!GO:0006509;membrane protein ectodomain proteolysis;0.00691151100313908!GO:0033619;membrane protein proteolysis;0.00691151100313908!GO:0048487;beta-tubulin binding;0.00704619581933872!GO:0015630;microtubule cytoskeleton;0.00743280558003407!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00747493382799683!GO:0006611;protein export from nucleus;0.00751205087132685!GO:0004004;ATP-dependent RNA helicase activity;0.0076364107332399!GO:0030521;androgen receptor signaling pathway;0.00771009471618448!GO:0006383;transcription from RNA polymerase III promoter;0.00779607452862321!GO:0003899;DNA-directed RNA polymerase activity;0.00793200187781508!GO:0015631;tubulin binding;0.0080443356969138!GO:0030027;lamellipodium;0.00812946149609296!GO:0006417;regulation of translation;0.00839342221319844!GO:0006091;generation of precursor metabolites and energy;0.00847754085869165!GO:0006354;RNA elongation;0.00858040797335292!GO:0006334;nucleosome assembly;0.0087500077909426!GO:0030503;regulation of cell redox homeostasis;0.00888959088805007!GO:0005815;microtubule organizing center;0.00893762805872645!GO:0016363;nuclear matrix;0.00897496166425433!GO:0008610;lipid biosynthetic process;0.00897496166425433!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00899377718070963!GO:0015399;primary active transmembrane transporter activity;0.00899377718070963!GO:0000278;mitotic cell cycle;0.00933033265694896!GO:0005684;U2-dependent spliceosome;0.00943689813280746!GO:0015980;energy derivation by oxidation of organic compounds;0.00953745886846641!GO:0030880;RNA polymerase complex;0.00967577826216536!GO:0006892;post-Golgi vesicle-mediated transport;0.00968171130809826!GO:0004721;phosphoprotein phosphatase activity;0.00968171130809826!GO:0008312;7S RNA binding;0.00969812560888914!GO:0006749;glutathione metabolic process;0.00981357623971797!GO:0008637;apoptotic mitochondrial changes;0.00982691028854655!GO:0031625;ubiquitin protein ligase binding;0.0100510023774738!GO:0032507;maintenance of cellular protein localization;0.0102963424136983!GO:0006414;translational elongation;0.0105371543713314!GO:0031902;late endosome membrane;0.0106098454622544!GO:0007010;cytoskeleton organization and biogenesis;0.0108559516050275!GO:0006351;transcription, DNA-dependent;0.0108559516050275!GO:0031497;chromatin assembly;0.0109352433416824!GO:0032774;RNA biosynthetic process;0.0115266783753294!GO:0016311;dephosphorylation;0.0117892573227371!GO:0003756;protein disulfide isomerase activity;0.0120010912926107!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0120010912926107!GO:0044427;chromosomal part;0.0123593064252142!GO:0003702;RNA polymerase II transcription factor activity;0.0124445670463785!GO:0031901;early endosome membrane;0.012583177616077!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0127283752202688!GO:0033043;regulation of organelle organization and biogenesis;0.0127283752202688!GO:0031529;ruffle organization and biogenesis;0.013203452976095!GO:0015992;proton transport;0.0132840413718522!GO:0051287;NAD binding;0.0133776848027127!GO:0003711;transcription elongation regulator activity;0.0137916864334362!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0138668116676395!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0138668116676395!