FFCP PHASE1:Mm9::chr8:109555254..109555265,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=116733 | |EntrezGene=116733 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VEJ9 | |UniProt=Q8VEJ9 | ||
|association_with_transcript=28bp_to_NM_126165,uc009ngv.1_5end | |association_with_transcript=28bp_to_NM_126165,uc009ngv.1_5end | ||
|cluster_id=chr8:109555254..109555265,+ | |||
|description=CAGE_peak_2_at_Vps4a_5end | |description=CAGE_peak_2_at_Vps4a_5end | ||
|id=chr8:109555254..109555265,+ | |id=chr8:109555254..109555265,+ | ||
|ontology_enrichment_celltype=CL:0000540!2.72e-15!33;CL:0000047!2.72e-15!33;CL:0000031!2.72e-15!33;CL:0000404!2.72e-15!33;CL:0000117!2.57e-14!23;CL:0000337!2.57e-14!23;CL:0002319!5.35e-13!43;CL:0000393!1.58e-12!39;CL:0000211!1.58e-12!39;CL:0000221!3.23e-12!44;CL:0000133!3.23e-12!44;CL:0000055!1.70e-10!50 | |ontology_enrichment_celltype=CL:0000540!2.72e-15!33;CL:0000047!2.72e-15!33;CL:0000031!2.72e-15!33;CL:0000404!2.72e-15!33;CL:0000117!2.57e-14!23;CL:0000337!2.57e-14!23;CL:0002319!5.35e-13!43;CL:0000393!1.58e-12!39;CL:0000211!1.58e-12!39;CL:0000221!3.23e-12!44;CL:0000133!3.23e-12!44;CL:0000055!1.70e-10!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.33e-15,33;CL:0000047,1.33e-15,33;CL:0000031,1.33e-15,33;CL:0000404,1.33e-15,33;CL:0000117,1.32e-14,23;CL:0000337,1.32e-14,23;CL:0002319,6.89e-13,43;CL:0000393,8.40e-13,39;CL:0000211,8.40e-13,39;CL:0000221,4.73e-12,44;CL:0000133,4.73e-12,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.11e-24!73;UBERON:0005743!2.11e-24!73;UBERON:0000073!4.49e-24!75;UBERON:0001016!4.49e-24!75;UBERON:0002346!5.20e-20!71;UBERON:0003075!5.20e-20!71;UBERON:0007284!5.20e-20!71;UBERON:0004121!1.91e-19!102;UBERON:0000924!1.91e-19!102;UBERON:0006601!1.91e-19!102;UBERON:0001049!7.98e-19!52;UBERON:0005068!7.98e-19!52;UBERON:0006241!7.98e-19!52;UBERON:0007135!7.98e-19!52;UBERON:0000955!1.71e-17!50;UBERON:0006238!1.71e-17!50;UBERON:0002616!3.31e-17!49;UBERON:0002020!7.23e-17!34;UBERON:0000033!4.66e-16!63;UBERON:0003056!9.32e-16!49;UBERON:0003080!7.52e-15!40;UBERON:0002780!9.52e-15!39;UBERON:0001890!9.52e-15!39;UBERON:0006240!9.52e-15!39;UBERON:0000153!7.67e-14!94;UBERON:0007811!9.74e-14!86;UBERON:0002791!1.62e-13!29;UBERON:0003528!1.62e-13!29;UBERON:0001893!1.62e-13!29;UBERON:0000956!8.48e-09!21;UBERON:0001869!8.48e-09!21;UBERON:0000203!8.48e-09!21;UBERON:0002619!3.48e-07!17 | |ontology_enrichment_uberon=UBERON:0001017!2.11e-24!73;UBERON:0005743!2.11e-24!73;UBERON:0000073!4.49e-24!75;UBERON:0001016!4.49e-24!75;UBERON:0002346!5.20e-20!71;UBERON:0003075!5.20e-20!71;UBERON:0007284!5.20e-20!71;UBERON:0004121!1.91e-19!102;UBERON:0000924!1.91e-19!102;UBERON:0006601!1.91e-19!102;UBERON:0001049!7.98e-19!52;UBERON:0005068!7.98e-19!52;UBERON:0006241!7.98e-19!52;UBERON:0007135!7.98e-19!52;UBERON:0000955!1.71e-17!50;UBERON:0006238!1.71e-17!50;UBERON:0002616!3.31e-17!49;UBERON:0002020!7.23e-17!34;UBERON:0000033!4.66e-16!63;UBERON:0003056!9.32e-16!49;UBERON:0003080!7.52e-15!40;UBERON:0002780!9.52e-15!39;UBERON:0001890!9.52e-15!39;UBERON:0006240!9.52e-15!39;UBERON:0000153!7.67e-14!94;UBERON:0007811!9.74e-14