FFCP PHASE1:Hg19::chr16:4401284..4401340,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51025 | |EntrezGene=51025 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29679 | |HGNC=29679 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002cwd.2_5end | |association_with_transcript=0bp_to_uc002cwd.2_5end | ||
|cluster_id=chr16:4401284..4401340,- | |||
|description=CAGE_peak_1_at_PAM16_5end | |description=CAGE_peak_1_at_PAM16_5end | ||
|id=chr16:4401284..4401340,- | |id=chr16:4401284..4401340,- | ||
|ontology_enrichment_celltype=CL:0000066!3.52e-17!254;CL:0002321!3.74e-16!248;CL:0000220!1.06e-15!246;CL:0000055!2.42e-11!180;CL:0000393!1.45e-09!60;CL:0000211!1.45e-09!60;CL:0000183!9.91e-09!59;CL:0000221!1.82e-08!71;CL:0000680!1.23e-07!57;CL:0000056!1.23e-07!57;CL:0000355!1.23e-07!57;CL:0000187!1.65e-07!54;CL:0000133!1.69e-07!59;CL:0000192!2.94e-07!42;CL:0000514!2.94e-07!42 | |ontology_enrichment_celltype=CL:0000066!3.52e-17!254;CL:0002321!3.74e-16!248;CL:0000220!1.06e-15!246;CL:0000055!2.42e-11!180;CL:0000393!1.45e-09!60;CL:0000211!1.45e-09!60;CL:0000183!9.91e-09!59;CL:0000221!1.82e-08!71;CL:0000680!1.23e-07!57;CL:0000056!1.23e-07!57;CL:0000355!1.23e-07!57;CL:0000187!1.65e-07!54;CL:0000133!1.69e-07!59;CL:0000192!2.94e-07!42;CL:0000514!2.94e-07!42 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.29e-17,253;CL:0002321,2.05e-16,250;CL:0000393,1.29e-09,61;CL:0000211,1.29e-09,61;CL:0000221,1.76e-08,72;CL:0000680,1.09e-07,58;CL:0000056,1.09e-07,58;CL:0000355,1.09e-07,58;CL:0000187,1.46e-07,55;CL:0000133,1.69e-07,59;CL:0000192,2.70e-07,43;CL:0000514,2.70e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.36e-15!239;DOID:162!7.12e-15!235;DOID:0050687!2.46e-14!143;DOID:305!2.60e-09!106;DOID:3095!8.98e-07!22;DOID:2994!8.98e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;9.43e-07;22!DOID:2994;9.43e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.36e-15,239;DOID:162,7.12e-15,235;DOID:0050687,2.46e-14,143;DOID:305,2.60e-09,106;DOID:3095,8.98e-07,22;DOID:2994,8.98e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0003104!6.33e-17!238;UBERON:0009142!6.33e-17!238;UBERON:0002100!1.18e-14!216;UBERON:0000481!1.91e-12!347;UBERON:0000475!5.32e-11!365;UBERON:0004290!1.54e-10!70;UBERON:0000486!7.20e-10!82;UBERON:0005256!3.04e-09!143;UBERON:0001134!8.40e-09!61;UBERON:0002036!8.40e-09!61;UBERON:0003082!8.40e-09!61;UBERON:0000119!1.49e-08!312;UBERON:0000483!1.63e-08!309;UBERON:0000914!1.81e-08!83;UBERON:0002329!1.81e-08!83;UBERON:0003077!1.81e-08!83;UBERON:0003059!1.81e-08!83;UBERON:0007282!1.81e-08!83;UBERON:0009618!1.81e-08!83;UBERON:0007285!1.81e-08!83;UBERON:0009569!3.49e-08!113;UBERON:0002385!5.17e-08!63;UBERON:0001015!5.17e-08!63;UBERON:0000383!5.17e-08!63;UBERON:0000464!5.45e-08!104;UBERON:0008947!8.30e-08!38;UBERON:0003258!8.30e-08!38;UBERON:0001048!9.75e-08!168;UBERON:0000915!3.96e-07!52;UBERON:0000072!5.90e-07!46;UBERON:0000466!6.28e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;1.28e-08;