FF:12181-129A3: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	Whole blood (ribopure), donor090309, donation3
Species:	Human (Homo sapiens)
Library ID:	CNhs11948,RDhi10002
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013674

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11948		CAGE		DRX008531		DRR009403
RDhi10002		RNA-Seq		DRX012355		DRR013803

Accession ID Hg19

Library id		BAM		CTSS
CNhs11948		DRZ000828		DRZ002213
RDhi10002		DRZ003004

Accession ID Hg38

Library id		BAM		CTSS
CNhs11948		DRZ012178		DRZ013563
RDhi10002

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.158
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.33
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.338
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.267
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	1.183
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.33
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.167
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.497
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.356
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.516
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.105
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.33
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.196
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.196
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.437
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.474
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.641
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.33
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.183
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.161
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.196
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.549
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.182
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.555
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.196
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.626
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.196
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.698
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.766
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.196
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.196
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.196
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.931
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.196
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.433
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11948

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.38341e-9
MA0003.1	MA0003.1	0.0755
MA0004.1	MA0004.1	0.44
MA0006.1	MA0006.1	0.455
MA0007.1	MA0007.1	0.778
MA0009.1	MA0009.1	0.0472
MA0014.1	MA0014.1	0.723
MA0017.1	MA0017.1	0.0875
MA0018.2	MA0018.2	0.00646
MA0019.1	MA0019.1	0.304
MA0024.1	MA0024.1	0.00738
MA0025.1	MA0025.1	0.393
MA0027.1	MA0027.1	0.724
MA0028.1	MA0028.1	0.757
MA0029.1	MA0029.1	0.662
MA0030.1	MA0030.1	0.108
MA0031.1	MA0031.1	2.48723e-4
MA0035.2	MA0035.2	8.82658e-5
MA0038.1	MA0038.1	0.00299
MA0039.2	MA0039.2	0.404
MA0040.1	MA0040.1	0.542
MA0041.1	MA0041.1	0.767
MA0042.1	MA0042.1	0.732
MA0043.1	MA0043.1	0.444
MA0046.1	MA0046.1	0.282
MA0047.2	MA0047.2	0.343
MA0048.1	MA0048.1	0.222
MA0050.1	MA0050.1	3.93205e-6
MA0051.1	MA0051.1	0.0613
MA0052.1	MA0052.1	0.00905
MA0055.1	MA0055.1	0.0286
MA0057.1	MA0057.1	0.907
MA0058.1	MA0058.1	0.436
MA0059.1	MA0059.1	0.458
MA0060.1	MA0060.1	4.05596e-6
MA0061.1	MA0061.1	0.0999
MA0062.2	MA0062.2	0.0127
MA0065.2	MA0065.2	0.141
MA0066.1	MA0066.1	0.279
MA0067.1	MA0067.1	0.521
MA0068.1	MA0068.1	0.966
MA0069.1	MA0069.1	0.551
MA0070.1	MA0070.1	0.0135
MA0071.1	MA0071.1	0.564
MA0072.1	MA0072.1	0.53
MA0073.1	MA0073.1	0.436
MA0074.1	MA0074.1	0.804
MA0076.1	MA0076.1	0.833
MA0077.1	MA0077.1	0.286
MA0078.1	MA0078.1	0.908
MA0079.2	MA0079.2	0.813
MA0080.2	MA0080.2	9.59064e-18
MA0081.1	MA0081.1	0.00515
MA0083.1	MA0083.1	0.638
MA0084.1	MA0084.1	0.868
MA0087.1	MA0087.1	0.748
MA0088.1	MA0088.1	0.416
MA0090.1	MA0090.1	0.011
MA0091.1	MA0091.1	0.168
MA0092.1	MA0092.1	0.846
MA0093.1	MA0093.1	0.335
MA0099.2	MA0099.2	0.107
MA0100.1	MA0100.1	0.681
MA0101.1	MA0101.1	0.987
MA0102.2	MA0102.2	0.00468
MA0103.1	MA0103.1	0.12
MA0104.2	MA0104.2	0.276
MA0105.1	MA0105.1	6.45333e-4
MA0106.1	MA0106.1	0.484
MA0107.1	MA0107.1	0.832
MA0108.2	MA0108.2	1.02326e-6
MA0111.1	MA0111.1	0.201
MA0112.2	MA0112.2	0.00126
MA0113.1	MA0113.1	0.487
MA0114.1	MA0114.1	0.412
MA0115.1	MA0115.1	0.774
MA0116.1	MA0116.1	2.75115e-5
MA0117.1	MA0117.1	0.675
MA0119.1	MA0119.1	0.423
MA0122.1	MA0122.1	0.953
MA0124.1	MA0124.1	0.768
MA0125.1	MA0125.1	0.0823
MA0131.1	MA0131.1	0.538
MA0135.1	MA0135.1	0.516
MA0136.1	MA0136.1	1.40736e-20
MA0137.2	MA0137.2	0.655
MA0138.2	MA0138.2	0.352
MA0139.1	MA0139.1	0.297
MA0140.1	MA0140.1	1.83249e-12
MA0141.1	MA0141.1	0.467
MA0142.1	MA0142.1	0.898
MA0143.1	MA0143.1	0.823
MA0144.1	MA0144.1	0.256
MA0145.1	MA0145.1	0.111
MA0146.1	MA0146.1	0.00311
MA0147.1	MA0147.1	0.264
MA0148.1	MA0148.1	0.638
MA0149.1	MA0149.1	0.419
MA0150.1	MA0150.1	0.0683
MA0152.1	MA0152.1	0.0282
MA0153.1	MA0153.1	0.0331
MA0154.1	MA0154.1	0.00629
MA0155.1	MA0155.1	0.705
MA0156.1	MA0156.1	1.97586e-12
MA0157.1	MA0157.1	0.00331
MA0159.1	MA0159.1	0.189
MA0160.1	MA0160.1	0.653
MA0162.1	MA0162.1	0.469
MA0163.1	MA0163.1	1.70963e-5
MA0164.1	MA0164.1	0.653
MA0258.1	MA0258.1	0.0102
