FFCP PHASE1:Hg19::chr10:71561630..71561641,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1305 | |EntrezGene=1305 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2190 | |HGNC=2190 | ||
|TSSclassifier=strong | |||
|UniProt=G5E987,E7ES56,E7ES55,E7ES51,E7ES50,E7ES49,E7ES47,E9PEG9,E7ES46,Q5TAT6,B9EGD2,E7EWL8 | |UniProt=G5E987,E7ES56,E7ES55,E7ES51,E7ES50,E7ES49,E7ES47,E9PEG9,E7ES46,Q5TAT6,B9EGD2,E7EWL8 | ||
|association_with_transcript=-2bp_to_ENST00000356340,ENST00000398964,ENST00000398966,ENST00000398968,ENST00000398969,ENST00000398971,ENST00000398972,ENST00000398973,ENST00000398974,NM_001130103,NM_080798,NM_080800,NM_080801,NM_080802,NM_080805,uc001jpr.1,uc001jps.1,uc001jpt.1, | |association_with_transcript=-2bp_to_ENST00000356340,ENST00000398964,ENST00000398966,ENST00000398968,ENST00000398969,ENST00000398971,ENST00000398972,ENST00000398973,ENST00000398974,NM_001130103,NM_080798,NM_080800,NM_080801,NM_080802,NM_080805,uc001jpr.1,uc001jps.1,uc001jpt.1,uc001jp | ||
|cluster_id=chr10:71561630..71561641,+ | |||
|coexpression_cluster_id=C3039 | |||
|description=CAGE_peak_3_at_COL13A1_5end | |description=CAGE_peak_3_at_COL13A1_5end | ||
|id=chr10:71561630..71561641,+ | |id=chr10:71561630..71561641,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.97e-15!180;CL:0000057!8.32e-11!75;CL:0000183!9.65e-10!59;CL:0000359!1.26e-09!32;CL:0000192!5.70e-09!42;CL:0000514!5.70e-09!42;CL:0000187!4.79e-08!54;CL:0000222!6.46e-08!119;CL:0000680!1.44e-07!57;CL:0000056!1.44e-07!57;CL:0000355!1.44e-07!57;CL:0002139!2.00e-07!24;CL:0000393!3.23e-07!60;CL:0000211!3.23e-07!60;CL:0000071!6.64e-07!18;CL:0002546!6.64e-07!18 | |ontology_enrichment_celltype=CL:0000055!3.97e-15!180;CL:0000057!8.32e-11!75;CL:0000183!9.65e-10!59;CL:0000359!1.26e-09!32;CL:0000192!5.70e-09!42;CL:0000514!5.70e-09!42;CL:0000187!4.79e-08!54;CL:0000222!6.46e-08!119;CL:0000680!1.44e-07!57;CL:0000056!1.44e-07!57;CL:0000355!1.44e-07!57;CL:0002139!2.00e-07!24;CL:0000393!3.23e-07!60;CL:0000211!3.23e-07!60;CL:0000071!6.64e-07!18;CL:0002546!6.64e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000097;2.06e-15;5!CL:0002603;7.88e-10;3!CL:0000359;6.63e-09;32!CL:0000163;2.24e-08;9!CL:0002575;1.09e-07;2!CL:1000413;1.10e-07;9!CL:0002544;1.47e-07;6!CL:0002549;1.72e-07;2!CL:0002539;3.06e-07;10!CL:0000071;7.39e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.51e-15,5;CL:0002028,1.51e-15,5;CL:0002603,1.17e-09,3;CL:0000359,7.47e-09,32;CL:0000163,1.90e-08,9;CL:1000413,8.32e-08,9;CL:0002544,1.03e-07,6;CL:0002575,1.14e-07,2;CL:0000222,1.51e-07,121;CL:0002549,1.60e-07,2;CL:0002539,2.23e-07,10;CL:0000115,2.93e-07,36;CL:0000192,3.45e-07,43;CL:0000514,3.45e-07,43;CL:0000071,5.39e-07,18;CL:0002546,5.39e-07,18;CL:0002367,9.44e