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0138843387688919!GO:0007242;intracellular signaling cascade;0.0138940119658566!GO:0046822;regulation of nucleocytoplasmic transport;0.0140078643515766!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0143368381182554!GO:0051087;chaperone binding;0.0147509527955244!GO:0006818;hydrogen transport;0.0149908365229471!GO:0048144;fibroblast proliferation;0.0151047034264101!GO:0048145;regulation of fibroblast proliferation;0.0151047034264101!GO:0016272;prefoldin complex;0.0152565853308558!GO:0030433;ER-associated protein catabolic process;0.0153739614779579!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0153739614779579!GO:0030518;steroid hormone receptor signaling pathway;0.0156284830637287!GO:0050681;androgen receptor binding;0.0159016884155433!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0159458113042062!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0166485303014999!GO:0000428;DNA-directed RNA polymerase complex;0.0166485303014999!GO:0033673;negative regulation of kinase activity;0.016738445207099!GO:0006469;negative regulation of protein kinase activity;0.016738445207099!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.016738445207099!GO:0043022;ribosome binding;0.01731933849439!GO:0016251;general RNA polymerase II transcription factor activity;0.0177460620613002!GO:0005774;vacuolar membrane;0.0183004635715967!GO:0045334;clathrin-coated endocytic vesicle;0.0191474225455346!GO:0006352;transcription initiation;0.0192851692500341!GO:0008154;actin polymerization and/or depolymerization;0.0193464241032313!GO:0032984;macromolecular complex disassembly;0.0196350595679142!GO:0048146;positive regulation of fibroblast proliferation;0.0197976980909774!GO:0035035;histone acetyltransferase binding;0.0203419346884544!GO:0006595;polyamine metabolic process;0.0205014018351518!GO:0000159;protein phosphatase type 2A complex;0.0206011022373082!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0209598164981417!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0211374784685523!GO:0032535;regulation of cellular component size;0.0211374784685523!GO:0000096;sulfur amino acid metabolic process;0.0212486559117662!GO:0030041;actin filament polymerization;0.0213742702021528!GO:0019783;small conjugating protein-specific protease activity;0.0214036944281962!GO:0008033;tRNA processing;0.0214776795560325!GO:0051235;maintenance of localization;0.0214776795560325!GO:0006643;membrane lipid metabolic process;0.0221528047238579!GO:0007034;vacuolar transport;0.0222501761333957!GO:0030832;regulation of actin filament length;0.0223567981065154!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0225120742043819!GO:0004722;protein serine/threonine phosphatase activity;0.0227769184304296!GO:0016584;nucleosome positioning;0.0229185410639157!GO:0043621;protein self-association;0.0231525134204501!GO:0045926;negative regulation of growth;0.023317931701613!GO:0043624;cellular protein complex disassembly;0.0235030939931367!GO:0032940;secretion by cell;0.0236494515998486!GO:0051651;maintenance of cellular localization;0.0236494515998486!GO:0045792;negative regulation of cell size;0.0241130407220182!GO:0006497;protein amino acid lipidation;0.0246285916216751!GO:0030140;trans-Golgi network transport vesicle;0.0247497488035604!GO:0031326;regulation of cellular biosynthetic process;0.0248454085447912!GO:0004680;casein kinase activity;0.0251370061609233!