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{{f5samples
{{f5samples
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|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg38.nobarcode.bam
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|id=FF:11684-122I1
|id=FF:11684-122I1
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|library_id=CNhs12626
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|library_id_phase_based=2:CNhs12626
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|microRNAs=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.ATGTCA.11684
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11684
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.ATGTCA.11684
|name=Hepatocyte, donor3
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|namespace=FANTOM5
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|sample_category=primary cells
Line 92: Line 106:
|top_motifs=HNF4A_NR2F1,2:6.97579996858;HNF1A:6.82376001728;FOXA2:5.49424867026;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.39418454623;BPTF:4.15886774687;STAT2,4,6:3.67804846462;FOX{F1,F2,J1}:3.55406534062;NR6A1:3.39281166518;AR:3.23430741007;NKX2-1,4:2.44697285399;CUX2:2.44386516351;FOXD3:2.30453697011;ADNP_IRX_SIX_ZHX:1.98305545074;EVI1:1.97136628576;POU6F1:1.88723689829;MTF1:1.70827961942;NFIL3:1.47057043203;FOX{D1,D2}:1.41974767218;EP300:1.38817008063;DBP:1.36916018282;TFCP2:1.21545333472;TBP:1.1161665906;TAL1_TCF{3,4,12}:1.09183227619;ARID5B:1.06579400271;ALX4:1.06523397877;HOX{A4,D4}:1.06310937857;GATA6:1.05577278346;IKZF2:1.00250794344;PAX4:0.966898606384;MYOD1:0.929764798057;RBPJ:0.918790495765;FOXM1:0.899213263232;NFE2L1:0.889655465178;CEBPA,B_DDIT3:0.87900046393;ATF6:0.852386941342;FOXP1:0.813152487445;GATA4:0.787608147303;FOXQ1:0.783236480786;ALX1:0.777531534011;SP1:0.760517013627;FOXL1:0.752218935292;MYBL2:0.716424975927;FOX{I1,J2}:0.710683328314;CDX1,2,4:0.688464716333;TOPORS:0.683667289182;HLF:0.639996453694;TLX2:0.626087272055;SMAD1..7,9:0.603266500643;IRF7:0.578822407507;TLX1..3_NFIC{dimer}:0.57077832355;MAZ:0.564612615453;MYFfamily:0.552836577314;NR1H4:0.538035262291;MED-1{core}:0.516435684033;MTE{core}:0.510408299717;FOXP3:0.497811463883;PAX1,9:0.47219124161;MAFB:0.442000988998;bHLH_family:0.421681278613;GLI1..3:0.416849415308;NKX3-2:0.408961966612;RORA:0.393059563548;SNAI1..3:0.388225141686;RREB1:0.387053661846;PAX6:0.369357812785;CRX:0.35207297685;RXRA_VDR{dimer}:0.331774541845;HIC1:0.32186072947;SREBF1,2:0.313247300732;ZNF423:0.30219893652;ONECUT1,2:0.294930145845;RXR{A,B,G}:0.247786664546;ZEB1:0.237167463992;HAND1,2:0.185662895329;PAX2:0.180900925268;ZBTB16:0.137420292929;LMO2:0.135804533859;REST:0.111279730398;TGIF1:0.0959135163532;T:0.095375936759;IKZF1:0.0656952883419;IRF1,2:0.0568787022525;HIF1A:0.0262737766994;NFATC1..3:0.0170904845808;PRDM1:0.00682592853106;NHLH1,2:-0.00975376506091;FOXN1:-0.0111466759145;GFI1:-0.0182030297952;SOX5:-0.0240517350798;UFEwm:-0.0535497996482;NFY{A,B,C}:-0.0818739571494;PATZ1:-0.091780873665;SOX{8,9,10}:-0.106828540918;KLF4:-0.116204509956;NR5A1,2:-0.120871982245;PAX3,7:-0.125371541037;ZNF384:-0.129835118972;ATF2:-0.163583461121;ATF5_CREB3:-0.175797330571;GTF2I:-0.176287344936;SPIB:-0.177702349123;SPI1:-0.193896137709;HOXA9_MEIS1:-0.195699423944;NANOG:-0.216600638603;MEF2{A,B,C,D}:-0.243497138895;STAT1,3:-0.24448983731;NFIX:-0.24804334832;ETS1,2:-0.248824113051;ZFP161:-0.259317077017;BREu{core}:-0.265473001059;ELF1,2,4:-0.275128166228;PBX1:-0.275889745818;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292012080089;ATF4:-0.295378702313;EGR1..3:-0.305595764211;NFE2:-0.346650617692;CREB1:-0.372441585998;GCM1,2:-0.41665092696;AIRE:-0.429788629068;ZNF143:-0.444225839467;TFAP2{A,C}:-0.445621899496;TEAD1:-0.454127821562;TFAP2B:-0.461007943097;SRF:-0.487105904665;PPARG:-0.511031152756;HOX{A5,B5}:-0.535627972579;STAT5{A,B}:-0.551410529508;NFKB1_REL_RELA:-0.570167178892;PDX1:-0.584525377883;TEF:-0.601506211376;HOX{A6,A7,B6,B7}:-0.607808459732;XBP1:-0.611623188124;PAX5:-0.662654725714;GFI1B:-0.664508856861;RUNX1..3:-0.695705687339;XCPE1{core}:-0.696231217482;YY1:-0.725049198202;HMX1:-0.728587030536;SOX17:-0.735099129963;PITX1..3:-0.760098962906;FOXO1,3,4:-0.761273042869;GTF2A1,2:-0.76762075377;GZF1:-0.774212083929;ESR1:-0.822536903031;LEF1_TCF7_TCF7L1,2:-0.862071285821;HMGA1,2:-0.868734074066;NFE2L2:-0.879092585807;NR3C1:-0.882775931017;AHR_ARNT_ARNT2:-0.911128566556;LHX3,4:-0.919193062073;ZBTB6:-0.920521601541;MZF1:-0.924921056152;DMAP1_NCOR{1,2}_SMARC:-0.925081567445;NRF1:-0.929056479209;FOSL2:-0.938382928333;EN1,2:-0.94530991108;SPZ1:-0.973560312493;ZNF238:-0.984239105092;JUN:-0.991170648012;HSF1,2:-1.00246305406;POU2F1..3:-1.02114532339;TP53:-1.02767113638;TFAP4:-1.06981726143;FOS_FOS{B,L1}_JUN{B,D}:-1.0966025243;OCT4_SOX2{dimer}:-1.10476214599;ZIC1..3:-1.10561539541;ZNF148:-1.12917702196;BACH2:-1.17060336076;TFDP1:-1.1802020484;RFX2..5_RFXANK_RFXAP:-1.20172905034;POU1F1:-1.20480554934;ELK1,4_GABP{A,B1}:-1.23440954681;RFX1:-1.23460801546;EBF1:-1.23663866105;ESRRA:-1.24017601252