FFCP PHASE1:Hg19::chr1:155948898..155948955,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9181 | |EntrezGene=9181 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=682 | |HGNC=682 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000465079_5end | |association_with_transcript=0bp_to_ENST00000465079_5end | ||
|cluster_id=chr1:155948898..155948955,- | |||
|description=CAGE_peak_2_at_ARHGEF2_5end | |description=CAGE_peak_2_at_ARHGEF2_5end | ||
|id=chr1:155948898..155948955,- | |id=chr1:155948898..155948955,- | ||
|ontology_enrichment_celltype=CL:0000055!1.68e-16!180;CL:0000057!3.70e-14!75;CL:0002371!9.68e-14!591;CL:0000144!3.89e-13!625;CL:0000222!2.59e-11!119;CL:0000548!3.58e-11!679;CL:0000004!3.58e-11!679;CL:0000255!3.58e-11!679;CL:0000048!1.01e-10!430;CL:0000012!1.30e-10!682;CL:0000723!5.52e-10!436;CL:0000034!6.37e-09!444;CL:0000183!1.32e-08!59;CL:0002620!2.34e-08!23;CL:0000680!3.67e-08!57;CL:0000056!3.67e-08!57;CL:0000355!3.67e-08!57;CL:0000192!8.46e-08!42;CL:0000514!8.46e-08!42;CL:0000187!1.21e-07!54;CL:0002320!1.76e-07!365 | |ontology_enrichment_celltype=CL:0000055!1.68e-16!180;CL:0000057!3.70e-14!75;CL:0002371!9.68e-14!591;CL:0000144!3.89e-13!625;CL:0000222!2.59e-11!119;CL:0000548!3.58e-11!679;CL:0000004!3.58e-11!679;CL:0000255!3.58e-11!679;CL:0000048!1.01e-10!430;CL:0000012!1.30e-10!682;CL:0000723!5.52e-10!436;CL:0000034!6.37e-09!444;CL:0000183!1.32e-08!59;CL:0002620!2.34e-08!23;CL:0000680!3.67e-08!57;CL:0000056!3.67e-08!57;CL:0000355!3.67e-08!57;CL:0000192!8.46e-08!42;CL:0000514!8.46e-08!42;CL:0000187!1.21e-07!54;CL:0002320!1.76e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.61e-08;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.08e-14,76;CL:0000222,9.41e-12,121;CL:0000048,6.71e-11,427;CL:0000723,3.40e-10,433;CL:0000034,4.07e-09,441;CL:0000680,1.49e-08,58;CL:0000056,1.49e-08,58;CL:0000355,1.49e-08,58;CL:0002620,2.28e-08,23;CL:0000192,3.23e-08,43;CL:0000514,3.23e-08,43;CL:0000187,4.98e-08,55;CL:0002320,2.07e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!4.18e-09!143;UBERON:0004290!7.20e-09!70;UBERON:0002204!1.29e-08!167;UBERON:0000914!1.78e-08!83;UBERON:0002329!1.78e-08!83;UBERON:0003077!1.78e-08!83;UBERON:0003059!1.78e-08!83;UBERON:0007282!1.78e-08!83;UBERON:0009618!1.78e-08!83;UBERON:0007285!1.78e-08!83;UBERON:0002100!2.78e-08!216;UBERON:0000926!4.60e-08!448;UBERON:0004120!4.60e-08!448;UBERON:0006603!4.60e-08!448;UBERON:0002384!4.89e-08!375;UBERON:0001134!1.38e-07!61;UBERON:0002036!1.38e-07!61;UBERON:0003082!1.38e-07!61;UBERON:0000055!1.93e-07!69;UBERON:0002385!2.06e-07!63;UBERON:0001015!2.06e-07!63;UBERON:0000383!2.06e-07!63;UBERON:0004872!5.80e-07!84;UBERON:0002049!7.06e-07!79;UBERON:0007798!7.06e-07!79;UBERON:0000486!8.74e-07!82;UBERON:0001981!9.65e-07!60;UBERON:0007500!9.65e-07!60;UBERON:0004537!9.65e-07!60;UBERON:0006965!9.65e-07!60 