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0253741007289686!GO:0008286;insulin receptor signaling pathway;0.0253957518299385!GO:0004843;ubiquitin-specific protease activity;0.0253957518299385!GO:0030308;negative regulation of cell growth;0.0255574387713388!GO:0006897;endocytosis;0.0260151649330094!GO:0010324;membrane invagination;0.0260151649330094!GO:0030032;lamellipodium biogenesis;0.0260495268162078!GO:0050178;phenylpyruvate tautomerase activity;0.026739454654526!GO:0045185;maintenance of protein localization;0.0271851149892994!GO:0040008;regulation of growth;0.0272758296707207!GO:0030145;manganese ion binding;0.0274239919940557!GO:0043241;protein complex disassembly;0.0277261055632007!GO:0045449;regulation of transcription;0.0277878694218455!GO:0006506;GPI anchor biosynthetic process;0.0277971141964024!GO:0000209;protein polyubiquitination;0.0287771255590404!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0289411281256579!GO:0005869;dynactin complex;0.0299818205013632!GO:0007030;Golgi organization and biogenesis;0.0301855903624677!GO:0050790;regulation of catalytic activity;0.0303687389415554!GO:0008601;protein phosphatase type 2A regulator activity;0.0306075236063562!GO:0051059;NF-kappaB binding;0.0306200626262657!GO:0016126;sterol biosynthetic process;0.0313273025155609!GO:0003746;translation elongation factor activity;0.0313273025155609!GO:0005637;nuclear inner membrane;0.0313408818981593!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0316052047894301!GO:0003682;chromatin binding;0.0317267233742736!GO:0006376;mRNA splice site selection;0.0320869999221728!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0320869999221728!GO:0006470;protein amino acid dephosphorylation;0.0320869999221728!GO:0008426;protein kinase C inhibitor activity;0.0322899605597204!GO:0043492;ATPase activity, coupled to movement of substances;0.0326046632516758!GO:0051348;negative regulation of transferase activity;0.0326046632516758!GO:0016301;kinase activity;0.0334396040588233!GO:0042158;lipoprotein biosynthetic process;0.0335555922271647!GO:0006505;GPI anchor metabolic process;0.0338911138045508!GO:0004850;uridine phosphorylase activity;0.0338911138045508!GO:0005669;transcription factor TFIID complex;0.0344584650852178!GO:0032594;protein transport within lipid bilayer;0.0345888304331602!GO:0032907;transforming growth factor-beta3 production;0.0345888304331602!GO:0032596;protein transport into lipid raft;0.0345888304331602!GO:0032910;regulation of transforming growth factor-beta3 production;0.0345888304331602!GO:0032595;B cell receptor transport within lipid bilayer;0.0345888304331602!GO:0033606;chemokine receptor transport within lipid bilayer;0.0345888304331602!GO:0032600;chemokine receptor transport out of lipid raft;0.0345888304331602!GO:0032599;protein transport out of lipid raft;0.0345888304331602!GO:0032597;B cell receptor transport into lipid raft;0.0345888304331602!