MA0259.1	MA0259.1	0.198

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11948

Novel motif	Logo	P-value
1	1	0.134
10	10	0.0499
100	100	0.643
101	101	0.181
102	102	0.504
103	103	0.339
104	104	0.717
105	105	0.349
106	106	0.0131
107	107	0.429
108	108	0.993
109	109	0.133
11	11	0.0808
110	110	0.347
111	111	0.255
112	112	0.0919
113	113	0.169
114	114	0.0444
115	115	0.634
116	116	0.604
117	117	0.0323
118	118	0.269
119	119	0.33
12	12	0.361
120	120	0.415
121	121	0.953
122	122	0.577
123	123	0.00978
124	124	0.267
125	125	0.203
126	126	0.547
127	127	0.276
128	128	0.0155
129	129	0.614
13	13	0.95
130	130	0.426
131	131	0.974
132	132	0.655
133	133	0.859
134	134	0.911
135	135	0.415
136	136	0.98
137	137	0.0112
138	138	0.048
139	139	0.00933
14	14	0.161
140	140	0.211
141	141	0.43
142	142	0.742
143	143	0.00313
144	144	0.614
145	145	0.166
146	146	0.968
147	147	0.131
148	148	0.0927
149	149	0.472
15	15	0.0776
150	150	0.747
151	151	0.195
152	152	0.194
153	153	0.515
154	154	0.74
155	155	0.253
156	156	0.756
157	157	0.268
158	158	0.471
159	159	0.187
16	16	0.363
160	160	0.453
161	161	0.226
162	162	0.861
163	163	0.472
164	164	0.183
165	165	0.109
166	166	0.86
167	167	0.846
168	168	0.237
169	169	0.0136
17	17	0.375
18	18	0.558
19	19	0.226
2	2	0.207
20	20	0.663
21	21	0.187
22	22	0.217
23	23	0.107
24	24	0.049
25	25	0.32
26	26	0.141
27	27	0.102
28	28	0.536
29	29	0.507
3	3	0.0644
30	30	0.863
31	31	0.545
32	32	0.966
33	33	0.75
34	34	0.247
35	35	0.2
36	36	0.51
37	37	0.153
38	38	0.362
39	39	0.943
4	4	0.79
40	40	0.471
41	41	0.257
42	42	0.247
43	43	0.146
44	44	0.207
45	45	0.523
46	46	0.0785
47	47	0.154
48	48	0.263
49	49	0.105
5	5	0.339
50	50	0.88
51	51	0.389
52	52	0.454
53	53	0.098
54	54	0.265
55	55	0.0867
56	56	0.301
57	57	0.628
58	58	0.0845
59	59	0.0533
6	6	0.751
60	60	0.0635
61	61	0.275
62	62	0.0213
63	63	0.527
64	64	0.313
65	65	0.184
66	66	0.347
67	67	0.179
68	68	0.552
69	69	0.178
7	7	0.284
70	70	0.063
71	71	0.114
72	72	0.248
73	73	0.231
74	74	0.986
75	75	0.0904
76	76	0.433
77	77	0.495
78	78	0.328
79	79	0.567
8	8	0.294
80	80	0.121
81	81	0.224
82	82	0.0152
83	83	0.481
84	84	0.195
85	85	0.165
86	86	0.127
87	87	0.556
88	88	0.712
89	89	0.546
9	9	0.282
90	90	0.0174
91	91	0.32
92	92	0.0559
93	93	0.478
94	94	0.201
95	95	0.322
96	96	0.068
97	97	0.671
98	98	0.0297
99	99	0.661

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11948

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008423!RNA-Seq@DRS012102
+|DRA_sample_Accession=RNA-Seq@SAMD00013674
-|accession_numbers=CAGE;DRX008531;DRR009403;DRZ000828;DRZ002213!RNA-Seq;DRX012355;DRR013803;DRZ003004;NA
+|accession_numbers=CAGE;DRX008531;DRR009403;DRZ000828;DRZ002213;DRZ012178;DRZ013563!RNA-Seq;DRX012355;DRR013803;DRZ003004;
