FF:11684-122I1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004984 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004984 | ||
|accession_numbers=CAGE;DRX008309;DRR009181;DRZ000606;DRZ001991;DRZ011956;DRZ013341 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037268;DRR041634;DRZ007276 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000078 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.53!3358.64!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.81!643.96!SEBOX;;chr19:4153613..4153652,+!p1@CREB3L3!2.78!598.47!CREB3L3;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.49!305.44!SEBOX;;chr7:73038839..73038862,-!p1@MLXIPL!2.22!166.01!MLXIPL;;chr1:214161272..214161322,+!p1@PROX1!2.15!194.37!PROX1;;chr12:100867653..100867677,+!p2@NR1H4!2.10!125.25!NR1H4;;chr15:53082521..53082549,-!p1@ONECUT1!1.96!90.39!ONECUT1;;chr19:50432453..50432468,+!p1@ATF5!1.91!4196.38!ATF5;;chr20:43029862..43029900,+!p1@HNF4A!1.91!80.35!HNF4A;;chr12:100867627..100867652,+!p1@NR1H4!1.91!79.76!NR1H4;;chrX:131547625..131547644,-!p4@MBNL3!1.89!76.80!MBNL3;;chr1:27240455..27240474,-!p1@NR0B2!1.89!76.21!NR0B2;;chr4:174451370..174451387,-!p1@HAND2!1.77!58.49!HAND2;;chr1:199996733..199996781,+!p1@NR5A2!1.75!54.94!NR5A2;;chr14:38064429..38064486,-!p1@FOXA1!1.72!51.40!FOXA1;;chr17:53344945..53344977,+!p2@HLF!1.67!45.49!HLF;;chr1:161208013..161208038,-!p1@NR1I3!1.64!43.13!NR1I3;;chr19:33793430..33793447,-!p1@CEBPA!1.63!167.19!CEBPA;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.13!ZBTB16;;chrX:66763856..66763896,+!p1@AR!1.54!48.44!AR;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.52!32.49!PEG3;;chr1:151804244..151804310,-!p1@RORC!1.52!32.49!RORC;;chr19:50435736..50435781,+!p3@ATF5!1.51!42.54!ATF5;;chr17:53344980..53345011,+!p3@HLF!1.50!30.72!HLF;;chr16:79634624..79634642,-!p1@MAF!1.47!107.52!MAF;;chr6:391743..391759,+!p1@IRF4!1.47!28.36!IRF4;;chr8:76319876..76319926,+!p1@HNF4G!1.46!27.77!HNF4G;;chr8:71316428..71316459,-!p2@NCOA2!1.45!45.49!NCOA2;;chr12:100897130..100897149,+!p3@NR1H4!1.44!26.59!NR1H4;;chr7:73038867..73038878,-!p2@MLXIPL!1.43!25.99!MLXIPL;;chr11:113930291..113930339,+!p2@ZBTB16!1.42!40.76!ZBTB16;;chr19:4153719..4153730,+!p2@CREB3L3!1.42!25.40!CREB3L3;;chr3:126076242..126076257,-!p1@KLF15!1.40!29.54!KLF15;;chr21:39870339..39870443,-!p1@ERG!1.37!22.45!ERG;;chr16:85932760..85932775,+!p1@IRF8!1.36!21.86!IRF8;;chr1:201979743..201979762,+!p1@ELF3!1.34!20.68!ELF3;;chr12:100867736..100867750,+!p4@NR1H4!1.32!20.09!NR1H4;;chr22:29196492..29196503,-!p3@XBP1!1.31!30.13!XBP1;;chr20:62680984..62680999,-!p1@SOX18!1.31!25.40!SOX18;;chr8:11561684..11561751,+!p1@GATA4!1.31!19.50!GATA4;;chr17:26694801..26694812,-!p5@SEBOX!1.31!19.50!SEBOX;;chr17:15942934..15942957,-!p5@NCOR1!1.30!18.91!NCOR1;;chr19:46367576..46367592,+!p1@FOXA3!1.30!18.91!FOXA3;;chr6:151977801..151977813,+!p8@ESR1!1.30!18.91!ESR1;;chr15:61521495..61521506,-!p5@RORA!1.29!18.31!RORA;;chr2:238592039..238592054,+!p4@LRRFIP1!1.29!18.31!LRRFIP1;;chr1:61548225..61548299,+!p1@NFIA!1.28!232.18!NFIA;;chr1:199996702..199996732,+!p5@NR5A2!1.27!17.72!NR5A2;;chr1:214161358..214161377,+!p3@PROX1!1.26!17.13!PROX1;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.13!TCF21;;chr3:126073018..126073036,-!p3@KLF15!1.26!17.13!KLF15;;chr1:214161328..214161348,+!p2@PROX1!1.24!16.54!PROX1;;chr16:51185318..51185348,-!p2@SALL1!1.24!16.54!SALL1;;chr1:161207986..161207998,-!p2@NR1I3!1.23!15.95!NR1I3;;chr16:79634595..79634620,-!p2@MAF!1.22!28.36!MAF;;chr1:209979467..209979494,-!p1@IRF6!1.21!17.13!IRF6;;chr18:42277095..42277130,+!p8@SETBP1!1.21!15.36!SETBP1;;chr17:17726907..17726958,-!p2@SREBF1!1.20!90.98!SREBF1;;chr15:60884706..60884743,-!p1@RORA!1.18!73.26!RORA;;chr2:46524897..46524911,+!p2@EPAS1!1.18!39.58!EPAS1;;chr12:24715376..24715432,-!p1@SOX5!1.18!17.72!SOX5;;chr12:103351444..103351461,+!p1@ASCL1!1.18!14.18!ASCL1;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!14.18!ONECUT2;;chr7:113726357..113726443,+!p1@FOXP2!1.17!23.63!FOXP2;;chr17:53342311..53342400,+!p1@HLF!1.17!15.95!HLF;;chr11:47400078..47400106,-!p1@SPI1!1.16!13.59!SPI1;;chr17:26694979..26695007,-!p4@SEBOX!1.15!13.00!SEBOX;;chrX:131547596..131547609,-!p10@MBNL3!1.15!13.00!MBNL3;;chr8:71316403..71316427,-!p6@NCOA2!1.14!15.36!NCOA2;;chr7:97840743..97840786,+!p1@BHLHA15!1.13!12.41!BHLHA15;;chr11:113930401..113930422,+!p3@ZBTB16!1.13!12.41!ZBTB16;;chr19:50435673..50435690,+!p8@ATF5!1.13!12.41!ATF5;;chr17:80477099..80477123,+!p10@FOXK2!1.13!12.41!FOXK2;;chr6:91006518..91006570,-!p1@BACH2!1.12!27.77!BACH2;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.82!ONECUT2;;chr1:200011711..200011752,+!p3@NR5A2!1.11!11.82!NR5A2;;chr20:43030002..43030028,+!p3@HNF4A!1.11!11.82!HNF4A;;chr20:51588873..51588953,+!p1@TSHZ2!1.10!15.36!TSHZ2;;chr3:39195037..39195069,-!p2@CSRNP1!1.09!70.30!CSRNP1;;chr8:55370487..55370503,+!p1@SOX17!1.09!11.23!SOX17;;chr13:41240717..41240735,-!p2@FOXO1!1.08!75.62!FOXO1;;chr10:94449703..94449718,+!p1@HHEX!1.08!42.54!HHEX;;chr6:1312325..1312340,+!p1@FOXQ1!1.07!17.72!FOXQ1;;chr18:6414884..6414942,-!p1@L3MBTL4!1.07!13.59!L3MBTL4;;chr3:126076264..126076305,-!p2@KLF15!1.06!14.77!KLF15;;chr3:114819124..114819200,-!p3@ZBTB20!1.04!23.63!ZBTB20;;chr22:46546494..46546525,+!p2@PPARA!1.04!19.50!PPARA;;chr2:68592406..68592424,+!p1@PLEK!1.04!10.04!PLEK;;chr20:51589133..51589159,+!p2@TSHZ2!1.04!10.04!TSHZ2;;chr1:201979703..201979721,+!p2@ELF3!1.02!9.45!ELF3;;chr17:26694940..266949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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 34: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11684-122I1 | |id=FF:11684-122I1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000078 | ||
|is_obsolete= | |||
|library_id=CNhs12626 | |||
|library_id_phase_based=2:CNhs12626 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11684 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.ATGTCA.11684 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11684 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.ATGTCA.11684 | |||
|name=Hepatocyte, donor3 | |name=Hepatocyte, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 41: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12626,LSID952,release012,COMPLETED | |profile_hcage=CNhs12626,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC5205 | |rna_catalog_number=SC5205 | ||
| Line 55: | Line 82: | ||
|rna_tube_id=122I1 | |rna_tube_id=122I1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10066.ATGTCA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 68: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.61417339190854e-249!GO:0005737;cytoplasm;2.24505609798253e-222!GO:0044444;cytoplasmic part;6.86549519722482e-192!GO:0043227;membrane-bound organelle;1.41909850369781e-124!GO:0043231;intracellular membrane-bound organelle;1.41909850369781e-124!GO:0043226;organelle;1.14995806077106e-114!GO:0043229;intracellular organelle;1.9614215074388e-114!GO:0005739;mitochondrion;7.74931483645299e-102!GO:0044422;organelle part;1.28776220369132e-99!GO:0044446;intracellular organelle part;3.84395281437554e-98!GO:0031090;organelle membrane;1.55537144704461e-73!GO:0044237;cellular metabolic process;5.6164014268413e-69!GO:0044429;mitochondrial part;1.08861153367527e-64!GO:0044238;primary metabolic process;3.14917351001658e-64!GO:0009058;biosynthetic process;4.805243579174e-59!GO:0032991;macromolecular complex;3.90339794426591e-56!GO:0030529;ribonucleoprotein complex;1.88073264813147e-55!GO:0043233;organelle lumen;1.7030093406015e-54!GO:0031974;membrane-enclosed lumen;1.7030093406015e-54!GO:0044249;cellular biosynthetic process;8.52444800541383e-50!GO:0005783;endoplasmic reticulum;1.96865363536016e-47!GO:0031967;organelle envelope;1.26845770259825e-46!GO:0031975;envelope;3.82211269099853e-46!GO:0005515;protein binding;8.36760932795838e-46!GO:0019538;protein metabolic process;5.49459273969683e-44!GO:0003723;RNA binding;5.08102467140819e-42!GO:0016491;oxidoreductase activity;1.05927099301774e-40!GO:0044260;cellular macromolecule metabolic process;1.37453484523211e-40!GO:0005740;mitochondrial envelope;1.44773618999054e-39!GO:0044267;cellular protein metabolic process;8.61573975805618e-39!GO:0031966;mitochondrial membrane;1.87444355339439e-38!GO:0005829;cytosol;2.01209037512274e-38!GO:0019866;organelle inner membrane;1.285357315493e-37!GO:0044432;endoplasmic reticulum part;3.65881592798167e-37!GO:0005840;ribosome;8.47331546985209e-37!GO:0005743;mitochondrial inner membrane;8.52295237323049e-37!GO:0006082;organic acid metabolic process;9.02952871290286e-37!GO:0009059;macromolecule biosynthetic process;3.58972702661687e-36!GO:0006412;translation;4.36235468527569e-36!GO:0019752;carboxylic acid metabolic process;9.10752848909276e-36!GO:0033036;macromolecule localization;1.97896768614209e-35!GO:0015031;protein transport;4.08135940877517e-35!GO:0043170;macromolecule metabolic process;4.75440496325341e-34!GO:0045184;establishment of protein localization;1.20313019561665e-33!GO:0008104;protein localization;4.63340808705447e-33!GO:0031980;mitochondrial lumen;9.74786199414255e-33!GO:0005759;mitochondrial matrix;9.74786199414255e-33!GO:0012505;endomembrane system;2.35327054423695e-32!GO:0044428;nuclear part;3.89351413309018e-31!GO:0005789;endoplasmic reticulum membrane;6.93247150558989e-31!