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0345888304331602!GO:0003779;actin binding;0.0354859548112811!GO:0050662;coenzyme binding;0.0358449424377406!GO:0006607;NLS-bearing substrate import into nucleus;0.0358742516010358!GO:0006338;chromatin remodeling;0.0365464879252829!GO:0009889;regulation of biosynthetic process;0.0368788468157637!GO:0030968;unfolded protein response;0.0383167245942522!GO:0001666;response to hypoxia;0.0401528558123367!GO:0031301;integral to organelle membrane;0.0401528558123367!GO:0007004;telomere maintenance via telomerase;0.0404019009050925!GO:0008652;amino acid biosynthetic process;0.0407543461867378!GO:0007041;lysosomal transport;0.0407705101595997!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0411707322230067!GO:0044452;nucleolar part;0.0414288337279096!GO:0022406;membrane docking;0.0418544693882273!GO:0048278;vesicle docking;0.0418544693882273!GO:0005765;lysosomal membrane;0.0418544693882273!GO:0030911;TPR domain binding;0.0419283943089238!GO:0044437;vacuolar part;0.0420831199907611!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0420831199907611!GO:0006458;'de novo' protein folding;0.0425994154011786!GO:0051084;'de novo' posttranslational protein folding;0.0425994154011786!GO:0007040;lysosome organization and biogenesis;0.0425994154011786!GO:0007266;Rho protein signal transduction;0.0425999280789594!GO:0046483;heterocycle metabolic process;0.0439088396024074!GO:0030128;clathrin coat of endocytic vesicle;0.0439956351579402!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0439956351579402!GO:0030122;AP-2 adaptor complex;0.0439956351579402!GO:0031418;L-ascorbic acid binding;0.0441721896763177!GO:0004860;protein kinase inhibitor activity;0.0441721896763177!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0443467674377451!GO:0022890;inorganic cation transmembrane transporter activity;0.0445050515932581!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0445375168260003!GO:0032981;mitochondrial respiratory chain complex I assembly;0.044928409182668!GO:0010257;NADH dehydrogenase complex assembly;0.044928409182668!GO:0033108;mitochondrial respiratory chain complex assembly;0.044928409182668!GO:0005832;chaperonin-containing T-complex;0.0450481816232904!GO:0001836;release of cytochrome c from mitochondria;0.0451453956338111!GO:0001889;liver development;0.0459096678719491!GO:0030984;kininogen binding;0.0463483880678451!GO:0004213;cathepsin B activity;0.0463483880678451!GO:0007032;endosome organization and biogenesis;0.0463574989865942!GO:0004221;ubiquitin thiolesterase activity;0.0463763367271831!GO:0005784;translocon complex;0.046849932889162!GO:0009165;nucleotide biosynthetic process;0.0476594860181325!GO:0040029;regulation of gene expression, epigenetic;0.0480528027634638!GO:0044262;cellular carbohydrate metabolic process;0.0489120035675842!GO:0046519;sphingoid metabolic process;0.0489236832343554!GO:0000118;histone deacetylase complex;0.0491899230018144!GO:0006518;peptide metabolic process;0.049359103079987!GO:0045947;negative regulation of translational initiation;0.0493657404448281!GO:0017134;fibroblast growth factor binding;0.0497269725694376!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0497980697543572 | |||