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,4.64e-11,160;UBERON:0009142,4.64e-11,160;UBERON:0000926,1.34e-10,315;UBERON:0004120,1.34e-10,315;UBERON:0006603,1.34e-10,315;UBERON:0007503,1.41e-09,78;UBERON:0002204,2.71e-09,167;UBERON:0002329,2.98e-09,71;UBERON:0003059,2.98e-09,71;UBERON:0007282,2.98e-09,71;UBERON:0004290,2.98e-09,71;UBERON:0009618,2.98e-09,71;UBERON:0005256,6.43e-09,122;UBERON:0007524,6.45e-09,73;UBERON:0003077,6.63e-09,72;UBERON:0007285,6.63e-09,72;UBERON:0002384,5.80e-08,371;UBERON:0002100,5.80e-08,199;UBERON:0001134,5.88e-08,62;UBERON:0002036,5.88e-08,62;UBERON:0003082,5.88e-08,62;UBERON:0002385,8.92e-08,64;UBERON:0001015,8.92e-08,64;UBERON:0000383,8.92e-08,64;UBERON:0000055,2.91e-07,68;UBERON:0000486,4.17e-07,83;UBERON:0004872,8.49e-07,83 | |||
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| ||
|short_description=p2@ARHGEF2 | |short_description=p2@ARHGEF2 | ||
}} | }} |
Latest revision as of 14:01, 17 September 2015
Short description: | p2@ARHGEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARHGEF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000465079_5end |
EntrezGene: | ARHGEF2 |
HGNC: | 682 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.08e-14 | 76 |
mesodermal cell | 9.41e-12 | 121 |
multi fate stem cell | 6.71e-11 | 427 |
somatic stem cell | 3.40e-10 | 433 |
stem cell | 4.07e-09 | 441 |
muscle precursor cell | 1.49e-08 | 58 |
myoblast | 1.49e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.49e-08 | 58 |
skin fibroblast | 2.28e-08 | 23 |
smooth muscle cell | 3.23e-08 | 43 |
smooth muscle myoblast | 3.23e-08 | 43 |
muscle cell | 4.98e-08 | 55 |
connective tissue cell | 2.07e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 4.64e-11 | 160 |
entire embryonic mesenchyme | 4.64e-11 | 160 |
mesoderm | 1.34e-10 | 315 |
mesoderm-derived structure | 1.34e-10 | 315 |
presumptive mesoderm | 1.34e-10 | 315 |
epithelial vesicle | 1.41e-09 | 78 |
musculoskeletal system | 2.71e-09 | 167 |
somite | 2.98e-09 | 71 |
presomitic mesoderm | 2.98e-09 | 71 |
presumptive segmental plate | 2.98e-09 | 71 |
dermomyotome | 2.98e-09 | 71 |
trunk paraxial mesoderm | 2.98e-09 | 71 |
trunk mesenchyme | 6.43e-09 | 122 |
dense mesenchyme tissue | 6.45e-09 | 73 |
paraxial mesoderm | 6.63e-09 | 72 |
presumptive paraxial mesoderm | 6.63e-09 | 72 |
connective tissue | 5.80e-08 | 371 |
trunk | 5.80e-08 | 199 |
skeletal muscle tissue | 5.88e-08 | 62 |
striated muscle tissue | 5.88e-08 | 62 |
myotome | 5.88e-08 | 62 |
muscle tissue | 8.92e-08 | 64 |
musculature | 8.92e-08 | 64 |
musculature of body | 8.92e-08 | 64 |
vessel | 2.91e-07 | 68 |
multilaminar epithelium | 4.17e-07 | 83 |
splanchnic layer of lateral plate mesoderm | 8.49e-07 | 83 |