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.89555015448385e-31!GO:0044248;cellular catabolic process;9.40379577359302e-31!GO:0003735;structural constituent of ribosome;1.05388681409121e-30!GO:0046907;intracellular transport;1.63234020068454e-28!GO:0033279;ribosomal subunit;3.58794162115249e-27!GO:0006091;generation of precursor metabolites and energy;7.40949403288758e-27!GO:0006396;RNA processing;8.48026652658944e-27!GO:0043234;protein complex;1.29787750008476e-26!GO:0016043;cellular component organization and biogenesis;6.41526144581796e-26!GO:0006886;intracellular protein transport;1.27221589964904e-25!GO:0044255;cellular lipid metabolic process;4.79629669765772e-24!GO:0016071;mRNA metabolic process;7.18652179430247e-24!GO:0006629;lipid metabolic process;1.12261621710821e-23!GO:0009055;electron carrier activity;1.3206469524748e-22!GO:0009056;catabolic process;2.96383757532351e-22!GO:0008380;RNA splicing;3.95702963602638e-22!GO:0051186;cofactor metabolic process;2.38283191929444e-21!GO:0006397;mRNA processing;8.10077169283104e-20!GO:0006119;oxidative phosphorylation;2.22679978353929e-19!GO:0031981;nuclear lumen;4.93619650912376e-19!GO:0044455;mitochondrial membrane part;8.84091778652033e-19!GO:0051649;establishment of cellular localization;1.17112702937056e-18!GO:0051641;cellular localization;1.59548387205859e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.89242871773227e-18!GO:0048037;cofactor binding;3.20890304770216e-18!GO:0032787;monocarboxylic acid metabolic process;7.16001421390222e-18!GO:0006732;coenzyme metabolic process;8.4626524160195e-18!GO:0006807;nitrogen compound metabolic process;8.81139571077649e-18!GO:0006118;electron transport;9.76002227016358e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.92608921437172e-17!GO:0044265;cellular macromolecule catabolic process;5.10704679191637e-17!GO:0065003;macromolecular complex assembly;7.54500029513442e-17!GO:0016874;ligase activity;1.2877298770166e-16!GO:0005746;mitochondrial respiratory chain;1.56878466287151e-16!GO:0006950;response to stress;1.56878466287151e-16!GO:0006457;protein folding;2.33678394190467e-16!GO:0005681;spliceosome;1.52588504343021e-15!GO:0009308;amine metabolic process;2.51216024820237e-15!GO:0002526;acute inflammatory response;2.61723746608657e-15!GO:0006066;alcohol metabolic process;2.85366451902046e-15!GO:0006520;amino acid metabolic process;2.9108911253144e-15!GO:0015935;small ribosomal subunit;8.46916755154395e-15!GO:0000166;nucleotide binding;1.09100467585523e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.15633516179293e-14!GO:0044445;cytosolic part;1.39228751119888e-14!GO:0022607;cellular component assembly;1.62296464443461e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.15534333738677e-14!GO:0003954;NADH dehydrogenase activity;2.15534333738677e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.15534333738677e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.55281342248797e-14!GO:0050662;coenzyme binding;6.21873639028451e-14!GO:0006519;amino acid and derivative metabolic process;6.98491955251811e-14!GO:0005794;Golgi apparatus;7.42047512887831e-14!GO:0019941;modification-dependent protein catabolic process;1.2098532863462e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.2098532863462e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.22535613216533e-13!GO:0044257;cellular protein catabolic process;1.27052461165311e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.41718305752207e-13!GO:0009057;macromolecule catabolic process;1.46269520494353e-13!GO:0006605;protein targeting;1.96213870737425e-13!GO:0015934;large ribosomal subunit;2.36410639485435e-13!GO:0048770;pigment granule;2.99156498231922e-13!GO:0042470;melanosome;2.99156498231922e-13!GO:0016192;vesicle-mediated transport;3.59932743439203e-13!GO:0051082;unfolded protein binding;3.74329389650201e-13!GO:0008202;steroid metabolic process;1.08428842370974e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.27436930343472e-12!GO:0045271;respiratory chain complex I;1.27436930343472e-12!GO:0005747;mitochondrial respiratory chain complex I;1.27436930343472e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.31819585921558e-12!GO:0042773;ATP synthesis coupled electron transport;1.31819585921558e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.61057211754654e-12!GO:0022618;protein-RNA complex assembly;1.79823808793363e-12!GO:0005793;ER-Golgi intermediate compartment;1.81795096216321e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.00237770412474e-12!GO:0044262;cellular carbohydrate metabolic process;2.14519728852984e-12!GO:0016462;pyrophosphatase activity;2.40478011210749e-12!GO:0016125;sterol metabolic process;2.76724490998754e-12!GO:0043285;biopolymer catabolic process;3.18228481942031e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.65984119639654e-12!GO:0008610;lipid biosynthetic process;7.72088848879424e-12!GO:0005761;mitochondrial ribosome;7.84781324340111e-12!GO:0000313;organellar ribosome;7.84781324340111e-12!GO:0008134;transcription factor binding;8.59704824429602e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.08470504736705e-11!GO:0017111;nucleoside-triphosphatase activity;1.1634579246993e-11!GO:0005654;nucleoplasm;1.8149662412133e-11!GO:0008135;translation factor activity, nucleic acid binding;3.34462701985439e-11!GO:0002541;activation of plasma proteins during acute inflammatory response;5.59925272414773e-11!GO:0006956;complement activation;5.59925272414773e-11!GO:0006631;fatty acid metabolic process;6.99358076937554e-11!GO:0048193;Golgi vesicle transport;7.57191889223475e-11!GO:0008203;cholesterol metabolic process;8.20468658971756e-11!GO:0006958;complement activation, classical pathway;1.04289723353051e-10!GO:0005792;microsome;1.5276516699405e-10!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;1.92478766378344e-10!GO:0042598;vesicular fraction;2.06745992914565e-10!GO:0030163;protein catabolic process;2.54373692024216e-10!GO:0017076;purine nucleotide binding;2.7982879649949e-10!GO:0005777;peroxisome;2.83088191513493e-10!GO:0042579;microbody;2.83088191513493e-10!GO:0002455;humoral immune response mediated by circulating immunoglobulin;3.84520283330121e-10!GO:0008219;cell death;3.9995317398918e-10!GO:0016265;death;3.9995317398918e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.80497016205896e-10!GO:0005634;nucleus;7.90498473105638e-10!GO:0016787;hydrolase activity;8.19168666652409e-10!GO:0044451;nucleoplasm part;9.91162056334157e-10!GO:0006915;apoptosis;1.08043782131806e-09!GO:0012501;programmed cell death;1.08043782131806e-09!GO:0009063;amino acid catabolic process;1.10040537341447e-09!GO:0051188;cofactor biosynthetic process;1.21941732510883e-09!GO:0044270;nitrogen compound catabolic process;1.55852027102529e-09!GO:0006996;organelle organization and biogenesis;1.91621530208412e-09!GO:0005730;nucleolus;2.3474127607186e-09!GO:0006913;nucleocytoplasmic transport;2.86749760598218e-09!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;3.6290172830911e-09!GO:0006446;regulation of translational initiation;4.24919300323036e-09!GO:0051169;nuclear transport;5.53296572789503e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.54461423047816e-09!