|sample_id=11406 | |sample_id=11406 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=PPARG:2.41424787946;TP53:2.1869692889;ZEB1:2.18502661034;HIF1A:2.09544556937;TBX4,5:1.81557012404;SNAI1..3:1.64137202299;ONECUT1,2:1.55917921485;VSX1,2:1.40436933667;TEF:1.33431871488;T:1.1962614171;NKX2-1,4:1.18902124521;MYOD1:1.17586347935;TFCP2:1.15354508302;XCPE1{core}:1.11526831104;SP1:1.09883508631;ZNF148:0.98024395738;TFAP2{A,C}:0.931881864147;LMO2:0.89763181822;bHLH_family:0.844107215346;TFAP2B:0.811751182215;ADNP_IRX_SIX_ZHX:0.770104725017;TEAD1:0.742719944082;IKZF1:0.728873859268;HLF:0.719398114841;FOXQ1:0.71100162184;CRX:0.696779902788;POU6F1:0.621160849658;EGR1..3:0.616914508316;FOXM1:0.550155975566;UFEwm:0.543829442985;PAX1,9:0.530164526214;ZNF423:0.526945950026;MAZ:0.497017593265;CEBPA,B_DDIT3:0.496429660279;AIRE:0.447446845272;MTF1:0.401589416569;TBP:0.384079207381;STAT5{A,B}:0.379556585202;HOX{A4,D4}:0.370593422964;FOS_FOS{B,L1}_JUN{B,D}:0.368530437468;HMX1:0.364021571489;GLI1..3:0.363045856094;ELK1,4_GABP{A,B1}:0.351954254588;SOX17:0.333517878845;ARID5B:0.326001313586;FOX{F1,F2,J1}:0.321977120416;TLX2:0.300808749103;MED-1{core}:0.299464876448;FOSL2:0.296854984169;ZFP161:0.291016250477;NKX2-3_NKX2-5:0.287112812613;ATF4:0.284331158196;SPZ1:0.252109261893;GTF2A1,2:0.241193851487;ZIC1..3:0.221047233106;NR6A1:0.217725137082;CDC5L:0.209483606114;HIC1:0.203415565395;FOXL1:0.201444465698;HAND1,2:0.200142064216;TFDP1:0.193622853263;EVI1:0.193125183639;PAX4:0.187603784273;NR5A1,2:0.174046236178;BACH2:0.16429583936;ESR1:0.155833436792;MTE{core}:0.152104539544;FOXN1:0.131700257079;NFIL3:0.128684321882;NKX2-2,8:0.100993394892;PAX5:0.0886315439466;ZBTB6:0.083713090228;POU2F1..3:0.0830613670768;KLF4:0.0717802414778;FOXO1,3,4:0.0711603169891;PAX2:0.0555564423313;TOPORS:-0.00185226233612;AR:-0.0132751932347;REST:-0.0179422590096;MAFB:-0.0349981381939;GFI1B:-0.0410653463833;HMGA1,2:-0.0634319549041;RXRA_VDR{dimer}:-0.0668826343241;MYBL2:-0.0856553812102;PATZ1:-0.0862529756017;ZBTB16:-0.096272470944;PDX1:-0.102607569578;RREB1:-0.120526516469;NKX3-2:-0.12141233356;NFE2:-0.124308779809;PAX6:-0.128210712086;ATF5_CREB3:-0.131806772477;POU3F1..4:-0.155248158681;GTF2I:-0.173042722454;ATF6:-0.177013917583;GZF1:-0.1832095918;NHLH1,2:-0.184962311681;ZNF143:-0.195825031117;RORA:-0.197099271575;POU1F1:-0.206624644284;CREB1:-0.208964430645;EBF1:-0.211059626169;HOX{A6,A7,B6,B7}:-0.211747372888;NFKB1_REL_RELA:-0.228424816735;LHX3,4:-0.232393290591;IRF7:-0.2381723728;RXR{A,B,G}:-0.240471767832;HNF1A:-0.254984056049;EP300:-0.255078650275;NKX3-1:-0.262240032781;RBPJ:-0.286404091221;GATA6:-0.288667631474;TLX1..3_NFIC{dimer}:-0.295253967172;TFAP4:-0.297162974222;AHR_ARNT_ARNT2:-0.304684335979;HSF1,2:-0.307955149825;SOX2:-0.311828540708;HNF4A_NR2F1,2:-0.316571286319;BREu{core}:-0.320071044334;STAT2,4,6:-0.339443229527;ZNF238:-0.346177114102;ATF2:-0.347270766938;NKX6-1,2:-0.34894041993;EN1,2:-0.385468625365;SPI1:-0.385959564435;MYFfamily:-0.395588967948;NRF1:-0.404907560205;CDX1,2,4:-0.406065444283;POU5F1:-0.4089021636;FOX{D1,D2}:-0.409250462293;STAT1,3:-0.410314382571;PAX8:-0.412863278512;FOXA2:-0.414585284032;SREBF1,2:-0.42806248098;SMAD1..7,9:-0.432287792999;FOXP3:-0.442966836417;JUN:-0.476093918848;CUX2:-0.479288584073;LEF1_TCF7_TCF7L1,2:-0.486737924056;ALX1:-0.490827438324;NANOG:-0.51740623577;HOX{A5,B5}:-0.523430349495;OCT4_SOX2{dimer}:-0.527313337663;ETS1,2:-0.540313410086;NFE2L2:-0.541164397669;ALX4:-0.543095390994;MZF1:-0.571962101257;FOXD3:-0.578152213385;ELF1,2,4:-0.584130249988;PRRX1,2:-0.600