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,8.33e-17,199;UBERON:0007503,1.37e-12,78;UBERON:0003104,6.19e-12,160;UBERON:0009142,6.19e-12,160;UBERON:0002329,1.37e-10,71;UBERON:0003059,1.37e-10,71;UBERON:0007282,1.37e-10,71;UBERON:0004290,1.37e-10,71;UBERON:0009618,1.37e-10,71;UBERON:0003077,1.63e-10,72;UBERON:0007285,1.63e-10,72;UBERON:0007524,2.68e-10,73;UBERON:0000486,6.27e-10,83;UBERON:0005256,1.12e-09,122;UBERON:0001134,7.44e-09,62;UBERON:0002036,7.44e-09,62;UBERON:0003082,7.44e-09,62;UBERON:0009569,3.74e-08,112;UBERON:0002385,4.54e-08,64;UBERON:0001015,4.54e-08,64;UBERON:0000383,4.54e-08,64;UBERON:0000119,4.58e-08,309;UBERON:0000483,5.00e-08,306;UBERON:0008947,8.30e-08,38;UBERON:0003258,8.30e-08,38;UBERON:0005177,1.37e-07,101;UBERON:0000915,3.60e-07,52;UBERON:0000072,5.33e-07,47 | |||
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| ||
|short_description=p1@PAM16 | |short_description=p1@PAM16 | ||
}} | }} |
Latest revision as of 16:15, 16 September 2015
Short description: | p1@PAM16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAM16_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc002cwd.2_5end |
EntrezGene: | PAM16 |
HGNC: | 29679 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.29e-17 | 253 |
embryonic cell | 2.05e-16 | 250 |
electrically responsive cell | 1.29e-09 | 61 |
electrically active cell | 1.29e-09 | 61 |
ectodermal cell | 1.76e-08 | 72 |
muscle precursor cell | 1.09e-07 | 58 |
myoblast | 1.09e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.09e-07 | 58 |
muscle cell | 1.46e-07 | 55 |
neurectodermal cell | 1.69e-07 | 59 |
smooth muscle cell | 2.70e-07 | 43 |
smooth muscle myoblast | 2.70e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 8.33e-17 | 199 |
epithelial vesicle | 1.37e-12 | 78 |
mesenchyme | 6.19e-12 | 160 |
entire embryonic mesenchyme | 6.19e-12 | 160 |
somite | 1.37e-10 | 71 |
presomitic mesoderm | 1.37e-10 | 71 |
presumptive segmental plate | 1.37e-10 | 71 |
dermomyotome | 1.37e-10 | 71 |
trunk paraxial mesoderm | 1.37e-10 | 71 |
paraxial mesoderm | 1.63e-10 | 72 |
presumptive paraxial mesoderm | 1.63e-10 | 72 |
dense mesenchyme tissue | 2.68e-10 | 73 |
multilaminar epithelium | 6.27e-10 | 83 |
trunk mesenchyme | 1.12e-09 | 122 |
skeletal muscle tissue | 7.44e-09 | 62 |
striated muscle tissue | 7.44e-09 | 62 |
myotome | 7.44e-09 | 62 |
subdivision of trunk | 3.74e-08 | 112 |
muscle tissue | 4.54e-08 | 64 |
musculature | 4.54e-08 | 64 |
musculature of body | 4.54e-08 | 64 |
cell layer | 4.58e-08 | 309 |
epithelium | 5.00e-08 | 306 |
respiratory primordium | 8.30e-08 | 38 |
endoderm of foregut | 8.30e-08 | 38 |
trunk region element | 1.37e-07 | 101 |
thoracic segment of trunk | 3.60e-07 | 52 |
segment of respiratory tract | 5.33e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.36e-15 | 239 |
cancer | 7.12e-15 | 235 |
cell type cancer | 2.46e-14 | 143 |
carcinoma | 2.60e-09 | 106 |
germ cell and embryonal cancer | 8.98e-07 | 22 |
germ cell cancer | 8.98e-07 | 22 |