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;9.28812926385873e-09!GO:0009310;amine catabolic process;9.89954617405145e-09!GO:0005773;vacuole;9.98741143174359e-09!GO:0016126;sterol biosynthetic process;1.26663647785444e-08!GO:0006512;ubiquitin cycle;1.31597325782578e-08!GO:0006413;translational initiation;1.76009342441155e-08!GO:0045333;cellular respiration;1.9250509548788e-08!GO:0005768;endosome;2.04645884411903e-08!GO:0009060;aerobic respiration;2.33155430841456e-08!GO:0006869;lipid transport;2.49463541860133e-08!GO:0015980;energy derivation by oxidation of organic compounds;2.55434704391499e-08!GO:0046930;pore complex;2.74684926305168e-08!GO:0051187;cofactor catabolic process;3.36074334494106e-08!GO:0005635;nuclear envelope;3.36633440404946e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.66807837391165e-08!GO:0005975;carbohydrate metabolic process;4.0139344222385e-08!GO:0008565;protein transporter activity;4.88488314347316e-08!GO:0000323;lytic vacuole;5.91250297488584e-08!GO:0005764;lysosome;5.91250297488584e-08!GO:0003743;translation initiation factor activity;7.13751624106363e-08!GO:0032553;ribonucleotide binding;7.80923861909344e-08!GO:0032555;purine ribonucleotide binding;7.80923861909344e-08!GO:0009108;coenzyme biosynthetic process;8.2722796040128e-08!GO:0006084;acetyl-CoA metabolic process;8.3441265743367e-08!GO:0016604;nuclear body;9.95962988482642e-08!GO:0006695;cholesterol biosynthetic process;1.002455095744e-07!GO:0006461;protein complex assembly;1.0229701482109e-07!GO:0017038;protein import;1.11652557110831e-07!GO:0043412;biopolymer modification;1.3997837126864e-07!GO:0030554;adenyl nucleotide binding;1.53063768237165e-07!GO:0016829;lyase activity;1.5455224056497e-07!GO:0005506;iron ion binding;1.59625574344974e-07!GO:0046483;heterocycle metabolic process;1.73077313823262e-07!GO:0031982;vesicle;1.88298059684357e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.04642091559917e-07!GO:0000375;RNA splicing, via transesterification reactions;2.04642091559917e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.04642091559917e-07!GO:0016740;transferase activity;2.04676849482168e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.11525603869065e-07!GO:0005319;lipid transporter activity;2.19020038963518e-07!GO:0006099;tricarboxylic acid cycle;2.29435590073786e-07!GO:0046356;acetyl-CoA catabolic process;2.29435590073786e-07!GO:0031988;membrane-bound vesicle;2.40055875831211e-07!GO:0016607;nuclear speck;2.67079488903944e-07!GO:0006694;steroid biosynthetic process;2.71406554350521e-07!GO:0031965;nuclear membrane;2.9721010581918e-07!GO:0031410;cytoplasmic vesicle;3.33683821904833e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.89116119088629e-07!GO:0009109;coenzyme catabolic process;4.30352091062442e-07!GO:0005996;monosaccharide metabolic process;4.77363476512648e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.84831396753327e-07!GO:0019829;cation-transporting ATPase activity;5.75995406945928e-07!GO:0005788;endoplasmic reticulum lumen;8.14672220972628e-07!GO:0019439;aromatic compound catabolic process;8.94797042955944e-07!GO:0019842;vitamin binding;1.01298839043058e-06!GO:0003712;transcription cofactor activity;1.06642843906802e-06!GO:0006006;glucose metabolic process;1.14758604002003e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.17382120803882e-06!GO:0008652;amino acid biosynthetic process;1.21930949829265e-06!GO:0006464;protein modification process;1.21930949829265e-06!GO:0019318;hexose metabolic process;1.21930949829265e-06!GO:0048523;negative regulation of cellular process;1.26202568130898e-06!GO:0016853;isomerase activity;1.36910477387398e-06!GO:0016887;ATPase activity;1.56807853764006e-06!GO:0010467;gene expression;1.63980569346627e-06!GO:0000096;sulfur amino acid metabolic process;1.66313364678864e-06!GO:0008639;small protein conjugating enzyme activity;1.88421395610547e-06!GO:0006752;group transfer coenzyme metabolic process;2.07644082563171e-06!GO:0065002;intracellular protein transport across a membrane;2.3455126359762e-06!GO:0015986;ATP synthesis coupled proton transport;2.36735783700982e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.36735783700982e-06!GO:0004842;ubiquitin-protein ligase activity;2.87954854276489e-06!GO:0044453;nuclear membrane part;4.0947067137602e-06!GO:0042254;ribosome biogenesis and assembly;6.09312672076118e-06!GO:0043069;negative regulation of programmed cell death;6.09312672076118e-06!GO:0048519;negative regulation of biological process;6.09312672076118e-06!GO:0006957;complement activation, alternative pathway;7.00462083505592e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.04396997918573e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.29338040255133e-06!GO:0004812;aminoacyl-tRNA ligase activity;7.29338040255133e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.29338040255133e-06!GO:0043066;negative regulation of apoptosis;7.90455634404848e-06!GO:0043283;biopolymer metabolic process;8.18964872115206e-06!GO:0030120;vesicle coat;8.47637481138915e-06!GO:0030662;coated vesicle membrane;8.47637481138915e-06!GO:0009259;ribonucleotide metabolic process;9.04582500715872e-06!GO:0002253;activation of immune response;9.40967633585647e-06!GO:0016044;membrane organization and biogenesis;1.15740304192343e-05!GO:0045259;proton-transporting ATP synthase complex;1.18126701188723e-05!GO:0019899;enzyme binding;1.20420245075883e-05!GO:0005770;late endosome;1.2698266664806e-05!GO:0043038;amino acid activation;1.41223675341827e-05!GO:0006418;tRNA aminoacylation for protein translation;1.41223675341827e-05!GO:0043039;tRNA aminoacylation;1.41223675341827e-05!GO:0042157;lipoprotein metabolic process;1.46338648882206e-05!GO:0051246;regulation of protein metabolic process;1.5208207995882e-05!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;1.54440341326162e-05!GO:0042981;regulation of apoptosis;1.6404837946264e-05!GO:0006790;sulfur metabolic process;1.66332103202974e-05!GO:0006979;response to oxidative stress;1.68613429967548e-05!GO:0042623;ATPase activity, coupled;1.79712219661952e-05!GO:0044431;Golgi apparatus part;1.97302827696344e-05!GO:0005643;nuclear pore;1.97386308134595e-05!GO:0005524;ATP binding;2.0366786489678e-05!GO:0019867;outer membrane;2.03931171006854e-05!GO:0032559;adenyl ribonucleotide binding;2.12381454209173e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.14145693856728e-05!GO:0006163;purine nucleotide metabolic process;2.20599639905925e-05!GO:0044440;endosomal part;2.22889333783278e-05!GO:0010008;endosome membrane;2.22889333783278e-05!GO:0019787;small conjugating protein ligase activity;2.30073222748951e-05!GO:0031968;organelle outer membrane;2.37543574007475e-05!GO:0051789;response to protein stimulus;2.39564434027149e-05!GO:0006986;response to unfolded protein;2.39564434027149e-05!GO:0006953;acute-phase response;2.4126910651704e-05!GO:0016064;immunoglobulin mediated immune response;2.41625303092388e-05!GO:0043067;regulation of programmed cell death;2.4324531523376e-05!GO:0009611;response to wounding;2.4324531523376e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.4324531523376e-05!GO:0005741;mitochondrial outer membrane;2.95084126676373e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.15630459523019e-05!GO:0004298;threonine endopeptidase activity;3.212061202745e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.25687630235353e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.25687630235353e-05!GO:0050660;FAD binding;3.29290170669029e-05!GO:0009260;ribonucleotide biosynthetic process;3.50528671939119e-05!GO:0006399;tRNA metabolic process;3.56313438721096e-05!GO:0006613;cotranslational protein targeting to membrane;3.58063609713459e-05!GO:0043687;post-translational protein modification;3.59445084967318e-05!GO:0006754;ATP biosynthetic process;3.74191335327062e-05!GO:0006753;nucleoside phosphate metabolic process;3.74191335327062e-05!GO:0006164;purine nucleotide biosynthetic process;3.75993585499346e-05!GO:0009199;ribonucleoside triphosphate metabolic process;3.83551331694826e-05!GO:0008654;phospholipid biosynthetic process;3.8927773936129e-05!GO:0005791;rough endoplasmic reticulum;3.9744251178298e-05!GO:0015918;sterol transport;4.69277224815647e-05!GO:0030301;cholesterol transport;4.69277224815647e-05!GO:0007005;mitochondrion organization and biogenesis;4.7456978011152e-05!GO:0007596;blood coagulation;5.27050983454929e-05!GO:0006725;aromatic compound metabolic process;5.33029335751826e-05!GO:0051170;nuclear import;5.4817874503125e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.872989926704e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.872989926704e-05!GO:0007599;hemostasis;5.872989926704e-05!GO:0050657;nucleic acid transport;5.872989926704e-05!GO:0051236;establishment of RNA localization;5.872989926704e-05!GO:0050658;RNA transport;5.872989926704e-05!GO:0019724;B cell mediated immunity;5.92466941946095e-05!GO:0046034;ATP metabolic process;6.01414808947754e-05!GO:0003924;GTPase activity;6.15034904510571e-05!GO:0009074;aromatic amino acid family catabolic process;6.27253763835091e-05!GO:0009069;serine family amino acid metabolic process;6.49739083131557e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.5841701570002e-05!GO:0009144;purine nucleoside triphosphate metabolic process;6.5841701570002e-05!GO:0009150;purine ribonucleotide metabolic process;7.56534537507926e-05!GO:0048471;perinuclear region of cytoplasm;7.6670942688309e-05!GO:0016881;acid-amino acid ligase activity;7.66771897887651e-05!GO:0006606;protein import into nucleus;7.66771897887651e-05!GO:0016469;proton-transporting two-sector ATPase complex;7.79364171891857e-05!GO:0009141;nucleoside triphosphate metabolic process;7.94162836476574e-05!GO:0000097;sulfur amino acid biosynthetic process;8.32545857628363e-05!GO:0005525;GTP binding;8.89305982451791e-05!GO:0043228;non-membrane-bound organelle;9.04036544384066e-05!GO:0043232;intracellular non-membrane-bound organelle;9.04036544384066e-05!GO:0050817;coagulation;9.13190117416888e-05!GO:0019395;fatty acid oxidation;9.18208420842617e-05!GO:0051540;metal cluster binding;9.38516091094525e-05!GO:0051536;iron-sulfur cluster binding;9.38516091094525e-05!GO:0006403;RNA localization;9.49882359014209e-05!GO:0003714;transcription corepressor activity;0.000104073561047911!GO:0048475;coated membrane;0.000109322220977276!GO:0030117;membrane coat;0.000109322220977276!GO:0051287;NAD binding;0.000118299401871269!GO:0005762;mitochondrial large ribosomal subunit;0.000124575065450645!GO:0000315;organellar large ribosomal subunit;0.000124575065450645!GO:0009152;purine ribonucleotide biosynthetic process;0.000130325166456846!GO:0045454;cell redox homeostasis;0.000133551460220007!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000133551460220007!GO:0005579;membrane attack complex;0.000147012146751705!GO:0006518;peptide metabolic process;0.000147679774623418!GO:0030532;small nuclear ribonucleoprotein complex;0.000148571148033802!GO:0006612;protein targeting to membrane;0.000163412036789339!GO:0031960;response to corticosteroid stimulus;0.000163454430736805!GO:0006366;transcription from RNA polymerase II promoter;0.000163902161062265!GO:0016564;transcription repressor activity;0.000172622275809656!GO:0016769;transferase activity, transferring nitrogenous groups;0.000174311386248971!GO:0031252;leading edge;0.000175592665074039!GO:0030170;pyridoxal phosphate binding;0.000190551185964574!GO:0006635;fatty acid beta-oxidation;0.000193459125308669!GO:0030867;rough endoplasmic reticulum membrane;0.000199047468011368!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000202494552383424!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000206722672733091!GO:0015399;primary active transmembrane transporter activity;0.000206722672733091!GO:0006810;transport;0.000236114662720619!GO:0009064;glutamine family amino acid metabolic process;0.000243438906009876!GO:0009117;nucleotide metabolic process;0.000250016609167851!GO:0022890;inorganic cation transmembrane transporter activity;0.000251564358133042!GO:0016705;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;0.000257422576497492!GO:0031324;negative regulation of cellular metabolic process;0.000261585612367828!GO:0006916;anti-apoptosis;0.000263662970343733!GO:0016830;carbon-carbon lyase activity;0.000275667217483307!GO:0046364;monosaccharide biosynthetic process;0.000292695401113198!GO:0046165;alcohol biosynthetic process;0.000292695401113198!GO:0005798;Golgi-associated vesicle;0.000296666850927518!GO:0006897;endocytosis;0.000297577157344222!GO:0010324;membrane invagination;0.000297577157344222!GO:0006558;L-phenylalanine metabolic process;0.000312487277518866!GO:0006559;L-phenylalanine catabolic process;0.000312487277518866!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000314568695065935!GO:0008361;regulation of cell size;0.00033411349283197!GO:0008286;insulin receptor signaling pathway;0.000359851279468907!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.000375942418459865!GO:0016049;cell growth;0.000393155143230449!GO:0032446;protein modification by small protein conjugation;0.000412927618098974!GO:0006793;phosphorus metabolic process;0.000419161165049462!GO:0006796;phosphate metabolic process;0.000419161165049462!GO:0044272;sulfur compound biosynthetic process;0.000420881138039361!GO:0042802;identical protein binding;0.000420881138039361!GO:0008483;transaminase activity;0.000423731610818269!GO:0000314;organellar small ribosomal subunit;0.000432329997358626!GO:0005763;mitochondrial small ribosomal subunit;0.000432329997358626!GO:0009719;response to endogenous stimulus;0.000439790244581047!GO:0000139;Golgi membrane;0.000466742272714102!GO:0051384;response to glucocorticoid stimulus;0.000494976639583557!GO:0051028;mRNA transport;0.000499304753549564!GO:0001889;liver development;0.000504102785424615!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000507605427531869!GO:0042060;wound healing;0.000524165732751405!GO:0032561;guanyl ribonucleotide binding;0.00055862998589401!GO:0019001;guanyl nucleotide binding;0.00055862998589401!GO:0019319;hexose biosynthetic process;0.000594317880057801!GO:0000245;spliceosome assembly;0.000610978372044337!GO:0016567;protein ubiquitination;0.000614431788337152!GO:0004386;helicase activity;0.000617470321497691!GO:0006259;DNA metabolic process;0.000617525419434757!GO:0006508;proteolysis;0.000618657793459202!GO:0008026;ATP-dependent helicase activity;0.00063032561904441!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000631028370309015!GO:0016746;transferase activity, transferring acyl groups;0.000631264905073226!GO:0007243;protein kinase cascade;0.000649247499789997!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000650050710369827!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000709312394555059!GO:0051234;establishment of localization;0.000743955919500986!GO:0009066;aspartate family amino acid metabolic process;0.000789800778977231!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.000789800778977231!GO:0043021;ribonucleoprotein binding;0.000794991083038819!GO:0006879;cellular iron ion homeostasis;0.00079889472226327!GO:0055072;iron ion homeostasis;0.00079889472226327!GO:0001558;regulation of cell growth;0.000808721252763101!GO:0046983;protein dimerization activity;0.000826010839072676!GO:0015036;disulfide oxidoreductase activity;0.000841268434616005!GO:0000151;ubiquitin ligase complex;0.000851280997410796!GO:0044438;microbody part;0.000870773220950084!GO:0044439;peroxisomal part;0.000870773220950084!GO:0051179;localization;0.000872351262045485!GO:0043681;protein import into mitochondrion;0.000932855961706772!GO:0032934;sterol binding;0.000969171814835515!GO:0033116;ER-Golgi intermediate compartment membrane;0.000969760499530874!GO:0051920;peroxiredoxin activity;0.000983580721343216!GO:0004576;oligosaccharyl transferase activity;0.00103106693415376!GO:0043566;structure-specific DNA binding;0.00103734420926353!GO:0003724;RNA helicase activity;0.00103734420926353!GO:0006364;rRNA processing;0.00105025859565734!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00111620441575806!GO:0015248;sterol transporter activity;0.00112594083370704!GO:0043492;ATPase activity, coupled to movement of substances;0.00114795228558434!GO:0031970;organelle envelope lumen;0.00115228000610502!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00121473347075956!GO:0005758;mitochondrial intermembrane space;0.00122954658099153!GO:0009892;negative regulation of metabolic process;0.00124179897112371!GO:0010033;response to organic substance;0.00131504744524329!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00132668271113337!GO:0009991;response to extracellular stimulus;0.00132668271113337!GO:0008415;acyltransferase activity;0.00135690674352586!GO:0030133;transport vesicle;0.00144957256359072!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00145479234540151!GO:0046870;cadmium ion binding;0.0015141956828954!GO:0051539;4 iron, 4 sulfur cluster binding;0.00151845982275647!GO:0042221;response to chemical stimulus;0.00151845982275647!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00154924173065472!GO:0006749;glutathione metabolic process;0.00155722571162127!