635121416;BPTF:-0.601947002645;PITX1..3:-0.627971987044;RUNX1..3:-0.655516543624;SPIB:-0.655731803045;RFX2..5_RFXANK_RFXAP:-0.679443230225;NFIX:-0.687435855775;ZNF384:-0.690820751548;PRDM1:-0.70077861587;MYB:-0.718102021827;HBP1_HMGB_SSRP1_UBTF:-0.740792261797;MEF2{A,B,C,D}:-0.757272475842;RFX1:-0.798265828209;IKZF2:-0.817339556939;FOX{I1,J2}:-0.844388262104;NFY{A,B,C}:-0.853449071817;NR1H4:-0.860532022688;NFATC1..3:-0.864092002036;SRF:-0.891306140689;NR3C1:-0.893220971897;PAX3,7:-0.928929801375;FOXP1:-0.933192652371;SOX{8,9,10}:-0.95714717158;DMAP1_NCOR{1,2}_SMARC:-0.96226037475;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.962944407044;IRF1,2:-0.967084523695;DBP:-0.985454885948;YY1:-1.03921006775;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.04197742845;HOXA9_MEIS1:-1.04867649954;GFI1:-1.04954545094;NFE2L1:-1.06059001954;TAL1_TCF{3,4,12}:-1.06823352994;E2F1..5:-1.08334263971;NANOG{mouse}:-1.13438621019;XBP1:-1.13485397524;GATA4:-1.13532155959;SOX5:-1.17795677366;TGIF1:-1.1934065862;PBX1:-1.26565026024;ESRRA:-1.30175628399;GCM1,2:-1.36902756071;HES1:-1.46862696718 | |top_motifs=PPARG:2.41424787946;TP53:2.1869692889;ZEB1:2.18502661034;HIF1A:2.09544556937;TBX4,5:1.81557012404;SNAI1..3:1.64137202299;ONECUT1,2:1.55917921485;VSX1,2:1.40436933667;TEF:1.33431871488;T:1.1962614171;NKX2-1,4:1.18902124521;MYOD1:1.17586347935;TFCP2:1.15354508302;XCPE1{core}:1.11526831104;SP1:1.09883508631;ZNF148:0.98024395738;TFAP2{A,C}:0.931881864147;LMO2:0.89763181822;bHLH_family:0.844107215346;TFAP2B:0.811751182215;ADNP_IRX_SIX_ZHX:0.770104725017;TEAD1:0.742719944082;IKZF1:0.728873859268;HLF:0.719398114841;FOXQ1:0.71100162184;CRX:0.696779902788;POU6F1:0.621160849658;EGR1..3:0.616914508316;FOXM1:0.550155975566;UFEwm:0.543829442985;PAX1,9:0.530164526214;ZNF423:0.526945950026;MAZ:0.497017593265;CEBPA,B_DDIT3:0.496429660279;AIRE:0.447446845272;MTF1:0.401589416569;TBP:0.384079207381;STAT5{A,B}:0.379556585202;HOX{A4,D4}:0.370593422964;FOS_FOS{B,L1}_JUN{B,D}:0.368530437468;HMX1:0.364021571489;GLI1..3:0.363045856094;ELK1,4_GABP{A,B1}:0.351954254588;SOX17:0.333517878845;ARID5B:0.326001313586;FOX{F1,F2,J1}:0.321977120416;TLX2:0.300808749103;MED-1{core}:0.299464876448;FOSL2:0.296854984169;ZFP161:0.291016250477;NKX2-3_NKX2-5:0.287112812613;ATF4:0.284331158196;SPZ1:0.252109261893;GTF2A1,2:0.241193851487;ZIC1..3:0.221047233106;NR6A1:0.217725137082;CDC5L:0.209483606114;HIC1:0.203415565395;FOXL1:0.201444465698;HAND1,2:0.200142064216;TFDP1:0.193622853263;EVI1:0.193125183639;PAX4:0.187603784273;NR5A1,2:0.174046236178;BACH2:0.16429583936;ESR1:0.155833436792;MTE{core}:0.152104539544;FOXN1:0.131700257079;NFIL3:0.128684321882;NKX2-2,8:0.100993394892;PAX5:0.0886315439466;ZBTB6:0.083713090228;POU2F1..3:0.0830613670768;KLF4:0.0717802414778;FOXO1,3,4:0.0711603169891;PAX2:0.0555564423313;TOPORS:-0.00185226233612;AR:-0.0132751932347;REST:-0.0179422590096;MAFB:-0.0349981381939;GFI1B:-0.0410653463833;HMGA1,2:-0.0634319549041;RXRA_VDR{dimer}:-0.0668826343241;MYBL2:-0.0856553812102;PATZ1:-0.0862529756017;ZBTB16:-0.096272470944;PDX1:-0.102607569578;RREB1:-0.120526516469;NKX3-2:-0.12141233356;NFE2:-0.124308779809;PAX6:-0.128210712086;ATF5_CREB3:-0.131806772477;POU3F1..4:-0.155248158681;GTF2I:-0.173042722454;ATF6:-0.177013917583;GZF1:-0.1832095918;NHLH1,2:-0.184962