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:131623044..131623089,-!p1@MBNL3!3.00!3955.63!MBNL3;;chr11:47400078..47400106,-!p1@SPI1!2.71!508.69!SPI1;;chrX:131623026..131623039,-!p5@MBNL3!2.58!382.80!MBNL3;;chr12:54694653..54694672,-!p2@NFE2!2.56!358.88!NFE2;;chr12:54694758..54694805,-!p1@NFE2!2.46!340.65!NFE2;;chrX:70315688..70315709,+!p1@FOXO4!2.39!553.13!FOXO4;;chr7:28220506..28220552,-!p3@JAZF1!2.38!236.40!JAZF1;;chr2:68592406..68592424,+!p1@PLEK!2.32!207.92!PLEK;;chrX:131622958..131622978,-!p3@MBNL3!2.31!254.06!MBNL3;;chr10:51585449..51585487,+!p6@NCOA4!2.29!192.54!NCOA4;;chrX:131622988..131623006,-!p8@MBNL3!2.27!184.57!MBNL3;;chr7:28220354..28220441,-!p1@JAZF1!2.26!2600.44!JAZF1;;chr12:54694807..54694832,-!p3@NFE2!2.23!169.19!NFE2;;chr19:13213511..13213545,-!p2@LYL1!2.13!146.40!LYL1;;chr10:51572339..51572376,+!p4@NCOA4!2.09!264.32!NCOA4;;chr11:47400062..47400077,-!p2@SPI1!2.02!103.11!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.98!508.13!MXD1;;chr19:12998003..12998021,-!p1@KLF1!1.94!86.02!KLF1;;chr3:128212033..128212051,-!p1@GATA2!1.94!85.45!GATA2;;chr10:51572408..51572454,+!p3@NCOA4!1.93!469.39!NCOA4;;chr10:51585430..51585448,+!p7@NCOA4!1.81!63.80!NCOA4;;chr7:50344289..50344323,+!p1@IKZF1!1.80!62.66!IKZF1;;chr10:111985713..111985774,+!p2@MXI1!1.78!529.77!MXI1;;chr16:85932760..85932775,+!p1@IRF8!1.75!55.26!IRF8;;chr1:47697965..47697991,-!p7@TAL1!1.74!53.55!TAL1;;chr21:34442439..34442455,+!p1@OLIG1!1.73!52.98!OLIG1;;chr9:117150254..117150271,-!p1@AKNA!1.69!128.17!AKNA;;chr7:50343634..50343717,+!p2@IKZF1!1.67!46.14!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!1.67!45.57!SPI1;;chr19:13213555..13213568,-!p5@LYL1!1.67!45.57!LYL1;;chr12:54778471..54778528,-!p1@ZNF385A!1.65!43.86!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.65!43.29!SPI1;;chr2:148778973..148779035,+!p3@MBD5!1.63!105.38!MBD5;;chr1:23857325..23857416,-!p2@E2F2!1.62!47.28!E2F2;;chr11:47400032..47400043,-!p5@SPI1!1.61!39.31!SPI1;;chr7:28725715..28725727,+!p3@CREB5!1.60!45.57!CREB5;;chr1:43148855..43148908,+!p4@YBX1!1.57!56.40!YBX1;;chr19:13213662..13213686,-!p1@LYL1!1.57!52.41!LYL1;;chr17:79881433..79881452,-!p6@MAFG!1.57!35.89!MAFG;;chr1:25256756..25256774,-!p1@RUNX3!1.56!65.51!RUNX3;;chr5:133451294..133451310,+!p2@TCF7!1.56!35.32!TCF7;;chr17:45810594..45810608,+!p1@TBX21!1.56!35.32!TBX21;;chrX:48644984..48645005,+!p1@GATA1!1.55!34.75!GATA1;;chr3:141748010..141748030,-!p8@TFDP2!1.54!33.61!TFDP2;;chr4:109087445..109087463,-!p1@LEF1!1.53!33.04!LEF1;;chr2:68592394..68592405,+!p2@PLEK!1.52!32.47!PLEK;;chr3:27763807..27763822,-!p1@EOMES!1.52!31.90!EOMES;;chr10:111967345..111967422,+!p1@MXI1!1.50!479.64!MXI1;;chr20:50159198..50159299,-!p1@NFATC2!1.50!44.43!NFATC2;;chr11:47400045..47400060,-!p6@SPI1!1.