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;6.79e-10;3!CL:0002546;7.39e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!5.42e-25!79;UBERON:0007798!5.42e-25!79;UBERON:0001009!4.74e-20!113;UBERON:0004535!7.95e-20!110;UBERON:0000055!2.71e-17!69;UBERON:0004872!4.63e-16!84;UBERON:0001981!6.80e-16!60;UBERON:0007500!6.80e-16!60;UBERON:0004537!6.80e-16!60;UBERON:0006965!6.80e-16!60;UBERON:0004573!2.98e-15!33;UBERON:0004571!2.98e-15!33;UBERON:0001637!5.95e-15!42;UBERON:0003509!5.95e-15!42;UBERON:0004572!5.95e-15!42;UBERON:0000477!4.01e-12!286;UBERON:0000947!3.16e-11!21;UBERON:0010191!3.16e-11!21;UBERON:0003914!6.06e-11!118;UBERON:0000119!8.99e-11!312;UBERON:0000483!1.05e-09!309;UBERON:0002200!1.61e-09!11;UBERON:0006876!1.61e-09!11;UBERON:0004111!2.49e-09!241;UBERON:0000468!3.40e-09!659;UBERON:0000490!8.44e-09!138;UBERON:0000025!3.39e-08!194;UBERON:0000467!1.41e-07!625;UBERON:0001134!1.58e-07!61;UBERON:0002036!1.58e-07!61;UBERON:0003082!1.58e-07!61;UBERON:0002385!1.72e-07!63;UBERON:0001015!1.72e-07!63;UBERON:0000383!1.72e-07!63;UBERON:0000480!1.79e-07!626;UBERON:0000914!5.22e-07!83;UBERON:0002329!5.22e-07!83;UBERON:0003077!5.22e-07!83;UBERON:0003059!5.22e-07!83;UBERON:0007282!5.22e-07!83;UBERON:0009618!5.22e-07!83;UBERON:0007285!5.22e-07!83;UBERON:0004290!5.41e-07!70;UBERON:0001986!6.64e-07!18;UBERON:0004638!6.64e-07!18;UBERON:0004852!6.64e-07!18;UBERON:0000487!6.82e-07!22;UBERON:0002037!7.91e-07!6;UBERON:0006215!7.91e-07!6;UBERON:0007100!9.00e-07!27 | |ontology_enrichment_uberon=UBERON:0002049!5.42e-25!79;UBERON:0007798!5.42e-25!79;UBERON:0001009!4.74e-20!113;UBERON:0004535!7.95e-20!110;UBERON:0000055!2.71e-17!69;UBERON:0004872!4.63e-16!84;UBERON:0001981!6.80e-16!60;UBERON:0007500!6.80e-16!60;UBERON:0004537!6.80e-16!60;UBERON:0006965!6.80e-16!60;UBERON:0004573!2.98e-15!33;UBERON:0004571!2.98e-15!33;UBERON:0001637!5.95e-15!42;UBERON:0003509!5.95e-15!42;UBERON:0004572!5.95e-15!42;UBERON:0000477!4.01e-12!286;UBERON:0000947!3.16e-11!21;UBERON:0010191!3.16e-11!21;UBERON:0003914!6.06e-11!118;UBERON:0000119!8.99e-11!312;UBERON:0000483!1.05e-09!309;UBERON:0002200!1.61e-09!11;UBERON:0006876!1.61e-09!11;UBERON:0004111!2.49e-09!241;UBERON:0000468!3.40e-09!659;UBERON:0000490!8.44e-09!138;UBERON:0000025!3.39e-08!194;UBERON:0000467!1.41e-07!625;UBERON:0001134!1.58e-07!61;UBERON:0002036!1.58e-07!61;UBERON:0003082!1.58e-07!61;UBERON:0002385!1.72e-07!63;UBERON:0001015!1.72e-07!63;UBERON:0000383!1.72e-07!63;UBERON:0000480!1.79e-07!626;UBERON:0000914!5.22e-07!83;UBERON:0002329!5.22e-07!83;UBERON:0003077!5.22e-07!83;UBERON:0003059!5.22e-07!83;UBERON:0007282!5.22e-07!83;UBERON:0009618!5.22e-07!83;UBERON:0007285!5.22e-07!83;UBERON:0004290!5.41e-07!70;UBERON:0001986!6.64e-07!18;UBERON:0004638!6.64e-07!18;UBERON:0004852!6.64e-07!18;UBERON:0000487!6.82e-07!22;UBERON:0002037!7.91e-07!6;UBERON:0006215!7.91e-07!6;UBERON:0007100!9.00e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;5.18e-18;6!UBERON:0000947;6.67e-17;21!UBERON:0010191;6.67e-17;21!UBERON:0004573;2.75e-14;33!UBERON:0004571;2.75e-14;33!UBERON:0001637;1.92e-13;42!UBERON:0003509;1.92e-13;42!UBERON:0004572;1.92e-13;42!UBERON:0002680;9.50e-12;9!UBERON:0001895;9.50e-12;9!UBERON:0005284;1.83e-10;5!UBERON:0006876;2.15e-09;11!UBERON:0007500;9.38e-09;56!UBERON:0001981;9.38e-09;56!UBERON:0004537;9.38e-09;56!UBERON:0004733;1.29e-08;12!UBERON:0002028;1.29e-08;12!UBERON:0004732;6.82e-08;13!UBERON:0003915;1.10e-07;9!UBERON:0004700;1.10e-07;9!UBERON:0001917;1.10e-07;9!UBERON:0005629;1.72e-07;2!UBERON:0005358;1.72e-07;2!UBERON:0001886;1.72e-07;2!UBERON:0004086;1.72e-07;2!UBERON:0005282;1.72e-07;2!UBERON:0005281;1.72e-07;2!UBERON:0002049;2.23e-07;75!UBERON:0007798;2.23e-07;75!UBERON:0004237;3.06e-07;10!UBERON:0004695;3.06e-07;10!UBERON:0002111;3.06e-07;10!UBERON:0004178;3.06e-07;10!UBERON:0000487;3.57e-07;22!UBERON:0004638;7.39e-07;18!UBERON:0001986;7.39e-07;18!UBERON:0004852;7.39e-07;18 | |||
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| ||
|short_description=p3@COL13A1 | |short_description=p3@COL13A1 | ||
}} | }} |
Latest revision as of 01:15, 19 September 2015
Short description: | p3@COL13A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL13A1_5end |
Coexpression cluster: | C3039_Pericytes_Smooth_alveolar_Fibroblast_fibrosarcoma_Lens_Meningeal |
Association with transcript: | -2bp_to_ENST00000356340, ENST00000398964, ENST00000398966, ENST00000398968, ENST00000398969, ENST00000398971, ENST00000398972, ENST00000398973, ENST00000398974, NM_001130103, NM_080798, NM_080800, NM_080801, NM_080802, NM_080805, uc001jpr.1, uc001jps.1, uc001jpt.1, uc001jp |
EntrezGene: | COL13A1 |
HGNC: | 2190 |
UniProt: | G5E987E7ES56E7ES55E7ES51E7ES50E7ES49E7ES47E9PEG9E7ES46Q5TAT6B9EGD2E7EWL8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.51e-15 | 5 |
basophil mast progenitor cell | 1.51e-15 | 5 |
astrocyte of the cerebellum | 1.17e-09 | 3 |
vascular associated smooth muscle cell | 7.47e-09 | 32 |
endocrine cell | 1.90e-08 | 9 |
endothelial cell of artery | 8.32e-08 | 9 |
aortic endothelial cell | 1.03e-07 | 6 |
central nervous system pericyte | 1.14e-07 | 2 |
mesodermal cell | 1.51e-07 | 121 |
fibroblast of choroid plexus | 1.60e-07 | 2 |
aortic smooth muscle cell | 2.23e-07 | 10 |
endothelial cell | 2.93e-07 | 36 |
smooth muscle cell | 3.45e-07 | 43 |
smooth muscle myoblast | 3.45e-07 | 43 |
blood vessel endothelial cell | 5.39e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.39e-07 | 18 |
trabecular meshwork cell | 9.44e-07 | 2 |