311681;ZNF143:-0.195825031117;RORA:-0.197099271575;POU1F1:-0.206624644284;CREB1:-0.208964430645;EBF1:-0.211059626169;HOX{A6,A7,B6,B7}:-0.211747372888;NFKB1_REL_RELA:-0.228424816735;LHX3,4:-0.232393290591;IRF7:-0.2381723728;RXR{A,B,G}:-0.240471767832;HNF1A:-0.254984056049;EP300:-0.255078650275;NKX3-1:-0.262240032781;RBPJ:-0.286404091221;GATA6:-0.288667631474;TLX1..3_NFIC{dimer}:-0.295253967172;TFAP4:-0.297162974222;AHR_ARNT_ARNT2:-0.304684335979;HSF1,2:-0.307955149825;SOX2:-0.311828540708;HNF4A_NR2F1,2:-0.316571286319;BREu{core}:-0.320071044334;STAT2,4,6:-0.339443229527;ZNF238:-0.346177114102;ATF2:-0.347270766938;NKX6-1,2:-0.34894041993;EN1,2:-0.385468625365;SPI1:-0.385959564435;MYFfamily:-0.395588967948;NRF1:-0.404907560205;CDX1,2,4:-0.406065444283;POU5F1:-0.4089021636;FOX{D1,D2}:-0.409250462293;STAT1,3:-0.410314382571;PAX8:-0.412863278512;FOXA2:-0.414585284032;SREBF1,2:-0.42806248098;SMAD1..7,9:-0.432287792999;FOXP3:-0.442966836417;JUN:-0.476093918848;CUX2:-0.479288584073;LEF1_TCF7_TCF7L1,2:-0.486737924056;ALX1:-0.490827438324;NANOG:-0.51740623577;HOX{A5,B5}:-0.523430349495;OCT4_SOX2{dimer}:-0.527313337663;ETS1,2:-0.540313410086;NFE2L2:-0.541164397669;ALX4:-0.543095390994;MZF1:-0.571962101257;FOXD3:-0.578152213385;ELF1,2,4:-0.584130249988;PRRX1,2:-0.600635121416;BPTF:-0.601947002645;PITX1..3:-0.627971987044;RUNX1..3:-0.655516543624;SPIB:-0.655731803045;RFX2..5_RFXANK_RFXAP:-0.679443230225;NFIX:-0.687435855775;ZNF384:-0.690820751548;PRDM1:-0.70077861587;MYB:-0.718102021827;HBP1_HMGB_SSRP1_UBTF:-0.740792261797;MEF2{A,B,C,D}:-0.757272475842;RFX1:-0.798265828209;IKZF2:-0.817339556939;FOX{I1,J2}:-0.844388262104;NFY{A,B,C}:-0.853449071817;NR1H4:-0.860532022688;NFATC1..3:-0.864092002036;SRF:-0.891306140689;NR3C1:-0.893220971897;PAX3,7:-0.928929801375;FOXP1:-0.933192652371;SOX{8,9,10}:-0.95714717158;DMAP1_NCOR{1,2}_SMARC:-0.96226037475;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.962944407044;IRF1,2:-0.967084523695;DBP:-0.985454885948;YY1:-1.03921006775;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.04197742845;HOXA9_MEIS1:-1.04867649954;GFI1:-1.04954545094;NFE2L1:-1.06059001954;TAL1_TCF{3,4,12}:-1.06823352994;E2F1..5:-1.08334263971;NANOG{mouse}:-1.13438621019;XBP1:-1.13485397524;GATA4:-1.13532155959;SOX5:-1.17795677366;TGIF1:-1.1934065862;PBX1:-1.26565026024;ESRRA:-1.30175628399;GCM1,2:-1.36902756071;HES1:-1.46862696718 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11406-118E2;search_select_hide=table117:FF:11406-118E2 | |||
}} | }} | ||
Latest revision as of 17:58, 4 June 2020
| Name: | Small Airway Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12016 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12016
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12016
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.38 |
| 10 | 10 | 0.0325 |
| 100 | 100 | 0.168 |
| 101 | 101 | 0.0789 |
| 102 | 102 | 0.403 |
| 103 | 103 | 0.375 |
| 104 | 104 | 0.778 |
| 105 | 105 | 0.619 |
| 106 | 106 | 0.201 |
| 107 | 107 | 0.234 |
| 108 | 108 | 0.15 |
| 109 | 109 | 0.372 |
| 11 | 11 | 0.426 |
| 110 | 110 | 0.462 |
| 111 | 111 | 0.562 |
| 112 | 112 | 0.89 |
| 113 | 113 | 0.661 |
| 114 | 114 | 0.977 |
| 115 | 115 | 0.111 |
| 116 | 116 | 0.48 |
| 117 | 117 | 0.539 |
| 118 | 118 | 0.321 |
| 119 | 119 | 0.93 |