;E2F1..5:-1.25505896692;VSX1,2:-1.26665496626;HES1:-1.2689458053;PRRX1,2:-1.29370110828;TBX4,5:-1.31274214034;HBP1_HMGB_SSRP1_UBTF:-1.3465344684;NKX2-3_NKX2-5:-1.39432678078;NKX3-1:-1.46611967935;MYB:-1.52987969329;NKX6-1,2:-1.57636907708;SOX2:-1.60703098382;CDC5L:-1.63496388586;NANOG{mouse}:-1.65733194671;NKX2-2,8:-1.77467906937;POU3F1..4:-1.79121336108;POU5F1:-2.01019028191;PAX8:-2.20017930743
|top_motifs=HNF4A_NR2F1,2:6.97579996858;HNF1A:6.82376001728;FOXA2:5.49424867026;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.39418454623;BPTF:4.15886774687;STAT2,4,6:3.67804846462;FOX{F1,F2,J1}:3.55406534062;NR6A1:3.39281166518;AR:3.23430741007;NKX2-1,4:2.44697285399;CUX2:2.44386516351;FOXD3:2.30453697011;ADNP_IRX_SIX_ZHX:1.98305545074;EVI1:1.97136628576;POU6F1:1.88723689829;MTF1:1.70827961942;NFIL3:1.47057043203;FOX{D1,D2}:1.41974767218;EP300:1.38817008063;DBP:1.36916018282;TFCP2:1.21545333472;TBP:1.1161665906;TAL1_TCF{3,4,12}:1.09183227619;ARID5B:1.06579400271;ALX4:1.06523397877;HOX{A4,D4}:1.06310937857;GATA6:1.05577278346;IKZF2:1.00250794344;PAX4:0.966898606384;MYOD1:0.929764798057;RBPJ:0.918790495765;FOXM1:0.899213263232;NFE2L1:0.889655465178;CEBPA,B_DDIT3:0.87900046393;ATF6:0.852386941342;FOXP1:0.813152487445;GATA4:0.787608147303;FOXQ1:0.783236480786;ALX1:0.777531534011;SP1:0.760517013627;FOXL1:0.752218935292;MYBL2:0.716424975927;FOX{I1,J2}:0.710683328314;CDX1,2,4:0.688464716333;TOPORS:0.683667289182;HLF:0.639996453694;TLX2:0.626087272055;SMAD1..7,9:0.603266500643;IRF7:0.578822407507;TLX1..3_NFIC{dimer}:0.57077832355;MAZ:0.564612615453;MYFfamily:0.552836577314;NR1H4:0.538035262291;MED-1{core}:0.516435684033;MTE{core}:0.510408299717;FOXP3:0.497811463883;PAX1,9:0.47219124161;MAFB:0.442000988998;bHLH_family:0.421681278613;GLI1..3:0.416849415308;NKX3-2:0.408961966612;RORA:0.393059563548;SNAI1..3:0.388225141686;RREB1:0.387053661846;PAX6:0.369357812785;CRX:0.35207297685;RXRA_VDR{dimer}:0.331774541845;HIC1:0.32186072947;SREBF1,2:0.313247300732;ZNF423:0.30219893652;ONECUT1,2:0.294930145845;RXR{A,B,G}:0.247786664546;ZEB1:0.237167463992;HAND1,2:0.185662895329;PAX2:0.180900925268;ZBTB16:0.137420292929;LMO2:0.135804533859;REST:0.111279730398;TGIF1:0.0959135163532;T:0.095375936759;IKZF1:0.0656952883419;IRF1,2:0.0568787022525;HIF1A:0.0262737766994;NFATC1..3:0.0170904845808;PRDM1:0.00682592853106;NHLH1,2:-0.00975376506091;FOXN1:-0.0111466759145;GFI1:-0.0182030297952;SOX5:-0.0240517350798;UFEwm:-0.0535497996482;NFY{A,B,C}:-0.0818739571494;PATZ1:-0.091780873665;SOX{8,9,10}:-0.106828540