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00158150610265774!GO:0010035;response to inorganic substance;0.00167199061235741!GO:0016072;rRNA metabolic process;0.00170897492321207!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00171721927919041!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00171721927919041!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00171721927919041!GO:0008250;oligosaccharyl transferase complex;0.0017333982318454!GO:0016408;C-acyltransferase activity;0.00181300673124708!GO:0006767;water-soluble vitamin metabolic process;0.00183310487006351!GO:0043284;biopolymer biosynthetic process;0.00183310487006351!GO:0030569;chymotrypsin inhibitor activity;0.00185875824681364!GO:0031903;microbody membrane;0.0018607701157455!GO:0005778;peroxisomal membrane;0.0018607701157455!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00189367376403464!GO:0019438;aromatic compound biosynthetic process;0.00202393983706983!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00212283684658318!GO:0006090;pyruvate metabolic process;0.00215753979846361!GO:0030176;integral to endoplasmic reticulum membrane;0.00218064645347009!GO:0019843;rRNA binding;0.00223622432856566!GO:0051427;hormone receptor binding;0.00238100566290672!GO:0009309;amine biosynthetic process;0.00239282780672885!GO:0005048;signal sequence binding;0.00246055533658792!GO:0005507;copper ion binding;0.0026493768006693!GO:0006487;protein amino acid N-linked glycosylation;0.0026742883453537!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.00275358186189096!GO:0003729;mRNA binding;0.00276457488805913!GO:0006525;arginine metabolic process;0.00281154723918266!GO:0016645;oxidoreductase activity, acting on the CH-NH group of donors;0.00286620596608344!GO:0030134;ER to Golgi transport vesicle;0.00293505538270541!GO:0006720;isoprenoid metabolic process;0.00297331296170664!GO:0003995;acyl-CoA dehydrogenase activity;0.00304163650531394!GO:0016885;ligase activity, forming carbon-carbon bonds;0.00310298749495358!GO:0007040;lysosome organization and biogenesis;0.00313246586025287!GO:0016197;endosome transport;0.00314450018419463!GO:0004177;aminopeptidase activity;0.00322598884825503!GO:0016859;cis-trans isomerase activity;0.0032383025682934!GO:0004300;enoyl-CoA hydratase activity;0.00325949760451183!GO:0042627;chylomicron;0.00329527568288796!GO:0015923;mannosidase activity;0.00330904260056876!GO:0015485;cholesterol binding;0.00332649634301328!GO:0006778;porphyrin metabolic process;0.00336915414387052!GO:0033013;tetrapyrrole metabolic process;0.00336915414387052!GO:0043623;cellular protein complex assembly;0.00337658665218043!GO:0006766;vitamin metabolic process;0.0034558722133454!GO:0051168;nuclear export;0.0034558722133454!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00354090148782215!GO:0006094;gluconeogenesis;0.00354090148782215!GO:0006626;protein targeting to mitochondrion;0.00355214084303326!GO:0005905;coated pit;0.00355613881935475!GO:0009081;branched chain family amino acid metabolic process;0.00358800698321847!GO:0016310;phosphorylation;0.00364298564420661!GO:0051537;2 iron, 2 sulfur cluster binding;0.00365013811259497!GO:0016860;intramolecular oxidoreductase activity;0.00365907188434462!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00373483038654423!GO:0044271;nitrogen compound biosynthetic process;0.00379220678508656!GO:0003690;double-stranded DNA binding;0.00390558915033567!GO:0007264;small GTPase mediated signal transduction;0.00399398684227496!GO:0008092;cytoskeletal protein binding;0.00401840460630933!GO:0018196;peptidyl-asparagine modification;0.004102575460665!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.004102575460665!GO:0030127;COPII vesicle coat;0.00411577163359394!GO:0012507;ER to Golgi transport vesicle membrane;0.00411577163359394!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00411577163359394!GO:0035257;nuclear hormone receptor binding;0.00411577163359394!GO:0046394;carboxylic acid biosynthetic process;0.00411577163359394!GO:0016053;organic acid biosynthetic process;0.00411577163359394!GO:0006650;glycerophospholipid metabolic process;0.00422322685953087!GO:0003713;transcription coactivator activity;0.00424716820479293!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00432807323428761!GO:0005577;fibrinogen complex;0.0043872843756071!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00457889775038714!GO:0031667;response to nutrient levels;0.00482879044758536!GO:0003746;translation elongation factor activity;0.0048835346500579!GO:0016741;transferase activity, transferring one-carbon groups;0.00501044300479278!GO:0048500;signal recognition particle;0.00504614055671061!GO:0005885;Arp2/3 protein complex;0.00510394412448861!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00525418516615327!GO:0006414;translational elongation;0.00525418516615327!GO:0009165;nucleotide biosynthetic process;0.00537606634765931!GO:0000041;transition metal ion transport;0.00537606634765931!GO:0000267;cell fraction;0.00552368517482877!GO:0055088;lipid homeostasis;0.00559774036153076!GO:0006959;humoral immune response;0.00568359165499128!GO:0017127;cholesterol transporter activity;0.00580399031185891!GO:0016051;carbohydrate biosynthetic process;0.00582351878940101!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00585179151187015!GO:0003697;single-stranded DNA binding;0.00592856138147742!GO:0005769;early endosome;0.00598400452297301!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00598400452297301!GO:0051659;maintenance of mitochondrion localization;0.00616312797308272!GO:0051657;maintenance of organelle localization;0.00616312797308272!GO:0042559;pteridine and derivative biosynthetic process;0.00622555615743556!GO:0016779;nucleotidyltransferase activity;0.00672988245307163!GO:0009112;nucleobase metabolic process;0.00693298292405142!GO:0006555;methionine metabolic process;0.00693298292405142!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00693298292405142!GO:0015002;heme-copper terminal oxidase activity;0.00693298292405142!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00693298292405142!GO:0004129;cytochrome-c oxidase activity;0.00693298292405142!GO:0001666;response to hypoxia;0.0070044016106693!GO:0008299;isoprenoid biosynthetic process;0.0070044016106693!GO:0005774;vacuolar membrane;0.00707191433442996!GO:0042558;pteridine and derivative metabolic process;0.0072255186241808!GO:0045947;negative regulation of translational initiation;0.00744550062303431!GO:0006644;phospholipid metabolic process;0.00750824273502642!GO:0030132;clathrin coat of coated pit;0.00762620700926575!GO:0015035;protein disulfide oxidoreductase activity;0.00782487108643339!GO:0009083;branched chain family amino acid catabolic process;0.00788150654822125!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00806464646476637!GO:0042168;heme metabolic process;0.00807751361508446!GO:0006534;cysteine metabolic process;0.00821163185691829!GO:0030139;endocytic vesicle;0.0082511287631593!GO:0030036;actin cytoskeleton organization and biogenesis;0.00836511968042109!GO:0044275;cellular carbohydrate catabolic process;0.00858327527605878!GO:0046474;glycerophospholipid biosynthetic process;0.00864365920536389!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.00905983806446751!GO:0002449;lymphocyte mediated immunity;0.00919198236851424!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00923271513599256!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00923271513599256!GO:0019216;regulation of lipid metabolic process;0.00933141384273621!GO:0006022;aminoglycan metabolic process;0.00957605678501213!GO:0006839;mitochondrial transport;0.00961583257618965!GO:0000049;tRNA binding;0.00964060096709616!GO:0045786;negative regulation of progression through cell cycle;0.00968755087866215!GO:0006402;mRNA catabolic process;0.00990269247970945!GO:0031072;heat shock protein binding;0.00991432755254814!GO:0051346;negative regulation of hydrolase activity;0.0101983158670941!GO:0008430;selenium binding;0.0104683526135227!GO:0016421;CoA carboxylase activity;0.0104925662290456!GO:0046146;tetrahydrobiopterin metabolic process;0.01076196611472!GO:0006595;polyamine metabolic process;0.0112604615440096!GO:0005765;lysosomal membrane;0.011408877256704!GO:0007033;vacuole organization and biogenesis;0.0115556650349576!