FFCP PHASE1:Hg19::chr17:7112233..7112262,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:7112233..7112262,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_at_chr17:7112233..7112262,- | |description=CAGE_peak_at_chr17:7112233..7112262,- | ||
|id=chr17:7112233..7112262,- | |id=chr17:7112233..7112262,- | ||
|ontology_enrichment_celltype=CL:0002322!3.38e-19!5;CL:0000147!2.10e-18!14;CL:0002586!8.08e-15!3;CL:0000325!2.09e-12!39;CL:0000149!2.37e-11!4;CL:0000148!6.75e-10!10;CL:0000541!6.75e-10!10;CL:0000075!1.58e-09!27;CL:0000710!1.75e-08!20 | |ontology_enrichment_celltype=CL:0002322!3.38e-19!5;CL:0000147!2.10e-18!14;CL:0002586!8.08e-15!3;CL:0000325!2.09e-12!39;CL:0000149!2.37e-11!4;CL:0000148!6.75e-10!10;CL:0000541!6.75e-10!10;CL:0000075!1.58e-09!27;CL:0000710!1.75e-08!20 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.97e-44;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.44e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.44e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0000966!6.54e-34!5;UBERON:0005388!6.54e-34!5;UBERON:0001802!6.54e-34!5;UBERON:0000970!3.72e-25!20;UBERON:0002104!6.24e-24!21;UBERON:0001905!9.70e-23!2;UBERON:0002757!9.70e-23!2;UBERON:0010134!9.70e-23!2;UBERON:0002784!9.70e-23!2;UBERON:0005408!9.70e-23!2;UBERON:0001899!9.70e-23!2;UBERON:0000020!8.43e-22!23;UBERON:0001032!7.21e-21!24;UBERON:0004456!7.21e-21!24;UBERON:0000019!1.64e-19!19;UBERON:0000047!1.64e-19!19;UBERON:0004088!1.64e-19!19;UBERON:0003072!1.64e-19!19;UBERON:0003071!1.64e-19!19;UBERON:0004128!1.64e-19!19;UBERON:0001456!1.27e-17!21;UBERON:0007625!2.19e-15!11;UBERON:0001781!8.08e-15!3;UBERON:0001782!8.08e-15!3;UBERON:0005424!8.08e-15!3;UBERON:0001894!2.90e-14!7;UBERON:0006222!2.90e-14!7;UBERON:0005085!1.15e-12!29;UBERON:0003056!1.33e-12!61;UBERON:0003296!7.37e-12!4;UBERON:0010133!7.37e-12!4;UBERON:0003075!1.00e-10!86;UBERON:0007284!1.00e-10!86;UBERON:0002346!3.42e-10!90;UBERON:0001444!1.72e-07!48;UBERON:0005743!9.35e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.04e-66;2!UBERON:0002757;1.04e-66;2!UBERON:0010134;1.04e-66;2!UBERON:0005408;1.04e-66;2!UBERON:0001899;1.04e-66;2!UBERON:0003296;5.06e-34;4!UBERON:0010133;5.06e-34;4!UBERON:0002784;5.06e-34;4!UBERON:0000966;4.63e-27;5!UBERON:0005388;4.63e-27;5!UBERON:0001802;4.63e-27;5!UBERON:0001894;5.89e-20;7!UBERON:0000970;1.50e-15;20!UBERON:0002104;7.53e-15;21!UBERON:0000020;1.25e-13;23!UBERON:0001032;4.28e-13;24!UBERON:0004456;4.28e-13;24!UBERON:0000019;6.82e-08;19!UBERON:0000047;6.82e-08;19!UBERON:0004088;6.82e-08;19!UBERON:0010230;6.82e-08;19!UBERON:0001456;3.14e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.04e-66,2;UBERON:0002757,1.04e-66,2;UBERON:0010134,1.04e-66,2;UBERON:0005408,1.04e-66,2;UBERON:0001899,1.04e-66,2;UBERON:0003296,5.06e-34,4;UBERON:0010133,5.06e-34,4;UBERON:0002784,5.06e-34,4;UBERON:0000966,9.46e-23,6;UBERON:0005388,9.46e-23,6;UBERON:0001802,9.46e-23,6;UBERON:0001894,5.89e-20,7;UBERON:0006222,5.89e-20,7;UBERON:0000970,7.53e-15,21;UBERON:0002104,7.53e-15,21;UBERON:0000020,4.28e-13,24;UBERON:0001032,4.28e-13,24;UBERON:0004456,4.28e-13,24;UBERON:0003056,4.43e-09,61;UBERON:0000019,1.52e-07,20;UBERON:0000047,1.52e-07,20;UBERON:0010312,1.52e-07,20;UBERON:0004088,1.52e-07,20;UBERON:0010230,1.52e-07,20;UBERON:0003072,1.52e-07,20;UBERON:0004128,1.52e-07,20;UBERON:0003071,1.52e-07,20;UBERON:0001456,6.09e-07,22;UBERON:0003075,6.64e-07,82;UBERON:0007284,6.64e-07,82 | |||
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|short_description=p@chr17:7112233..7112262,- | |short_description=p@chr17:7112233..7112262,- | ||
}} | }} |
Latest revision as of 20:37, 25 July 2015
Short description: | p@chr17:7112233..7112262, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:7112233..7112262, - |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.04e-66 | 2 |
regional part of epithalamus | 1.04e-66 | 2 |
secretory circumventricular organ | 1.04e-66 | 2 |
circumventricular organ | 1.04e-66 | 2 |
epithalamus | 1.04e-66 | 2 |
gland of diencephalon | 5.06e-34 | 4 |
neuroendocrine gland | 5.06e-34 | 4 |
regional part of diencephalon | 5.06e-34 | 4 |
retina | 9.46e-23 | 6 |
photoreceptor array | 9.46e-23 | 6 |
posterior segment of eyeball | 9.46e-23 | 6 |
diencephalon | 5.89e-20 | 7 |
future diencephalon | 5.89e-20 | 7 |
eye | 7.53e-15 | 21 |
visual system | 7.53e-15 | 21 |
sense organ | 4.28e-13 | 24 |
sensory system | 4.28e-13 | 24 |
entire sense organ system | 4.28e-13 | 24 |
pre-chordal neural plate | 4.43e-09 | 61 |
camera-type eye | 1.52e-07 | 20 |
simple eye | 1.52e-07 | 20 |
immature eye | 1.52e-07 | 20 |
ocular region | 1.52e-07 | 20 |
eyeball of camera-type eye | 1.52e-07 | 20 |
optic cup | 1.52e-07 | 20 |
optic vesicle | 1.52e-07 | 20 |
eye primordium | 1.52e-07 | 20 |
face | 6.09e-07 | 22 |
neural plate | 6.64e-07 | 82 |
presumptive neural plate | 6.64e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.44e-09 | 4 |