FFCP PHASE1:Hg19::chr15:77907723..77907735,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84894 | |EntrezGene=84894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21205 | |HGNC=21205 | ||
|TSSclassifier=strong | |||
|UniProt=Q96FE5 | |UniProt=Q96FE5 | ||
|association_with_transcript=59bp_to_AY324322_5end | |association_with_transcript=59bp_to_AY324322_5end | ||
|cluster_id=chr15:77907723..77907735,- | |||
|coexpression_cluster_id=C2350 | |||
|description=CAGE_peak_13_at_LINGO1_5end | |description=CAGE_peak_13_at_LINGO1_5end | ||
|id=chr15:77907723..77907735,- | |id=chr15:77907723..77907735,- | ||
|ontology_enrichment_celltype=CL:0002322!1.75e-11!5;CL:0000540!1.50e-08!6;CL:0000031!1.50e-08!6;CL:0000404!1.50e-08!6;CL:0000148!4.89e-07!10;CL:0000541!4.89e-07!10 | |ontology_enrichment_celltype=CL:0002322!1.75e-11!5;CL:0000540!1.50e-08!6;CL:0000031!1.50e-08!6;CL:0000404!1.50e-08!6;CL:0000148!4.89e-07!10;CL:0000541!4.89e-07!10 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!4.59e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:171;3.25e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.03e-08,10 | |||
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| ||
|short_description=p13@LINGO1 | |short_description=p13@LINGO1 | ||
}} | }} |
Latest revision as of 05:38, 19 September 2015
Short description: | p13@LINGO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_LINGO1_5end |
Coexpression cluster: | C2350_medial_brain_amygdala_hippocampus_neuroectodermal_occipital_small |
Association with transcript: | 59bp_to_AY324322_5end |
EntrezGene: | LINGO1 |
HGNC: | 21205 |
UniProt: | Q96FE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
temporal lobe | 6.62e-24 | 6 |
regional part of cerebral cortex | 1.00e-19 | 22 |
cerebral cortex | 1.81e-17 | 25 |
pallium | 1.81e-17 | 25 |
limbic system | 1.51e-15 | 5 |
neocortex | 4.30e-14 | 20 |
regional part of telencephalon | 8.55e-14 | 32 |
cerebral hemisphere | 8.55e-14 | 32 |
brain grey matter | 5.17e-13 | 34 |
gray matter | 5.17e-13 | 34 |
telencephalon | 5.17e-13 | 34 |
regional part of forebrain | 7.37e-11 | 41 |
forebrain | 7.37e-11 | 41 |
anterior neural tube | 7.37e-11 | 41 |
future forebrain | 7.37e-11 | 41 |
middle temporal gyrus | 1.43e-10 | 2 |
Ammon's horn | 1.72e-10 | 2 |
lobe parts of cerebral cortex | 1.72e-10 | 2 |
hippocampal formation | 1.72e-10 | 2 |
limbic lobe | 1.72e-10 | 2 |
amygdala | 2.07e-10 | 2 |
neurectoderm | 6.91e-10 | 86 |
brain | 3.55e-09 | 68 |
future brain | 3.55e-09 | 68 |
regional part of nervous system | 1.86e-08 | 53 |
regional part of brain | 1.86e-08 | 53 |
neural tube | 5.18e-08 | 56 |
neural rod | 5.18e-08 | 56 |
future spinal cord | 5.18e-08 | 56 |
neural keel | 5.18e-08 | 56 |
central nervous system | 1.05e-07 | 81 |
pre-chordal neural plate | 2.29e-07 | 61 |
duodenum | 2.79e-07 | 2 |
nervous system | 6.25e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.03e-08 | 10 |