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.011619574161969!GO:0045047;protein targeting to ER;0.011619574161969!GO:0046467;membrane lipid biosynthetic process;0.011619574161969!GO:0051087;chaperone binding;0.0116817019325925!GO:0008186;RNA-dependent ATPase activity;0.0118278381415299!GO:0000050;urea cycle;0.0118354339633576!GO:0043603;amide metabolic process;0.0118354339633576!GO:0019627;urea metabolic process;0.0118354339633576!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0118938202899342!GO:0008312;7S RNA binding;0.0119733400352426!GO:0005624;membrane fraction;0.0119849353094942!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0123180992182794!GO:0031647;regulation of protein stability;0.0123681708585754!GO:0006572;tyrosine catabolic process;0.0124421921552237!GO:0006954;inflammatory response;0.0125156827239741!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0125402547144383!GO:0043488;regulation of mRNA stability;0.0125402547144383!GO:0043487;regulation of RNA stability;0.0125402547144383!GO:0030433;ER-associated protein catabolic process;0.0128725190521877!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0128725190521877!GO:0051101;regulation of DNA binding;0.0130899881661166!GO:0030663;COPI coated vesicle membrane;0.0130899881661166!GO:0030126;COPI vesicle coat;0.0130899881661166!GO:0016811;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;0.0132230642488399!GO:0016481;negative regulation of transcription;0.0132657031944943!GO:0006007;glucose catabolic process;0.013512979051514!GO:0016877;ligase activity, forming carbon-sulfur bonds;0.0135211100688485!GO:0045045;secretory pathway;0.0137519256446866!GO:0030880;RNA polymerase complex;0.0140822498964144!GO:0040008;regulation of growth;0.014108416639658!GO:0006643;membrane lipid metabolic process;0.0141474609606497!GO:0003756;protein disulfide isomerase activity;0.0146022115739559!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0146022115739559!GO:0030658;transport vesicle membrane;0.0146764825683174!GO:0009725;response to hormone stimulus;0.0146827334751125!GO:0015886;heme transport;0.0147258344602755!GO:0004364;glutathione transferase activity;0.0149046040947809!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0149739308845324!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0149786680124639!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0154827696704066!GO:0009067;aspartate family amino acid biosynthetic process;0.0155107076035336!GO:0006563;L-serine metabolic process;0.0156254789494456!GO:0009070;serine family amino acid biosynthetic process;0.0158362290000012!GO:0008168;methyltransferase activity;0.0159723836299346!GO:0050878;regulation of body fluid levels;0.0166674645214541!GO:0008139;nuclear localization sequence binding;0.016706129141373!GO:0065008;regulation of biological quality;0.016706129141373!GO:0030203;glycosaminoglycan metabolic process;0.0167198333063891!GO:0006658;phosphatidylserine metabolic process;0.0167913844154356!GO:0033344;cholesterol efflux;0.0170361316361884!GO:0002684;positive regulation of immune system process;0.0171178594900736!GO:0051716;cellular response to stimulus;0.0171216717160988!GO:0031902;late endosome membrane;0.0176328656657776!GO:0009374;biotin binding;0.0177062906613748!GO:0031406;carboxylic acid binding;0.0177306013655495!GO:0031326;regulation of cellular biosynthetic process;0.0177704163691023!GO:0005159;insulin-like growth factor receptor binding;0.0183968644160668!GO:0007006;mitochondrial membrane organization and biogenesis;0.018808027935873!GO:0048518;positive regulation of biological process;0.018808027935873!GO:0065009;regulation of a molecular function;0.018808027935873!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0189116195306642!GO:0018193;peptidyl-amino acid modification;0.0191600864954958!GO:0006081;aldehyde metabolic process;0.0193641718736005!GO:0051252;regulation of RNA metabolic process;0.0198691265132716!GO:0030027;lamellipodium;0.0202661021806402!GO:0016831;carboxy-lyase activity;0.0202948171384937!GO:0009225;nucleotide-sugar metabolic process;0.0202948171384937!GO:0044437;vacuolar part;0.0203304277614872!GO:0033673;negative regulation of kinase activity;0.0208816356013247!GO:0006469;negative regulation of protein kinase activity;0.0208816356013247!GO:0009605;response to external stimulus;0.0214505762084866!GO:0006974;response to DNA damage stimulus;0.0219007564447669!GO:0015924;mannosyl-oligosaccharide mannosidase activity;0.0219007564447669!GO:0002443;leukocyte mediated immunity;0.0219566695753365!GO:0030518;steroid hormone receptor signaling pathway;0.02206338847569!GO:0006892;post-Golgi vesicle-mediated transport;0.0222802960493883!GO:0050748;negative regulation of lipoprotein metabolic process;0.0225531008328886!GO:0006611;protein export from nucleus;0.0228283023289861!GO:0051591;response to cAMP;0.0232693105110825!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0233646240151274!GO:0050749;apolipoprotein E receptor binding;0.0236760040776741!GO:0006417;regulation of translation;0.0237524056268226!GO:0016878;acid-thiol ligase activity;0.0237813409551123!GO:0030212;hyaluronan metabolic process;0.0237813409551123!GO:0017166;vinculin binding;0.0239421653697048!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0247275631586219!GO:0006516;glycoprotein catabolic process;0.0247275631586219!GO:0009889;regulation of biosynthetic process;0.0251965581335911!GO:0016836;hydro-lyase activity;0.0263909645730024!GO:0035258;steroid hormone receptor binding;0.0264599776277621!GO:0030029;actin filament-based process;0.0267545467004562!GO:0006642;triacylglycerol mobilization;0.0269752523146188!GO:0050778;positive regulation of immune response;0.0269865263015196!GO:0004004;ATP-dependent RNA helicase activity;0.0272258936762291!GO:0006527;arginine catabolic process;0.0276207830852494!GO:0001726;ruffle;0.0276207830852494!GO:0002018;renin-angiotensin regulation of aldosterone production;0.0276207830852494!GO:0048143;astrocyte activation;0.0276207830852494!GO:0046622;positive regulation of organ growth;0.0276207830852494!GO:0031701;angiotensin receptor binding;0.0276207830852494!GO:0031703;type 2 angiotensin receptor binding;0.0276207830852494!GO:0045723;positive regulation of fatty acid biosynthetic process;0.0276207830852494!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.0276207830852494!GO:0042756;drinking behavior;0.0276207830852494!GO:0002019;angiotensin mediated regulation of renal output;0.0276207830852494!GO:0031702;type 1 angiotensin receptor binding;0.0276207830852494!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.0276207830852494!GO:0006733;oxidoreduction coenzyme metabolic process;0.0276696695932986!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0283922437779352!GO:0000428;DNA-directed RNA polymerase complex;0.0283922437779352!GO:0046904;calcium oxalate binding;0.0286252389791671!GO:0030568;plasmin inhibitor activity;0.0286252389791671!GO:0016407;acetyltransferase activity;0.0286770630007557!GO:0009086;methionine biosynthetic process;0.0286976675453623!GO:0042158;lipoprotein biosynthetic process;0.0291268426959187!GO:0050821;protein stabilization;0.0291268426959187!GO:0000062;acyl-CoA binding;0.0293677955802184!GO:0006826;iron ion transport;0.0295618255807895!GO:0016568;chromatin modification;0.02957194136326!GO:0042364;water-soluble vitamin biosynthetic process;0.0297615065533298!GO:0006779;porphyrin biosynthetic process;0.0297674072462944!GO:0033014;tetrapyrrole biosynthetic process;0.0297674072462944!GO:0016840;carbon-nitrogen lyase activity;0.0298058307434301!GO:0010038;response to metal ion;0.0299033789634285!GO:0015205;nucleobase transmembrane transporter activity;0.0310691433563439!GO:0032940;secretion by cell;0.0318156649422112!GO:0016563;transcription activator activity;0.0318156649422112!GO:0006693;prostaglandin metabolic process;0.0322356607856849!GO:0006692;prostanoid metabolic process;0.0322356607856849!GO:0046487;glyoxylate metabolic process;0.0326259487535015!GO:0004448;isocitrate dehydrogenase activity;0.0329558046615685!GO:0016791;phosphoric monoester hydrolase activity;0.0334325157949955!GO:0046489;phosphoinositide biosynthetic process;0.0338805095447091!GO:0055092;sterol homeostasis;0.0340585984421348!GO:0042632;cholesterol homeostasis;0.0340585984421348!GO:0000059;protein import into nucleus, docking;0.0344262179843781!GO:0002252;immune effector process;0.0344262179843781!