!86;UBERON:0002791!1.62e-13!29;UBERON:0003528!1.62e-13!29;UBERON:0001893!1.62e-13!29;UBERON:0000956!8.48e-09!21;UBERON:0001869!8.48e-09!21;UBERON:0000203!8.48e-09!21;UBERON:0002619!3.48e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.68e-24,73;UBERON:0001016,3.58e-24,75;UBERON:0000073,7.93e-21,54;UBERON:0002346,1.05e-20,64;UBERON:0003075,1.05e-20,64;UBERON:0007284,1.05e-20,64;UBERON:0004121,1.56e-19,95;UBERON:0000924,1.56e-19,95;UBERON:0006601,1.56e-19,95;UBERON:0001049,5.11e-19,52;UBERON:0005068,5.11e-19,52;UBERON:0006241,5.11e-19,52;UBERON:0007135,5.11e-19,52;UBERON:0002020,3.27e-17,34;UBERON:0010314,5.45e-17,92;UBERON:0003056,4.46e-16,49;UBERON:0010371,7.67e-16,73;UBERON:0000955,8.40e-16,47;UBERON:0006238,8.40e-16,47;UBERON:0002616,1.63e-15,46;UBERON:0003080,3.77e-15,40;UBERON:0002780,4.80e-15,39;UBERON:0001890,4.80e-15,39;UBERON:0006240,4.80e-15,39;UBERON:0003528,8.72e-14,29;UBERON:0002791,8.72e-14,29;UBERON:0001893,8.72e-14,29;UBERON:0000956,5.82e-09,21;UBERON:0001869,5.82e-09,21;UBERON:0000203,5.82e-09,21;UBERON:0002619,2.60e-07,17 | |||
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| ||
|short_description=p2@Vps4a | |short_description=p2@Vps4a | ||
}} | }} |
Latest revision as of 08:58, 27 September 2015
Short description: | p2@Vps4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Vps4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 28bp_to_NM_126165, uc009ngv.1_5end |
EntrezGene: | Vps4a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.33e-15 | 33 |
neuronal stem cell | 1.33e-15 | 33 |
neuroblast | 1.33e-15 | 33 |
electrically signaling cell | 1.33e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.32e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.32e-14 | 23 |
neural cell | 6.89e-13 | 43 |
electrically responsive cell | 8.40e-13 | 39 |
electrically active cell | 8.40e-13 | 39 |
ectodermal cell | 4.73e-12 | 44 |
neurectodermal cell | 4.73e-12 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.68e-24 | 73 |
nervous system | 3.58e-24 | 75 |
regional part of nervous system | 7.93e-21 | 54 |
neurectoderm | 1.05e-20 | 64 |
neural plate | 1.05e-20 | 64 |
presumptive neural plate | 1.05e-20 | 64 |
ectoderm-derived structure | 1.56e-19 | 95 |
ectoderm | 1.56e-19 | 95 |
presumptive ectoderm | 1.56e-19 | 95 |
neural tube | 5.11e-19 | 52 |
neural rod | 5.11e-19 | 52 |
future spinal cord | 5.11e-19 | 52 |
neural keel | 5.11e-19 | 52 |
gray matter | 3.27e-17 | 34 |
structure with developmental contribution from neural crest | 5.45e-17 | 92 |
pre-chordal neural plate | 4.46e-16 | 49 |
ecto-epithelium | 7.67e-16 | 73 |
brain | 8.40e-16 | 47 |
future brain | 8.40e-16 | 47 |
regional part of brain | 1.63e-15 | 46 |
anterior neural tube | 3.77e-15 | 40 |
regional part of forebrain | 4.80e-15 | 39 |
forebrain | 4.80e-15 | 39 |
future forebrain | 4.80e-15 | 39 |
brain grey matter | 8.72e-14 | 29 |
regional part of telencephalon | 8.72e-14 | 29 |
telencephalon | 8.72e-14 | 29 |
cerebral cortex | 5.82e-09 | 21 |
cerebral hemisphere | 5.82e-09 | 21 |
pallium | 5.82e-09 | 21 |
regional part of cerebral cortex | 2.60e-07 | 17 |