FFCP PHASE1:Hg19::chr19:48828788..48828853,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2014 | |EntrezGene=2014 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3335 | |HGNC=3335 | ||
|TSSclassifier=strong | |||
|UniProt=P54852 | |UniProt=P54852 | ||
|association_with_transcript=159bp_to_ENST00000270221,NM_001425,uc002piv.2_5end | |association_with_transcript=159bp_to_ENST00000270221,NM_001425,uc002piv.2_5end | ||
|cluster_id=chr19:48828788..48828853,+ | |||
|coexpression_cluster_id=C3181 | |||
|description=CAGE_peak_1_at_EMP3_5end | |description=CAGE_peak_1_at_EMP3_5end | ||
|id=chr19:48828788..48828853,+ | |id=chr19:48828788..48828853,+ | ||
|ontology_enrichment_celltype=CL:0002371!7.44e-37!591;CL:0000055!1.47e-35!180;CL:0000144!3.78e-33!625;CL:0000048!8.69e-29!430;CL:0000723!2.23e-28!436;CL:0000034!2.93e-26!444;CL:0000003!5.03e-26!722;CL:0000183!2.85e-22!59;CL:0000548!1.73e-21!679;CL:0000004!1.73e-21!679;CL:0000255!1.73e-21!679;CL:0000012!2.83e-21!682;CL:0000680!3.90e-21!57;CL:0000056!3.90e-21!57;CL:0000355!3.90e-21!57;CL:0000187!4.12e-20!54;CL:0000192!1.92e-19!42;CL:0000514!1.92e-19!42;CL:0002320!1.43e-16!365;CL:0000057!1.93e-16!75;CL:0000359!2.14e-16!32;CL:0000393!5.39e-16!60;CL:0000211!5.39e-16!60;CL:0000134!2.15e-14!358;CL:0000219!6.78e-14!390;CL:0000222!1.19e-13!119;CL:0002620!3.05e-07!23 | |ontology_enrichment_celltype=CL:0002371!7.44e-37!591;CL:0000055!1.47e-35!180;CL:0000144!3.78e-33!625;CL:0000048!8.69e-29!430;CL:0000723!2.23e-28!436;CL:0000034!2.93e-26!444;CL:0000003!5.03e-26!722;CL:0000183!2.85e-22!59;CL:0000548!1.73e-21!679;CL:0000004!1.73e-21!679;CL:0000255!1.73e-21!679;CL:0000012!2.83e-21!682;CL:0000680!3.90e-21!57;CL:0000056!3.90e-21!57;CL:0000355!3.90e-21!57;CL:0000187!4.12e-20!54;CL:0000192!1.92e-19!42;CL:0000514!1.92e-19!42;CL:0002320!1.43e-16!365;CL:0000057!1.93e-16!75;CL:0000359!2.14e-16!32;CL:0000393!5.39e-16!60;CL:0000211!5.39e-16!60;CL:0000134!2.15e-14!358;CL:0000219!6.78e-14!390;CL:0000222!1.19e-13!119;CL:0002620!3.05e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.64e-15;32!CL:0000192;2.77e-14;43!CL:0000187;2.14e-11;55!CL:0000134;2.06e-09;55!CL:0000393;1.68e-08;61!CL:0000211;1.68e-08;61!CL:0000048;5.93e-08;58!CL:0000723;6.64e-08;61!CL:0000057;2.09e-07;73!CL:0002620;2.97e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,3.21e-29,427;CL:0000723,8.38e-29,433;CL:0000034,1.17e-26,441;CL:0000680,2.31e-21,58;CL:0000056,2.31e-21,58;CL:0000355,2.31e-21,58;CL:0000187,2.46e-20,55;CL:0000192,1.21e-19,43;CL:0000514,1.21e-19,43;CL:0002320,1.08e-16,361;CL:0000057,2.01e-16,76;CL:0000359,2.13e-16,32;CL:0000393,3.14e-16,61;CL:0000211,3.14e-16,61;CL:0000134,1.65e-14,354;CL:0000222,5.71e-14,121;CL:0000219,5.78e-14,386;CL:0002620,3.05e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;2.77e-14;43!CL:0000355;1.39e-11;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.17e-24!83;UBERON:0002329!1.17e-24!83;UBERON:0003077!1.17e-24!83;UBERON:0003059!1.17e-24!83;UBERON:0007282!1.17e-24!83;UBERON:0009618!1.17e-24!83;UBERON:0007285!1.17e-24!83;UBERON:0004290!2.69e-22!70;UBERON:0000486!4.58e-20!82;UBERON:0001134!1.39e-18!61;UBERON:0002036!1.39e-18!61;UBERON:0003082!1.39e-18!61;UBERON:0002385!1.84e-17!63;UBERON:0