FFCP PHASE1:Hg19::chr19:12886327..12886387,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29911 | |EntrezGene=29911 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19885 | |HGNC=19885 | ||
|TSSclassifier=strong | |||
|UniProt=Q96ED9 | |UniProt=Q96ED9 | ||
|association_with_transcript=46bp_to_ENST00000264827,ENST00000397668,NM_001100176,NM_013312,uc002muy.2,uc002muz.2,uc002mva.2_5end | |association_with_transcript=46bp_to_ENST00000264827,ENST00000397668,NM_001100176,NM_013312,uc002muy.2,uc002muz.2,uc002mva.2_5end | ||
|cluster_id=chr19:12886327..12886387,- | |||
|description=CAGE_peak_1_at_HOOK2_5end | |description=CAGE_peak_1_at_HOOK2_5end | ||
|id=chr19:12886327..12886387,- | |id=chr19:12886327..12886387,- | ||
|ontology_enrichment_celltype=CL:0000066!1.57e-12!254;CL:0002076!6.20e-09!43;CL:0000223!8.04e-09!59 | |ontology_enrichment_celltype=CL:0000066!1.57e-12!254;CL:0002076!6.20e-09!43;CL:0000223!8.04e-09!59 | ||
|ontology_enrichment_celltype_v019=CL:0002076;5.49e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.26e-12,253;CL:0002076,5.12e-09,42;CL:0000223,5.35e-09,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.10e-13!106;DOID:0050687!6.84e-13!143;DOID:299!5.23e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;6.41e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.73e-13,106;DOID:0050687,1.32e-12,143;DOID:299,4.97e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.98e-13!169;UBERON:0000925!2.98e-13!169;UBERON:0006595!2.98e-13!169;UBERON:0000924!1.58e-11!173;UBERON:0006601!1.58e-11!173;UBERON:0004121!3.13e-11!169;UBERON:0000475!8.38e-11!365;UBERON:0000481!1.22e-10!347;UBERON:0001007!1.81e-10!155;UBERON:0001555!1.81e-10!155;UBERON:0007026!1.81e-10!155;UBERON:0007023!1.99e-10!115;UBERON:0000064!1.52e-09!219;UBERON:0000153!4.55e-09!129;UBERON:0007811!4.55e-09!129;UBERON:0004921!5.96e-09!129;UBERON:0004185!5.96e-09!129;UBERON:0000033!1.28e-08!123;UBERON:0000466!3.02e-08!126;UBERON:0000077!3.09e-08!130;UBERON:0005911!4.67e-08!82;UBERON:0005177!6.28e-08!107;UBERON:0000464!1.96e-07!104;UBERON:0001049!3.14e-07!57;UBERON:0005068!3.14e-07!57;UBERON:0006241!3.14e-07!57;UBERON:0007135!3.14e-07!57;UBERON:0001004!5.70e-07!72;UBERON:0000062!6.62e-07!511;UBERON:0002346!7.97e-07!90 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,1.57e-14,223;UBERON:0004119,9.04e-13,160;UBERON:0000925,9.04e-13,160;UBERON:0006595,9.04e-13,160;UBERON:0004121,1.47e-11,171;UBERON:0000924,1.47e-11,171;UBERON:0006601,1.47e-11,171;UBERON:0001007,2.04e-10,145;UBERON:0001555,2.04e-10,145;UBERON:0007026,2.04e-10,145;UBERON:0007023,3.81e-10,114;UBERON:0004921,4.79e-09,118;UBERON:0010371,7.14e-09,104;UBERON:0005911,4.06e-08,82;UBERON:0005177,8.36e-08,101;UBERON:0001049,4.92e-07,56;UBERON:0005068,4.92e-07,56;UBERON:0006241,4.92e-07,56;UBERON:0007135,4.92e-07,56;UBERON:0002346,5.34e-07,86;UBERON:0003075,9.44e-07,82;UBERON:0007284,9.44e-07,82 | |||
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| ||
|short_description=p1@HOOK2 | |short_description=p1@HOOK2 | ||
}} | }} |
Latest revision as of 20:29, 15 September 2015
Short description: | p1@HOOK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOOK2_5end |
Coexpression cluster: | NA |
Association with transcript: | 46bp_to_ENST00000264827, ENST00000397668, NM_001100176, NM_013312, uc002muy.2, uc002muz.2, uc002mva.2_5end |
EntrezGene: | HOOK2 |
HGNC: | 19885 |
UniProt: | Q96ED9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.26e-12 | 253 |
endo-epithelial cell | 5.12e-09 | 42 |
endodermal cell | 5.35e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 1.57e-14 | 223 |
endoderm-derived structure | 9.04e-13 | 160 |
endoderm | 9.04e-13 | 160 |
presumptive endoderm | 9.04e-13 | 160 |
ectoderm-derived structure | 1.47e-11 | 171 |
ectoderm | 1.47e-11 | 171 |
presumptive ectoderm | 1.47e-11 | 171 |
digestive system | 2.04e-10 | 145 |
digestive tract | 2.04e-10 | 145 |
primitive gut | 2.04e-10 | 145 |
adult organism | 3.81e-10 | 114 |
subdivision of digestive tract | 4.79e-09 | 118 |
ecto-epithelium | 7.14e-09 | 104 |
endo-epithelium | 4.06e-08 | 82 |
trunk region element | 8.36e-08 | 101 |
neural tube | 4.92e-07 | 56 |
neural rod | 4.92e-07 | 56 |
future spinal cord | 4.92e-07 | 56 |
neural keel | 4.92e-07 | 56 |
neurectoderm | 5.34e-07 | 86 |
neural plate | 9.44e-07 | 82 |
presumptive neural plate | 9.44e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.73e-13 | 106 |
cell type cancer | 1.32e-12 | 143 |
adenocarcinoma | 4.97e-08 | 25 |