FFCP PHASE1:Hg19::chr10:118898078..118898093,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11023 | |EntrezGene=11023 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12660 | |HGNC=12660 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SQQ9 | |UniProt=Q5SQQ9 | ||
|association_with_transcript=-266bp_to_ENST00000277905,ENST00000369206,NM_001112704,NM_199131,uc001ldb.1,uc009xyx.2_5end | |association_with_transcript=-266bp_to_ENST00000277905,ENST00000369206,NM_001112704,NM_199131,uc001ldb.1,uc009xyx.2_5end | ||
|cluster_id=chr10:118898078..118898093,- | |||
|coexpression_cluster_id=C90 | |||
|description=CAGE_peak_3_at_VAX1_5end | |description=CAGE_peak_3_at_VAX1_5end | ||
|id=chr10:118898078..118898093,- | |id=chr10:118898078..118898093,- | ||
|ontology_enrichment_celltype=CL:0002605!6.04e-12!3;CL:0000128!7.46e-09!7;CL:0000126!7.46e-09!7;CL:0000127!7.46e-09!7;CL:0002453!7.46e-09!7 | |ontology_enrichment_celltype=CL:0002605!6.04e-12!3;CL:0000128!7.46e-09!7;CL:0000126!7.46e-09!7;CL:0000127!7.46e-09!7;CL:0002453!7.46e-09!7 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.04e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.20e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.73e-29;1!UBERON:0003056;1.04e-10;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;2.55e-26;10!DOID:3095;2.09e-12;22!DOID:2994;2.09e-12;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.55e-26,10;DOID:3095,2.09e-12,22;DOID:2994,2.09e-12,22 | |||
|ontology_enrichment_uberon=UBERON:0001893!4.47e-44!34;UBERON:0002780!2.90e-43!41;UBERON:0001890!2.90e-43!41;UBERON:0006240!2.90e-43!41;UBERON:0001869!1.49e-42!32;UBERON:0003080!4.10e-42!42;UBERON:0002791!1.87e-41!33;UBERON:0001017!1.90e-36!82;UBERON:0002020!4.62e-36!34;UBERON:0003528!4.62e-36!34;UBERON:0000073!2.98e-35!94;UBERON:0001016!2.98e-35!94;UBERON:0005743!2.00e-34!86;UBERON:0000955!7.85e-33!69;UBERON:0006238!7.85e-33!69;UBERON:0001049!2.76e-32!57;UBERON:0005068!2.76e-32!57;UBERON:0006241!2.76e-32!57;UBERON:0007135!2.76e-32!57;UBERON:0002616!5.37e-31!59;UBERON:0003056!8.51e-30!61;UBERON:0002346!2.30e-28!90;UBERON:0000956!3.70e-27!25;UBERON:0000203!3.70e-27!25;UBERON:0000924!5.39e-24!173;UBERON:0006601!5.39e-24!173;UBERON:0003075!3.54e-23!86;UBERON:0007284!3.54e-23!86;UBERON:0004121!4.51e-20!169;UBERON:0002619!2.54e-19!22;UBERON:0000153!1.13e-18!129;UBERON:0007811!1.13e-18!129;UBERON:0000033!2.09e-18!123;UBERON:0001950!6.02e-18!20;UBERON:0007023!6.51e-16!115;UBERON:0000369!3.39e-15!4;UBERON:0002435!3.39e-15!4;UBERON:0000204!3.39e-15!4;UBERON:0010082!3.39e-15!4;UBERON:0009663!2.87e-13!7;UBERON:0005383!3.72e-12!3;UBERON:0005382!3.72e-12!3;UBERON:0002308!3.02e-10!9;UBERON:0002420!3.02e-10!9;UBERON:0000125!3.02e-10!9;UBERON:0007245!3.02e-10!9;UBERON:0010009!3.02e-10!9;UBERON:0010011!3.02e-10!9;UBERON:0000454!3.02e-10!9;UBERON:0000200!2.33e-09!6;UBERON:0000025!3.16e-09!194;UBERON:0003714!7.02e-09!2;UBERON:0005162!7.58e-09!2;UBERON:0000122!7.58e-09!2;UBERON:0001873!1.03e-08!2;UBERON:0010122!1.03e-08!2;UBERON:0002021!5.42e-07!5;UBERON:0004111!8.82e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;2.61e-64;4!UBERON:0000923;2.61e-64;4!UBERON:0010316;2.61e-64;4!UBERON:0005291;2.61e-64;4!UBERON:0002050;1.15e-51;5!UBERON:0005423;1.15e-51;5!UBERON:0000941;2.73e-29;1!UBERON:0001785;2.73e-29;1!UBERON:0002464;2.73e-29;1!UBERON:0004904;2.73e-29;1!UBERON:0001021;2.73e-29;1!UBERON:0003714;2.21e-15;2!UBERON:0005162;2.21e-15;2!UBERON:0000122;2.21e-15;2!UBERON:0000922;3.70e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.37e-29,1;UBERON:0001785,2.37e-29,1;UBERON:0002464,2.37e-29,1;UBERON:0004904,2.37e-29,1;UBERON:0001021,2.37e-29,1;UBERON:0003902,2.37e-29,1;UBERON:0005425,2.37e-29,1;UBERON:0003714,2.05e-15,2;UBERON:0005162,2.05e-15,2;UBERON:0000122,2.05e-15,2;UBERON:0002346,1.78e-08,86;UBERON:0001781,2.26e-08,4;UBERON:0004121,3.72e-08,171;UBERON:0000924,3.72e-08,171;UBERON:0006601,3.72e-08,171 | |||
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| ||
|short_description=p3@VAX1 | |short_description=p3@VAX1 | ||
}} | }} |
Latest revision as of 15:11, 16 September 2015
Short description: | p3@VAX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VAX1_5end |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | -266bp_to_ENST00000277905, ENST00000369206, NM_001112704, NM_199131, uc001ldb.1, uc009xyx.2_5end |
EntrezGene: | VAX1 |
HGNC: | 12660 |
UniProt: | Q5SQQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.20e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.37e-29 | 1 |
cranial nerve | 2.37e-29 | 1 |
nerve trunk | 2.37e-29 | 1 |
nerve connecting eye with brain | 2.37e-29 | 1 |
nerve | 2.37e-29 | 1 |
retinal neural layer | 2.37e-29 | 1 |
presumptive neural retina | 2.37e-29 | 1 |
neural tissue | 2.05e-15 | 2 |
multi cell component structure | 2.05e-15 | 2 |
neuron projection bundle | 2.05e-15 | 2 |
neurectoderm | 1.78e-08 | 86 |
layer of retina | 2.26e-08 | 4 |
ectoderm-derived structure | 3.72e-08 | 171 |
ectoderm | 3.72e-08 | 171 |
presumptive ectoderm | 3.72e-08 | 171 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.55e-26 | 10 |
germ cell and embryonal cancer | 2.09e-12 | 22 |
germ cell cancer | 2.09e-12 | 22 |