001015!1.84e-17!63;UBERON:0000383!1.84e-17!63;UBERON:0002384!7.77e-17!375;UBERON:0001637!1.46e-15!42;UBERON:0003509!1.46e-15!42;UBERON:0004572!1.46e-15!42;UBERON:0002204!4.49e-15!167;UBERON:0003081!6.09e-13!216;UBERON:0004573!2.12e-12!33;UBERON:0004571!2.12e-12!33;UBERON:0004872!3.91e-12!84;UBERON:0004535!4.51e-12!110;UBERON:0005256!1.35e-11!143;UBERON:0001009!4.29e-11!113;UBERON:0002049!5.67e-10!79;UBERON:0007798!5.67e-10!79;UBERON:0001981!7.14e-10!60;UBERON:0007500!7.14e-10!60;UBERON:0004537!7.14e-10!60;UBERON:0006965!7.14e-10!60;UBERON:0000055!1.62e-08!69;UBERON:0000926!2.51e-07!448;UBERON:0004120!2.51e-07!448;UBERON:0006603!2.51e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.09e-11;33!UBERON:0004571;3.09e-11;33!UBERON:0001637;3.74e-11;42!UBERON:0003509;3.74e-11;42!UBERON:0004572;3.74e-11;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.60e-23,78;UBERON:0002329,1.66e-22,71;UBERON:0003059,1.66e-22,71;UBERON:0007282,1.66e-22,71;UBERON:0004290,1.66e-22,71;UBERON:0009618,1.66e-22,71;UBERON:0007524,6.05e-22,73;UBERON:0003077,1.39e-21,72;UBERON:0007285,1.39e-21,72;UBERON:0000486,2.79e-20,83;UBERON:0001134,8.65e-19,62;UBERON:0002036,8.65e-19,62;UBERON:0003082,8.65e-19,62;UBERON:0002385,1.14e-17,64;UBERON:0001015,1.14e-17,64;UBERON:0000383,1.14e-17,64;UBERON:0002384,5.94e-17,371;UBERON:0002204,1.55e-16,167;UBERON:0000926,2.79e-16,315;UBERON:0004120,2.79e-16,315;UBERON:0006603,2.79e-16,315;UBERON:0001637,1.46e-15,42;UBERON:0003509,1.46e-15,42;UBERON:0004572,1.46e-15,42;UBERON:0003081,8.25e-13,203;UBERON:0004573,2.11e-12,33;UBERON:0004571,2.11e-12,33;UBERON:0004872,3.83e-12,83;UBERON:0004535,4.61e-12,109;UBERON:0001009,4.44e-11,112;UBERON:0002049,5.66e-10,78;UBERON:0007798,5.66e-10,78;UBERON:0007500,6.80e-10,59;UBERON:0001981,6.80e-10,59;UBERON:0004537,6.80e-10,59;UBERON:0006965,6.80e-10,59;UBERON:0005256,2.45e-09,122;UBERON:0000055,1.62e-08,68;UBERON:0003104,2.03e-08,160;UBERON:0009142,2.03e-08,160;UBERON:0000490,9.56e-08,148 | |||
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| ||
|short_description=p1@EMP3 | |short_description=p1@EMP3 | ||
}} | }} |
Latest revision as of 01:52, 19 September 2015
Short description: | p1@EMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EMP3_5end |
Coexpression cluster: | C3181_Mesenchymal_Smooth_Hair_Aortic_Fibroblast_Hepatic_tridermal |
Association with transcript: | 159bp_to_ENST00000270221, NM_001425, uc002piv.2_5end |
EntrezGene: | EMP3 |
HGNC: | 3335 |
UniProt: | P54852 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 3.21e-29 | 427 |
somatic stem cell | 8.38e-29 | 433 |
stem cell | 1.17e-26 | 441 |
muscle precursor cell | 2.31e-21 | 58 |
myoblast | 2.31e-21 | 58 |
multi-potent skeletal muscle stem cell | 2.31e-21 | 58 |
muscle cell | 2.46e-20 | 55 |
smooth muscle cell | 1.21e-19 | 43 |
smooth muscle myoblast | 1.21e-19 | 43 |
connective tissue cell | 1.08e-16 | 361 |
fibroblast | 2.01e-16 | 76 |
vascular associated smooth muscle cell | 2.13e-16 | 32 |
electrically responsive cell | 3.14e-16 | 61 |
electrically active cell | 3.14e-16 | 61 |
mesenchymal cell | 1.65e-14 | 354 |
mesodermal cell | 5.71e-14 | 121 |
motile cell | 5.78e-14 | 386 |
skin fibroblast | 3.05e-07 | 23 |