50!30.76!SPI1;;chr19:16435625..16435682,+!p1@KLF2!1.49!908.02!KLF2;;chr12:10875831..10876025,-!p1@CSDA!1.48!2285.42!CSDA;;chr3:187463179..187463201,-!p2@BCL6!1.48!115.64!BCL6;;chr20:56195474..56195506,-!p1@ZBP1!1.48!29.05!ZBP1;;chr5:176735063..176735088,-!p2@MXD3!1.48!29.05!MXD3;;chr9:135854091..135854159,+!p1@GFI1B!1.47!28.48!GFI1B;;chr6:108881012..108881034,+!p3@FOXO3!1.46!96.27!FOXO3;;chr19:50922187..50922204,+!p1@SPIB!1.46!27.91!SPIB;;chr2:231090433..231090469,+!p1@SP140!1.43!26.20!SP140;;chr19:13213634..13213645,-!p8@LYL1!1.43!25.63!LYL1;;chr2:70167296..70167306,+!p3@MXD1!1.42!38.74!MXD1;;chr6:144385698..144385742,-!p2@PLAGL1!1.42!30.76!PLAGL1;;chr5:133450365..133450444,+!p1@TCF7!1.41!110.51!TCF7;;chr12:54689532..54689551,-!p4@NFE2!1.41!24.49!NFE2;;chr3:63953435..63953499,+!p1@ATXN7!1.41!24.49!ATXN7;;chr7:28725740..28725778,+!p1@CREB5!1.39!202.79!CREB5;;chr6:391743..391759,+!p1@IRF4!1.39!23.36!IRF4;;chr12:54689552..54689574,-!p6@NFE2!1.39!23.36!NFE2;;chr2:28618532..28618610,+!p4@FOSL2!1.38!39.31!FOSL2;;chrX:106960285..106960299,-!p1@TSC22D3!1.33!530.91!TSC22D3;;chrX:106960180..106960197,-!p2@TSC22D3!1.33!76.33!TSC22D3;;chr2:208031943..208031978,-!p5@KLF7!1.33!27.34!KLF7;;chr11:128563948..128564003,+!p1@FLI1!1.32!231.85!FLI1;;chr1:23857698..23857733,-!p1@E2F2!1.32!35.89!E2F2;;chr1:23857128..23857141,-!p6@E2F2!1.32!19.94!E2F2;;chr7:149470641..149470694,-!p1@ZNF467!1.31!86.02!ZNF467;;chr2:192015701..192015743,-!p1@STAT4!1.31!26.77!STAT4;;chr2:100759010..100759035,-!p1@AFF3!1.31!19.37!AFF3;;chr1:47697881..47697910,-!p4@TAL1!1.31!19.37!TAL1;;chr7:50344251..50344288,+!p3@IKZF1!1.27!17.66!IKZF1;;chr2:70142189..70142223,+!p2@MXD1!1.26!120.77!MXD1;;chr20:56195525..56195556,-!p2@ZBP1!1.26!17.09!ZBP1;;chr16:3313791..3313834,+!p2@ZNF263!1.25!36.46!ZNF263;;chr10:8096631..8096660,+!p1@GATA3!1.25!20.51!GATA3;;chr4:185395633..185395651,-!p2@IRF2!1.24!26.20!IRF2;;chr1:43148792..43148849,+!p2@YBX1!1.23!59.81!YBX1;;chrX:107018836..107018862,-!p8@TSC22D3!1.23!15.95!TSC22D3;;chr11:111249993..111250006,-!p1@POU2AF1!1.21!15.38!POU2AF1;;chr6:91006518..91006570,-!p1@BACH2!1.20!33.61!BACH2;;chr1:8484007..8484061,-!p13@RERE!1.20!18.80!RERE;;chr10:111985777..111985788,+!p4@MXI1!1.20!14.81!MXI1;;chr5:131826457..131826514,-!p1@IRF1!1.19!554.27!IRF1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.19!23.93!PCBP2;;chr3:71355163..71355209,-!p5@FOXP1!1.19!19.94!FOXP1;;chr14:75988771..75988826,+!p1@BATF!1.18!18.80!BATF;;chr12:10854595..10854628,-!p7@CSDA!1.17!19.37!CSDA;;chr17:37934365..37934387,-!p2@IKZF3!1.17!13.67!