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0347818901570131!GO:0007265;Ras protein signal transduction;0.0347902687253236!GO:0006891;intra-Golgi vesicle-mediated transport;0.0349751284162958!GO:0016712;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen;0.0352074786142713!GO:0048659;smooth muscle cell proliferation;0.0353707892885069!GO:0015682;ferric iron transport;0.0353891633030344!GO:0015091;ferric iron transmembrane transporter activity;0.0353891633030344!GO:0031643;positive regulation of myelination;0.0353891633030344!GO:0006026;aminoglycan catabolic process;0.0355988506745685!GO:0006027;glycosaminoglycan catabolic process;0.0355988506745685!GO:0006013;mannose metabolic process;0.0356583598889303!GO:0006729;tetrahydrobiopterin biosynthetic process;0.0359437085094788!GO:0045239;tricarboxylic acid cycle enzyme complex;0.036836528588412!GO:0043086;negative regulation of catalytic activity;0.0370885594625472!GO:0051348;negative regulation of transferase activity;0.0370885594625472!GO:0006354;RNA elongation;0.0371003505940537!GO:0006984;ER-nuclear signaling pathway;0.0372744757839375!GO:0006401;RNA catabolic process;0.0375710184838471!GO:0030660;Golgi-associated vesicle membrane;0.0379896282617552!GO:0046912;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;0.0382664153031033!GO:0016835;carbon-oxygen lyase activity;0.0385133719997404!GO:0006825;copper ion transport;0.0389611605975136!GO:0016671;oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;0.0391113977560577!GO:0043433;negative regulation of transcription factor activity;0.0391113977560577!GO:0008234;cysteine-type peptidase activity;0.0394681205699107!GO:0006633;fatty acid biosynthetic process;0.0395824195598175!GO:0008206;bile acid metabolic process;0.0399242336132659!GO:0030151;molybdenum ion binding;0.0404307474254835!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.041369962754262!GO:0006325;establishment and/or maintenance of chromatin architecture;0.041457653608367!GO:0002682;regulation of immune system process;0.0418236698129921!GO:0007030;Golgi organization and biogenesis;0.0419775713150215!GO:0035035;histone acetyltransferase binding;0.0420874843557102!GO:0003899;DNA-directed RNA polymerase activity;0.0422008409094481!GO:0004873;asialoglycoprotein receptor activity;0.0423120317125155!GO:0008112;nicotinamide N-methyltransferase activity;0.0426445347426638!GO:0005784;translocon complex;0.0426445347426638!GO:0043022;ribosome binding;0.0426445347426638!GO:0016052;carbohydrate catabolic process;0.042694769429607!GO:0048487;beta-tubulin binding;0.0431239601065639!GO:0033554;cellular response to stress;0.0432427162093965!GO:0001887;selenium metabolic process;0.0435140918170583!GO:0030137;COPI-coated vesicle;0.0446759310038667!GO:0008287;protein serine/threonine phosphatase complex;0.044854278672889!GO:0043094;metabolic compound salvage;0.0451765268566819!GO:0006818;hydrogen transport;0.045571977132042!GO:0008172;S-methyltransferase activity;0.0456945884016269!GO:0006096;glycolysis;0.0467554123219324!GO:0051235;maintenance of localization;0.0471625041908854!GO:0009116;nucleoside metabolic process;0.0474307375927109!GO:0006509;membrane protein ectodomain proteolysis;0.0476661079795326!GO:0033619;membrane protein proteolysis;0.0476661079795326!GO:0048662;negative regulation of smooth muscle cell proliferation;0.0492131726144367!GO:0031301;integral to organelle membrane;0.0492131726144367!GO:0003812;alternative-complement-pathway C3/C5 convertase activity;0.0499281079516591!GO:0004879;ligand-dependent nuclear receptor activity;0.0499281079516591 | |||
|sample_id=11684 | |sample_id=11684 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 105: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=HNF4A_NR2F1,2:6.97579996858;HNF1A:6.82376001728;FOXA2:5.49424867026;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.39418454623;BPTF:4.15886774687;STAT2,4,6:3.67804846462;FOX{F1,F2,J1}:3.55406534062;NR6A1:3.39281166518;AR:3.23430741007;NKX2-1,4:2.44697285399;CUX2:2.44386516351;FOXD3:2.30453697011;ADNP_IRX_SIX_ZHX:1.98305545074;EVI1:1.97136628576;POU6F1:1.88723689829;MTF1:1.70827961942;NFIL3:1.47057043203;FOX{D1,D2}:1.41974767218;EP300:1.38817008063;DBP:1.36916018282;TFCP2:1.21545333472;TBP:1.1161665906;TAL1_TCF{3,4,12}:1.09183227619;ARID5B:1.06579400271;ALX4:1.06523397877;HOX{A4,D4}:1.06310937857;GATA6:1.05577278346;IKZF2:1.00250794344;PAX4:0.966898606384;MYOD1:0.929764798057;RBPJ:0.918790495765;FOXM1:0.899213263232;NFE2L1:0.889655465178;CEBPA,B_DDIT3:0.87900046393;ATF6:0.852386941342;FOXP1:0.813152487445;GATA4:0.787608147303;FOXQ1:0.783236480786;ALX1:0.777531534011;SP1:0.760517013627;FOXL1:0.752218935292;MYBL2:0.716424975927;FOX{I1,J2}:0.710683328314;CDX1,2,4:0.688464716333;TOPORS:0.683667289182;HLF:0.639996453694;TLX2:0.626087272055;SMAD1..7,9:0.603266500643;IRF7:0.578822407507;TLX1..3_NFIC{dimer}:0.57077832355;MAZ:0.564612615453;MYFfamily:0.552836577314;NR1H4:0.538035262291;MED-1{core}:0.516435684033;MTE{core}:0.510408299717;FOXP3:0.497811463883;PAX1,9:0.47219124161;MAFB:0.442000988998;bHLH_family:0.421681278613;GLI1..3:0.416849415308;NKX3-2:0.408961966612;RORA:0.393059563548;SNAI1..3:0.388225141686;RREB1:0.387053661846;PAX6:0.369357812785;CRX:0.35207297685;RXRA_VDR{dimer}:0.331774541845;HIC1:0.32186072947;SREBF1,2:0.313247300732;ZNF423:0.30219893652;ONECUT1,2:0.294930145845;RXR{A,B,G}:0.247786664546;ZEB1:0.237167463992;HAND1,2:0.185662895329;PAX2:0.180900925268;ZBTB16:0.137420292929;LMO2:0.135804533859;REST:0.111279730398;TGIF1:0.0959135163532;T:0.095375936759;IKZF1:0.0656952883419;IRF1,2:0.0568787022525;HIF1A:0.0262737766994;NFATC1..3:0.0170904845808;PRDM1:0.00682592853106;NHLH1,2:-0.00975376506091;FOXN1:-0.0111466759145;GFI1:-0.0182030297952;SOX5:-0.0240517350798;UFEwm:-0.0535497996482;NFY{A,B,C}:-0.0818739571494;PATZ1:-0.091780873665;SOX{8,9,10}:-0.106828540918;KLF4:-0.116204509956;NR5A1,2:-0.120871982245;PAX3,7:-0.125371541037;ZNF384:-0.129835118972;ATF2:-0.163583461121;ATF5_CREB3:-0.175797330571;GTF2I:-0.176287344936;SPIB:-0.177702349123;SPI1:-0.193896137709;HOXA9_MEIS1:-0.195699423944;NANOG:-0.216600638603;MEF2{A,B,C,D}:-0.243497138895;STAT1,3:-0.24448983731;NFIX:-0.24804334832;ETS1,2:-0.248824113051;ZFP161:-0.259317077017;BREu{core}:-0.265473001059;ELF1,2,4:-0.275128166228;PBX1:-0.275889745818;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292012080089;ATF4:-0.295378702313;EGR1..3:-0.305595764211;NFE2:-0.346650617692;CREB1:-0.372441585998;GCM1,2:-0.41665092696;AIRE:-0.429788629068;ZNF143:-0.444225839467;TFAP2{A,C}:-0.445621899496;TEAD1:-0.454127821562;TFAP2B:-0.461007943097;SRF:-0.487105904665;PPARG:-0.511031152756;HOX{A5,B5}:-0.535627972579;STAT5{A,B}:-0.551410529508;NFKB1_REL_RELA:-0.570167178892;PDX1:-0.584525377883;TEF:-0.601506211376;HOX{A6,A7,B6,B7}:-0.607808459732;XBP1:-0.611623188124;PAX5:-0.662654725714;GFI1B:-0.664508856861;RUNX1..3:-0.695705687339;XCPE1{core}:-0.696231217482;YY1:-0.725049198202;HMX1:-0.728587030536;SOX17:-0.735099129963;PITX1..3:-0.760098962906;FOXO1,3,4:-0.761273042869;GTF2A1,2:-0.76762075377;GZF1:-0.774212083929;ESR1:-0.822536903031;LEF1_TCF7_TCF7L1,2:-0.862071285821;HMGA1,2:-0.868734074066;NFE2L2:-0.879092585807;NR3C1:-0.882775931017;AHR_ARNT_ARNT2:-0.911128566556;LHX3,4:-0.919193062073;ZBTB6:-0.920521601541;MZF1:-0.924921056152;DMAP1_NCOR{1,2}_SMARC:-0.925081567445;NRF1:-0.929056479209;FOSL2:-0.938382928333;EN1,2:-0.94530991108;SPZ1:-0.973560312493;ZNF238:-0.984239105092;JUN:-0.991170648012;HSF1,2:-1.00246305406;POU2F1..3:-1.02114532339;TP53:-1.02767113638;TFAP4:-1.06981726143;FOS_FOS{B,L1}_JUN{B,D}:-1.0966025243;OCT4_SOX2{dimer}:-1.10476214599;ZIC1..3:-1.10561539541;ZNF148:-1.12917702196;BACH2:-1.17060336076;TFDP1:-1.1802020484;RFX2..5_RFXANK_RFXAP:-1.20172905034;POU1F1:-1.20480554934;ELK1,4_GABP{A,B1}:-1.23440954681;RFX1:-1.23460801546;EBF1:-1.23663866105;ESRRA:-1.24017601252;E2F1..5:-1.25505896692;VSX1,2:-1.26665496626;HES1:-1.2689458053;PRRX1,2:-1.29370110828;TBX4,5:-1.31274214034;HBP1_HMGB_SSRP1_UBTF:-1.3465344684;NKX2-3_NKX2-5:-1.39432678078;NKX3-1:-1.46611967935;MYB:-1.52987969329;NKX6-1,2:-1.57636907708;SOX2:-1.60703098382;CDC5L:-1.63496388586;NANOG{mouse}:-1.65733194671;NKX2-2,8:-1.77467906937;POU3F1..4:-1.79121336108;POU5F1:-2.01019028191;PAX8:-2.20017930743 | |top_motifs=HNF4A_NR2F1,2:6.97579996858;HNF1A:6.82376001728;FOXA2:5.49424867026;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.39418454623;BPTF:4.15886774687;STAT2,4,6:3.67804846462;FOX{F1,F2,J1}:3.55406534062;NR6A1:3.39281166518;AR:3.23430741007;NKX2-1,4:2.44697285399;CUX2:2.44386516351;FOXD3:2.30453697011;ADNP_IRX_SIX_ZHX:1.98305545074;EVI1:1.97136628576;POU6F1:1.88723689829;MTF1:1.70827961942;NFIL3:1.47057043203;FOX{D1,D2}:1.41974767218;EP300:1.38817008063;DBP:1.36916018282;TFCP2:1.21545333472;TBP:1.1161665906;TAL1_TCF{3,4,12}:1.09183227619;ARID5B:1.06579400271;ALX4:1.06523397877;HOX{A4,D4}:1.06310937857;GATA6:1.05577278346;IKZF2:1.00250794344;PAX4:0.966898606384;MYOD1:0.929764798057;RBPJ:0.918790495765;FOXM1:0.899213263232;NFE2L1:0.889655465178;CEBPA,B_DDIT3:0.87900046393;ATF6:0.852386941342;FOXP1:0.813152487445;GATA4:0.787608147303;FOXQ1:0.783236480786;ALX1:0.777531534011;SP1:0.760517013627;FOXL1:0.752218935292;MYBL2:0.716424975927;FOX{I1,J2}:0.710683328314;CDX1,2,4:0.688464716333;TOPORS:0.683667289182;HLF:0.639996453694;TLX2:0.626087272055;SMAD1..7,9:0.603266500643;IRF7:0.578822407507;TLX1..3_NFIC{dimer}:0.57077832355;MAZ:0.564612615453;MYFfamily:0.552836577314;NR1H4:0.538035262291;MED-1{core}:0.516435684033;MTE{core}:0.510408299717;FOXP3:0.497811463883;PAX1,9:0.47219124161;MAFB:0.442000988998;bHLH_family:0.421681278613;GLI1..3:0.416849415308;NKX3-2:0.408961966612;RORA:0.393059563548;SNAI1..3:0.388225141686;RREB1:0.387053661846;PAX6:0.369357812785;CRX:0.35207297685;RXRA_VDR{dimer}:0.331774541845;HIC1:0.32186072947;SREBF1,2:0.313247300732;ZNF423:0.30219893652;ONECUT1,2:0.294930145845;RXR{A,B,G}:0.247786664546;ZEB1:0.237167463992;HAND1,2:0.185662895329;PAX2:0.180900925268;ZBTB16:0.137420292929;LMO2:0.135804533859;REST:0.111279730398;TGIF1:0.0959135163532;T:0.095375936759;IKZF1:0.0656952883419;IRF1,2:0.0568787022525;HIF1A:0.0262737766994;NFATC1..3:0.0170904845808;PRDM1:0.00682592853106;NHLH1,2:-0.00975376506091;FOXN1:-0.0111466759145;GFI1:-0.0182030297952;SOX5:-0.0240517350798;UFEwm:-0.0535497996482;NFY{A,B,C}:-0.0818739571494;PATZ1:-0.091780873665;SOX{8,9,10}:-0.106828540918;KLF4:-0.116204509956;NR5A1,2:-0.120871982245;PAX3,7:-0.125371541037;ZNF384:-0.129835118972;ATF2:-0.163583461121;ATF5_CREB3:-0.175797330571;GTF2I:-0.176287344936;SPIB:-0.177702349123;SPI1:-0.193896137709;HOXA9_MEIS1:-0.195699423944;NANOG:-0.216600638603;MEF2{A,B,C,D}:-0.243497138895;STAT1,3:-0.24448983731;NFIX:-0.24804334832;ETS1,2:-0.248824113051;ZFP161:-0.259317077017;BREu{core}:-0.265473001059;ELF1,2,4:-0.275128166228;PBX1:-0.275889745818;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292012080089;ATF4:-0.295378702313;EGR1..3:-0.305595764211;NFE2:-0.346650617692;CREB1:-0.372441585998;GCM1,2:-0.41665092696;AIRE:-0.429788629068;ZNF143:-0.444225839467;TFAP2{A,C}:-0.445621899496;TEAD1:-0.454127821562;TFAP2B:-0.461007943097;SRF:-0.487105904665;PPARG:-0.511031152756;HOX{A5,B5}:-0.535627972579;STAT5{A,B}:-0.551410529508;NFKB1_REL_RELA:-0.570167178892;PDX1:-0.584525377883;TEF:-0.601506211376;HOX{A6,A7,B6,B7}:-0.607808459732;XBP1:-0.611623188124;PAX5:-0.662654725714;GFI1B:-0.664508856861;RUNX1..3:-0.695705687339;XCPE1{core}:-0.696231217482;YY1:-0.725049198202;HMX1:-0.728587030536;SOX17:-0.735099129963;PITX1..3:-0.760098962906;FOXO1,3,4:-0.761273042869;GTF2A1,2:-0.76762075377;GZF1:-0.774212083929;ESR1:-0.822536903031;LEF1_TCF7_TCF7L1,2:-0.862071285821;HMGA1,2:-0.868734074066;NFE2L2:-0.879092585807;NR3C1:-0.882775931017;AHR_ARNT_ARNT2:-0.911128566556;LHX3,4:-0.919193062073;ZBTB6:-0.920521601541;MZF1:-0.924921056152;DMAP1_NCOR{1,2}_SMARC:-0.925081567445;NRF1:-0.929056479209;FOSL2:-0.938382928333;EN1,2:-0.94530991108;SPZ1:-0.973560312493;ZNF238:-0.984239105092;JUN:-0.991170648012;HSF1,2:-1.00246305406;POU2F1..3:-1.02114532339;TP53:-1.02767113638;TFAP4:-1.06981726143;FOS_FOS{B,L1}_JUN{B,D}:-1.0966025243;OCT4_SOX2{dimer}:-1.10476214599;ZIC1..3:-1.10561539541;ZNF148:-1.12917702196;BACH2:-1.17060336076;TFDP1:-1.1802020484;RFX2..5_RFXANK_RFXAP:-1.20172905034;POU1F1:-1.20480554934;ELK1,4_GABP{A,B1}:-1.23440954681;RFX1:-1.23460801546;EBF1:-1.23663866105;ESRRA:-1.24017601252;E2F1..5:-1.25505896692;VSX1,2:-1.26665496626;HES1:-1.2689458053;PRRX1,2:-1.29370110828;TBX4,5:-1.31274214034;HBP1_HMGB_SSRP1_UBTF:-1.3465344684;NKX2-3_NKX2-5:-1.39432678078;NKX3-1:-1.46611967935;MYB:-1.52987969329;NKX6-1,2:-1.57636907708;SOX2:-1.60703098382;CDC5L:-1.63496388586;NANOG{mouse}:-1.65733194671;NKX2-2,8:-1.77467906937;POU3F1..4:-1.79121336108;POU5F1:-2.01019028191;PAX8:-2.20017930743 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11684-122I1;search_select_hide=table117:FF:11684-122I1 | |||
}} | }} | ||
Latest revision as of 18:14, 4 June 2020
| Name: | Hepatocyte, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12626 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12626
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12626
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.171 |
| 10 | 10 | 0.82 |
| 100 | 100 | 0.246 |
| 101 | 101 | 0.905 |
| 102 | 102 | 0.0634 |
| 103 | 103 | 0.319 |
| 104 | 104 | 0.505 |
| 105 | 105 | 0.43 |
| 106 | 106 | 0.00392 |
| 107 | 107 | 0.00587 |
| 108 | 108 | 0.251 |
| 109 | 109 | 0.902 |
| 11 | 11 | 0.403 |
| 110 | 110 | 0.577 |
| 111 | 111 | 0.307 |
| 112 | 112 | 0.0129 |
| 113 | 113 | 2.31647e-4 |
| 114 | 114 | 0.15 |
| 115 | 115 | 0.854 |
| 116 | 116 | 0.35 |
| 117 | 117 | 0.275 |
| 118 | 118 | 0.314 |
| 119 | 119 | 0.0079 |
| 12 | 12 | 0.57 |
| 120 | 120 | 0.688 |
| 121 | 121 | 0.903 |
| 122 | 122 | 0.221 |
| 123 | 123 | 0.796 |
| 124 | 124 | 0.0803 |
| 125 | 125 | 0.118 |
| 126 | 126 | 0.553 |
| 127 | 127 | 0.0896 |
| 128 | 128 | 0.16 |
| 129 | 129 | 0.727 |
| 13 | 13 | 0.0898 |
| 130 | 130 | 0.0127 |
| 131 | 131 | 0.981 |
| 132 | 132 | 0.0556 |
| 133 | 133 | 0.319 |
| 134 | 134 | 0.775 |
| 135 | 135 | 0.525 |
| 136 | 136 | 0.0894 |
| 137 | 137 | 0.299 |
| 138 | 138 | 0.29 |
| 139 | 139 | 0.962 |
| 14 | 14 | 0.631 |
| 140 | 140 | 0.537 |
| 141 | 141 | 0.136 |
| 142 | 142 | 0.273 |
| 143 | 143 | 0.00249 |
| 144 | 144 | 0.445 |
| 145 | 145 | 0.265 |
| 146 | 146 | 0.47 |
| 147 | 147 | 0.948 |
| 148 | 148 | 0.175 |
| 149 | 149 | 0.146 |
| 15 | 15 | 1 |
| 150 | 150 | 0.891 |
| 151 | 151 | 0.451 |
| 152 | 152 | 0.949 |
| 153 | 153 | 0.816 |
| 154 | 154 | 0.406 |
| 155 | 155 | 0.0485 |
| 156 | 156 | 0.708 |
| 157 | 157 | 0.469 |
| 158 | 158 | 0.311 |
| 159 | 159 | 0.0708 |
| 16 | 16 | 0.603 |
| 160 | 160 | 0.503 |
| 161 | 161 | 0.973 |
| 162 | 162 | 0.589 |
| 163 | 163 | 0.598 |
| 164 | 164 | 0.378 |
| 165 | 165 | 0.00189 |
| 166 | 166 | 0.283 |
| 167 | 167 | 0.492 |
| 168 | 168 | 0.63 |
| 169 | 169 | 0.001 |
| 17 | 17 | 0.447 |
| 18 | 18 | 0.639 |
| 19 | 19 | 0.00157 |
| 2 | 2 | 0.185 |
| 20 | 20 | 0.98 |
| 21 | 21 | 0.12 |
| 22 | 22 | 0.0783 |
| 23 | 23 | 0.0518 |
| 24 | 24 | 0.76 |
| 25 | 25 | 0.802 |
| 26 | 26 | 0.251 |
| 27 | 27 | 0.514 |
| 28 | 28 | 0.946 |
| 29 | 29 | 0.94 |
| 3 | 3 | 0.528 |
| 30 | 30 | 0.646 |
| 31 | 31 | 0.22 |
| 32 | 32 | 0.406 |
| 33 | 33 | 0.995 |
| 34 | 34 | 0.254 |
| 35 | 35 | 0.299 |
| 36 | 36 | 0.391 |
| 37 | 37 | 0.982 |
| 38 | 38 | 0.227 |
| 39 | 39 | 0.238 |
| 4 | 4 | 0.156 |
| 40 | 40 | 0.258 |
| 41 | 41 | 0.0829 |
| 42 | 42 | 0.977 |
| 43 | 43 | 0.253 |
| 44 | 44 | 0.00459 |
| 45 | 45 | 0.332 |
| 46 | 46 | 0.254 |
| 47 | 47 | 0.818 |
| 48 | 48 | 0.488 |
| 49 | 49 | 0.151 |
| 5 | 5 | 0.285 |
| 50 | 50 | 0.399 |
| 51 | 51 | 0.937 |
| 52 | 52 | 0.0419 |
| 53 | 53 | 0.846 |
| 54 | 54 | 0.509 |
| 55 | 55 | 0.829 |
| 56 | 56 | 0.891 |
| 57 | 57 | 0.968 |
| 58 | 58 | 0.253 |
| 59 | 59 | 0.215 |
| 6 | 6 | 0.619 |
| 60 | 60 | 0.0222 |
| 61 | 61 | 0.662 |
| 62 | 62 | 0.211 |
| 63 | 63 | 0.15 |
| 64 | 64 | 0.659 |
| 65 | 65 | 0.0753 |
| 66 | 66 | 0.0539 |
| 67 | 67 | 0.0742 |
| 68 | 68 | 0.936 |
| 69 | 69 | 0.99 |
| 7 | 7 | 0.101 |
| 70 | 70 | 0.98 |
| 71 | 71 | 0.265 |
| 72 | 72 | 0.662 |
| 73 | 73 | 0.962 |
| 74 | 74 | 0.888 |
| 75 | 75 | 0.565 |
| 76 | 76 | 0.329 |
| 77 | 77 | 0.0271 |
| 78 | 78 | 0.175 |
| 79 | 79 | 0.829 |
| 8 | 8 | 0.137 |
| 80 | 80 | 0.984 |
| 81 | 81 | 0.721 |
| 82 | 82 | 0.307 |
| 83 | 83 | 0.972 |
| 84 | 84 | 0.45 |
| 85 | 85 | 0.00756 |
| 86 | 86 | 0.763 |
| 87 | 87 | 0.0394 |
| 88 | 88 | 0.318 |
| 89 | 89 | 0.278 |
| 9 | 9 | 0.842 |
| 90 | 90 | 0.511 |
| 91 | 91 | 0.175 |
| 92 | 92 | 0.344 |
| 93 | 93 | 0.586 |
| 94 | 94 | 0.194 |
| 95 | 95 | 0.14 |
| 96 | 96 | 0.0451 |
| 97 | 97 | 0.92 |
| 98 | 98 | 0.957 |
| 99 | 99 | 0.0694 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12626
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000078 human hepatocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000078 (human hepatocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