918;KLF4:-0.116204509956;NR5A1,2:-0.120871982245;PAX3,7:-0.125371541037;ZNF384:-0.129835118972;ATF2:-0.163583461121;ATF5_CREB3:-0.175797330571;GTF2I:-0.176287344936;SPIB:-0.177702349123;SPI1:-0.193896137709;HOXA9_MEIS1:-0.195699423944;NANOG:-0.216600638603;MEF2{A,B,C,D}:-0.243497138895;STAT1,3:-0.24448983731;NFIX:-0.24804334832;ETS1,2:-0.248824113051;ZFP161:-0.259317077017;BREu{core}:-0.265473001059;ELF1,2,4:-0.275128166228;PBX1:-0.275889745818;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292012080089;ATF4:-0.295378702313;EGR1..3:-0.305595764211;NFE2:-0.346650617692;CREB1:-0.372441585998;GCM1,2:-0.41665092696;AIRE:-0.429788629068;ZNF143:-0.444225839467;TFAP2{A,C}:-0.445621899496;TEAD1:-0.454127821562;TFAP2B:-0.461007943097;SRF:-0.487105904665;PPARG:-0.511031152756;HOX{A5,B5}:-0.535627972579;STAT5{A,B}:-0.551410529508;NFKB1_REL_RELA:-0.570167178892;PDX1:-0.584525377883;TEF:-0.601506211376;HOX{A6,A7,B6,B7}:-0.607808459732;XBP1:-0.611623188124;PAX5:-0.662654725714;GFI1B:-0.664508856861;RUNX1..3:-0.695705687339;XCPE1{core}:-0.696231217482;YY1:-0.725049198202;HMX1:-0.728587030536;SOX17:-0.735099129963;PITX1..3:-0.760098962906;FOXO1,3,4:-0.761273042869;GTF2A1,2:-0.76762075377;GZF1:-0.774212083929;ESR1:-0.822536903031;LEF1_TCF7_TCF7L1,2:-0.862071285821;HMGA1,2:-0.868734074066;NFE2L2:-0.879092585807;NR3C1:-0.882775931017;AHR_ARNT_ARNT2:-0.911128566556;LHX3,4:-0.919193062073;ZBTB6:-0.920521601541;MZF1:-0.924921056152;DMAP1_NCOR{1,2}_SMARC:-0.925081567445;NRF1:-0.929056479209;FOSL2:-0.938382928333;EN1,2:-0.94530991108;SPZ1:-0.973560312493;ZNF238:-0.984239105092;JUN:-0.991170648012;HSF1,2:-1.00246305406;POU2F1..3:-1.02114532339;TP53:-1.02767113638;TFAP4:-1.06981726143;FOS_FOS{B,L1}_JUN{B,D}:-1.0966025243;OCT4_SOX2{dimer}:-1.10476214599;ZIC1..3:-1.10561539541;ZNF148:-1.12917702196;BACH2:-1.17060336076;TFDP1:-1.1802020484;RFX2..5_RFXANK_RFXAP:-1.20172905034;POU1F1:-1.20480554934;ELK1,4_GABP{A,B1}:-1.23440954681;RFX1:-1.23460801546;EBF1:-1.23663866105;ESRRA:-1.24017601252;E2F1..5:-1.25505896692;VSX1,2:-1.26665496626;HES1:-1.2689458053;PRRX1,2:-1.29370110828;TBX4,5:-1.31274214034;HBP1_HMGB_SSRP1_UBTF:-1.3465344684;NKX2-3_NKX2-5:-1.39432678078;NKX3-1:-1.46611967935;MYB:-1.52987969329;NKX6-1,2:-1.57636907708;SOX2:-1.60703098382;CDC5L:-1.63496388586;NANOG{mouse}:-1.65733194671;NKX2-2,8:-1.77467906937;POU3F1..4:-1.79121336108;POU5F1:-2.01019028191;PAX8:-2.20017930743
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11684-122I1;search_select_hide=table117:FF:11684-122I1
}}
}}