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.17!13.67!SP140;;chr17:38498402..38498445,+!p3@RARA!1.16!48.42!RARA;;chr17:38498594..38498661,+!p2@RARA!1.16!44.43!RARA;;chr3:71632840..71632857,-!p10@FOXP1!1.16!26.77!FOXP1;;chrX:107019163..107019179,-!p7@TSC22D3!1.16!15.38!TSC22D3;;chr19:42636586..42636607,-!p1@POU2F2!1.15!35.89!POU2F2;;chr16:88752889..88752921,-!p1@SNAI3!1.15!15.38!SNAI3;;chr17:38497662..38497713,+!p4@RARA!1.15!15.38!RARA;;chr12:54694738..54694749,-!p5@NFE2!1.15!13.10!NFE2;;chr3:18486354..18486377,-!p2@SATB1!1.14!15.95!SATB1;;chr10:51565239..51565263,+!p2@NCOA4!1.13!286.53!NCOA4;;chr21:36421535..36421610,-!p2@RUNX1!1.13!44.43!RUNX1;;chr2:113057415..113057477,+!p3@ZC3H6!1.12!15.95!ZC3H6;;chr7:149470540..149470596,-!p2@ZNF467!1.12!15.95!ZNF467;;chr7:115670804..115670825,-!p1@TFEC!1.11!11.96!TFEC;;chr7:149470297..149470337,-!p3@ZNF467!1.11!11.96!ZNF467;;chr21:34442540..34442560,+!p2@OLIG1!1.11!11.96!OLIG1;;chrX:107018969..107019024,-!p6@TSC22D3!1.10!15.95!TSC22D3;;chr13:41593425..41593480,-!p1@ELF1!1.09!71.78!ELF1;;chr4:185395191..185395226,-!p4@IRF2!1.09!15.95!IRF2;;chrX:131574281..131574293,-!p18@MBNL3!1.09!11.39!MBNL3;;chr7:50343895..50343936,+!p5@IKZF1!1.09!11.39!IKZF1;;chr1:47695003..47695042,-!p2@TAL1!1.09!11.39!TAL1;;chr10:31288398..31288455,-!p2@ZNF438!1.07!12.53!ZNF438;;chr12:54691711..54691725,-!p7@NFE2!1.07!10.82!NFE2;;chr12:54694686..54694697,-!p8@NFE2!1.07!10.82!NFE2;;chr4:109090075..109090095,-!p2@LEF1!1.07!10.82!LEF1;;chr7:128577972..128578047,+!p1@IRF5!1.06!16.52!IRF5;;chr4:106068026..106068084,+!p1@TET2!1.05!93.42!TET2;;chr6:106546808..106546833,+!p3@PRDM1!1.05!13.10!PRDM1;;chrX:131540376..131540407,-!p14@MBNL3!1.05!10.25!MBNL3;;chr2:100759037..100759058,-!p2@AFF3!1.05!10.25!AFF3;;chr9:137217986..137218049,+!p3@RXRA!1.04!29.05!RXRA;;chr1:221052776..221052799,+!p1@HLX!1.04!18.23!HLX;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!1.03!64.37!ZNF580;;chr19:19779619..19779670,+!p1@ZNF101!1.02!27.34!ZNF101;;chr9:32550965..32551031,-!p4@TOPORS!1.02!14.81!TOPORS;;chr12:10865870..10865888,-!p6@CSDA!1.02!13.10!CSDA;;chr2:231084659..231084721,-!p1@SP110!1.01!218.74!SP110;;chr2:208031542..208031595,-!p2@KLF7!1.01!67.22!KLF7;;chr6:108880956..108881011,+!p1@FOXO3!1.00!60.95!FOXO3;;chr6:108882109..108882173,+!p2@FOXO3!1.00!50.13!FOXO3;;chr10:94449703..94449718,+!p1@HHEX!1.00!35.32!HHEX;;chr1:47691303..47691319,-!p5@TAL1!1.00!9.11!TAL1;;chr2:192015750..192015793,-!p2@STAT4!0.99!11.96!STAT4;;chr4:185395590..185395627,-!p3@IRF2!0.99!10.82!IRF2;;chr11:128392273..128392308,-!p2@ETS1!0.98!37.60!ETS1;;chr17:38020392..38020477,-!p1@IKZF3!0.98!8.54!IKZF3;;chr17:38020557..38020572,-!p4@IKZF3!0.98!8.54!IKZF3;;chr19:10416315..10416333,-!p1@ZGLP1!0.98!8.54!ZGLP1;;chr19:13213954..13214021,-!p4@LYL1!0.98!8.54!LYL1;;chr11:130184753..130184824,-!p1@ZBTB44!0.97!117.92!ZBTB44;;chr2:208394817..208394834,+!p3@CREB1!0.97!34.75!CREB1;;chr2:60780607..60780624,-!p2@BCL11A!0.97!26.20!BCL11A;;chr4:140098339..140098392,-!p1@ELF2!0.96!68.93!ELF2;;chr10:8096772..8096787,+!p2@GATA3!0.96!9.68!GATA3;;chr10:94449675..94449694,+!p2@HHEX!0.95!21.65!HHEX;;chr11:16403910..16403933,-!p12@SOX6!0.95!7.98!SOX6;;chr8:71316021..71316068,-!p1@NCOA2!0.94!74.62!NCOA2;;chr5:172483347..172483407,+!p1@C5orf41!0.93!59.24!CREBRF;;chr9:117160738..117160782,-!p2@AKNA!0.93!32.47!AKNA;;chr12:57919293..57919311,+!p3@MBD6!0.93!21.08!MBD6;;chr19:56879534..56879615,+!p3@ZNF542!0.93!11.96!ZNF542;;chr2:145277640..145277771,-!p1@ZEB2!0.92!103.11!ZEB2;;chr16:29817231..29817290,+!p10@MAZ!0.92!22.22!MAZ;;chr1:25256439..25256476,-!p3@RUNX3!0.92!7.41!RUNX3;;chr12:10854646..10854658,-!p24@CSDA!0.92!7.41!CSDA;;chr12:54691726..54691738,-!p9@NFE2!0.92!7.41!NFE2;;chr1:156470515..156470542,-!p2@MEF2D!0.91!38.74!MEF2D;;chr8:123793959..123793977,+!p4@ZHX2!0.91!14.24!ZHX2;;chr6:15245677..15245723,+!p6@JARID2!0.91!10.82!JARID2;;chr9:117150303..117150312,-!p3@AKNA!0.91!9.11!AKNA;;chr4:38665769..38665801,+!p2@KLF3!0.90!66.08!KLF3;;chr19:33793430..33793447,-!p1@CEBPA!0.90!30.76!CEBPA;;chr3:71632864..71632885,-!p4@FOXP1!0.90!24.49!FOXP1;;chrX:106960221..106960236,-!p3@TSC22D3!0.90!19.94!TSC22D3;;chr12:10875658..10875708,-!p2@CSDA!0.90!16.52!CSDA;;chr1:156470494..156470505,-!p3@MEF2D!0.90!10.25!MEF2D;;chr9:88969339..88969422,-!p2@ZCCHC6!0.89!55.26!ZCCHC6;;chr5:88178983..88179012,-!p1@MEF2C!0.89!55.26!MEF2C;;chr7:137620650..137620677,-!p3@CREB3L2!0.89!6.84!CREB3L2;;chr17:79881409..79881423,-!p8@MAFG!0.89!6.84!MAFG;;chr2:113057501..113057529,+!p4@ZC3H6!0.89!6.84!ZC3H6;;chrX:48644976..48644983,+!p2@GATA1!0.89!6.84!GATA1;;chr9:37034186..37034216,-!p2@PAX5!0.89!6.84!PAX5;;chr17:40440481..40440550,+!p1@STAT5A!0.88!50.13!STAT5A;;chr16:1464688..1464728,-!p1@UNKL!0.88!47.85!UNKL;;chr15:60884706..60884743,-!p1@RORA!0.87!35.32!RORA;;chr4:106155658..106155662,+!p5@TET2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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:12181-129A3
 |is_a=EFO:0002091;;FF:0000002;;FF:0000281
 |is_obsolete=
 |library_id=CNhs11948!RDhi10002
-|library_ids=CNhs11948!RDhi10002
+|library_id_phase_based=2:CNhs11948
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12181
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12181
 |name=Whole blood (ribopure), donor090309, donation3
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11948,LSID836,release011,COMPLETED
-|profile_rnaseq=RDhi10002,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12181-129A3;search_select_hide=table117:FF:12181-129A3
 }}

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Latest revision as of 18:33, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0