| 12 | 12 | 0.632 |
| 120 | 120 | 0.139 |
| 121 | 121 | 0.323 |
| 122 | 122 | 0.255 |
| 123 | 123 | 0.179 |
| 124 | 124 | 0.00303 |
| 125 | 125 | 0.969 |
| 126 | 126 | 0.815 |
| 127 | 127 | 0.346 |
| 128 | 128 | 0.882 |
| 129 | 129 | 0.999 |
| 13 | 13 | 0.88 |
| 130 | 130 | 0.0618 |
| 131 | 131 | 0.812 |
| 132 | 132 | 0.237 |
| 133 | 133 | 0.00198 |
| 134 | 134 | 0.0936 |
| 135 | 135 | 0.553 |
| 136 | 136 | 0.0034 |
| 137 | 137 | 0.0246 |
| 138 | 138 | 0.934 |
| 139 | 139 | 0.186 |
| 14 | 14 | 0.877 |
| 140 | 140 | 0.183 |
| 141 | 141 | 0.324 |
| 142 | 142 | 0.392 |
| 143 | 143 | 0.11 |
| 144 | 144 | 0.133 |
| 145 | 145 | 0.325 |
| 146 | 146 | 0.1 |
| 147 | 147 | 0.267 |
| 148 | 148 | 0.0377 |
| 149 | 149 | 0.442 |
| 15 | 15 | 0.391 |
| 150 | 150 | 0.537 |
| 151 | 151 | 0.732 |
| 152 | 152 | 0.00737 |
| 153 | 153 | 0.378 |
| 154 | 154 | 0.838 |
| 155 | 155 | 0.426 |
| 156 | 156 | 0.821 |
| 157 | 157 | 0.762 |
| 158 | 158 | 0.496 |
| 159 | 159 | 0.71 |
| 16 | 16 | 0.523 |
| 160 | 160 | 0.0664 |
| 161 | 161 | 0.29 |
| 162 | 162 | 0.502 |
| 163 | 163 | 0.941 |
| 164 | 164 | 0.372 |
| 165 | 165 | 0.87 |
| 166 | 166 | 0.392 |
| 167 | 167 | 0.372 |
| 168 | 168 | 0.65 |
| 169 | 169 | 0.972 |
| 17 | 17 | 0.985 |
| 18 | 18 | 0.463 |
| 19 | 19 | 0.349 |
| 2 | 2 | 0.69 |
| 20 | 20 | 0.466 |
| 21 | 21 | 0.848 |
| 22 | 22 | 0.996 |
| 23 | 23 | 0.293 |
| 24 | 24 | 0.483 |
| 25 | 25 | 0.356 |
| 26 | 26 | 0.611 |
| 27 | 27 | 0.532 |
| 28 | 28 | 0.862 |
| 29 | 29 | 0.997 |
| 3 | 3 | 0.335 |
| 30 | 30 | 0.208 |
| 31 | 31 | 0.783 |
| 32 | 32 | 0.176 |
| 33 | 33 | 0.9 |
| 34 | 34 | 0.237 |
| 35 | 35 | 0.00322 |
| 36 | 36 | 0.0105 |
| 37 | 37 | 0.907 |
| 38 | 38 | 0.92 |
| 39 | 39 | 0.702 |
| 4 | 4 | 0.787 |
| 40 | 40 | 0.585 |
| 41 | 41 | 0.071 |
| 42 | 42 | 0.319 |
| 43 | 43 | 0.499 |
| 44 | 44 | 0.712 |
| 45 | 45 | 0.397 |
| 46 | 46 | 0.458 |
| 47 | 47 | 0.405 |
| 48 | 48 | 0.731 |
| 49 | 49 | 0.0338 |
| 5 | 5 | 0.396 |
| 50 | 50 | 0.74 |
| 51 | 51 | 0.616 |
| 52 | 52 | 0.175 |
| 53 | 53 | 0.029 |
| 54 | 54 | 0.803 |
| 55 | 55 | 0.579 |
| 56 | 56 | 0.868 |
| 57 | 57 | 0.945 |
| 58 | 58 | 0.442 |
| 59 | 59 | 0.895 |
| 6 | 6 | 0.0786 |
| 60 | 60 | 0.341 |
| 61 | 61 | 0.739 |
| 62 | 62 | 0.181 |
| 63 | 63 | 0.707 |
| 64 | 64 | 0.594 |
| 65 | 65 | 0.867 |
| 66 | 66 | 0.754 |
| 67 | 67 | 0.893 |
| 68 | 68 | 0.308 |
| 69 | 69 | 0.344 |
| 7 | 7 | 0.672 |
| 70 | 70 | 0.0301 |
| 71 | 71 | 0.078 |
| 72 | 72 | 0.808 |
| 73 | 73 | 0.0218 |
| 74 | 74 | 0.00499 |
| 75 | 75 | 0.539 |
| 76 | 76 | 0.788 |
| 77 | 77 | 0.68 |
| 78 | 78 | 0.325 |
| 79 | 79 | 0.916 |
| 8 | 8 | 0.477 |
| 80 | 80 | 0.0997 |
| 81 | 81 | 0.0614 |
| 82 | 82 | 0.367 |
| 83 | 83 | 0.211 |
| 84 | 84 | 0.475 |
| 85 | 85 | 0.383 |
| 86 | 86 | 0.756 |
| 87 | 87 | 0.0339 |
| 88 | 88 | 0.54 |
| 89 | 89 | 0.388 |
| 9 | 9 | 0.224 |
| 90 | 90 | 0.15 |
| 91 | 91 | 0.477 |
| 92 | 92 | 0.847 |
| 93 | 93 | 0.71 |
| 94 | 94 | 0.202 |
| 95 | 95 | 0.367 |
| 96 | 96 | 0.0488 |
| 97 | 97 | 0.816 |
| 98 | 98 | 0.125 |
| 99 | 99 | 0.695 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12016
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000166 human small airway epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000166 (human small airway epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