Latest revision as of 18:14, 4 June 2020

Name:Hepatocyte, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12626
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typehepatocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberRNA1057
catalog numberSC5205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004984
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12626 CAGE DRX008309 DRR009181
Accession ID Hg19

Library idBAMCTSS
CNhs12626 DRZ000606 DRZ001991
Accession ID Hg38

Library idBAMCTSS
CNhs12626 DRZ011956 DRZ013341
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004984
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10066.ATGTCA sRNA-Seq DRX037268 DRR041634
Accession ID Hg19

Library idBAMCTSS
SRhi10066.ATGTCA DRZ007276


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.758
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.372
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.758
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.206
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.202
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0922
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.69
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.202
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.26
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.711
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.28
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.202
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.202
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.599
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.191
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.363
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0287
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.519
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.875
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.597
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.202
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas1.019
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.175
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12626

Jaspar motifP-value
MA0002.20.42
MA0003.10.0224
MA0004.10.797
MA0006.10.248
MA0007.10.00597
MA0009.10.413
MA0014.10.626
MA0017.13.0979e-25
MA0018.20.0177
MA0019.10.792
MA0024.10.0168
MA0025.10.741
MA0027.10.776
MA0028.10.00341
MA0029.10.756
MA0030.10.0161
MA0031.10.0607
MA0035.20.014
MA0038.10.497
MA0039.20.482
MA0040.10.62
MA0041.10.894
MA0042.10.751
MA0043.10.355
MA0046.11.327e-69
MA0047.24.63124e-5
MA0048.10.619
MA0050.10.859
MA0051.10.955
MA0052.10.858
MA0055.10.642
MA0057.10.196
MA0058.10.759
MA0059.10.46
MA0060.10.0262
MA0061.10.0116
MA0062.21.62359e-6
MA0065.28.17741e-13
MA0066.10.568
MA0067.10.0191
MA0068.10.0567
MA0069.10.207
MA0070.10.446
MA0071.10.265
MA0072.10.139
MA0073.10.895
MA0074.10.402
MA0076.11.72196e-4
MA0077.10.418
MA0078.10.775
MA0079.20.943
MA0080.23.25646e-5
MA0081.10.0277
MA0083.10.149
MA0084.10.903
MA0087.10.342
MA0088.10.362
MA0090.10.876
MA0091.10.911
MA0092.10.525
MA0093.10.776
MA0099.25.93952e-18
MA0100.10.154
MA0101.16.46738e-4
MA0102.20.286
MA0103.10.0599
MA0104.20.573
MA0105.10.0597
MA0106.10.71
MA0107.15.05165e-4
MA0108.20.0657
MA0111.10.867
MA0112.24.22876e-5
MA0113.10.0588
MA0114.11.22125e-28
MA0115.14.20168e-8
MA0116.10.00543
MA0117.10.457
MA0119.10.0514
MA0122.10.861
MA0124.10.98
MA0125.10.397
MA0131.10.334
MA0135.10.846
MA0136.11.15362e-4
MA0137.20.00135
MA0138.20.0654
MA0139.10.809
MA0140.10.564
MA0141.12.24522e-4
MA0142.10.199
MA0143.10.311
MA0144.10.00273
MA0145.10.362
MA0146.10.424
MA0147.10.798
MA0148.10.00266
MA0149.10.801
MA0150.10.0874
MA0152.16.06755e-4
MA0153.11.30752e-36
MA0154.10.287
MA0155.10.204
MA0156.15.53798e-4
MA0157.10.379
MA0159.11.91505e-4
MA0160.10.0147
MA0162.10.919
MA0163.10.311
MA0164.10.472
MA0258.10.00162
MA0259.10.323



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12626

Novel motifP-value
10.171
100.82
1000.246
1010.905
1020.0634
1030.319
1040.505
1050.43
1060.00392
1070.00587
1080.251
1090.902
110.403
1100.577
1110.307
1120.0129
1132.31647e-4
1140.15
1150.854
1160.35
1170.275
1180.314
1190.0079
120.57
1200.688
1210.903
1220.221
1230.796
1240.0803
1250.118
1260.553
1270.0896
1280.16
1290.727
130.0898
1300.0127
1310.981
1320.0556
1330.319
1340.775
1350.525
1360.0894
1370.299
1380.29
1390.962
140.631
1400.537
1410.136
1420.273
1430.00249
1440.445
1450.265
1460.47
1470.948
1480.175
1490.146
151
1500.891
1510.451
1520.949
1530.816
1540.406
1550.0485
1560.708
1570.469
1580.311
1590.0708
160.603
1600.503
1610.973
1620.589
1630.598
1640.378
1650.00189
1660.283
1670.492
1680.63
1690.001
170.447
180.639
190.00157
20.185
200.98
210.12
220.0783
230.0518
240.76
250.802
260.251
270.514
280.946
290.94
30.528
300.646
310.22
320.406
330.995
340.254
350.299
360.391
370.982
380.227
390.238
40.156
400.258
410.0829
420.977
430.253
440.00459
450.332
460.254
470.818
480.488
490.151
50.285
500.399
510.937
520.0419
530.846
540.509
550.829
560.891
570.968
580.253
590.215
60.619
600.0222
610.662
620.211
630.15
640.659
650.0753
660.0539
670.0742
680.936
690.99
70.101
700.98
710.265
720.662
730.962
740.888
750.565
760.329
770.0271
780.175
790.829
80.137
800.984
810.721
820.307
830.972
840.45
850.00756
860.763
870.0394
880.318
890.278
90.842
900.511
910.175
920.344
930.586
940.194
950.14
960.0451
970.92
980.957
990.0694



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12626


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000078 (human hepatocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)

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