FFCP PHASE1:Hg19::chr19:47112998..47113020,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=808 | |EntrezGene=808 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1449 | |HGNC=1449 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AL050207_5end | |association_with_transcript=0bp_to_AL050207_5end | ||
|cluster_id=chr19:47112998..47113020,+ | |||
|description=CAGE_peak_17_at_CALM3_5end | |description=CAGE_peak_17_at_CALM3_5end | ||
|id=chr19:47112998..47113020,+ | |id=chr19:47112998..47113020,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!2.40e-12!34;UBERON:0001869!2.45e-12!32;UBERON:0002020!2.77e-12!34;UBERON:0003528!2.77e-12!34;UBERON:0002791!8.35e-12!33;UBERON:0000956!2.50e-10!25;UBERON:0000203!2.50e-10!25;UBERON:0002780!5.69e-10!41;UBERON:0001890!5.69e-10!41;UBERON:0006240!5.69e-10!41;UBERON:0002619!5.85e-10!22;UBERON:0001049!1.51e-09!57;UBERON:0005068!1.51e-09!57;UBERON:0006241!1.51e-09!57;UBERON:0007135!1.51e-09!57;UBERON:0001017!2.34e-09!82;UBERON:0003080!2.82e-09!42;UBERON:0005743!5.28e-09!86;UBERON:0001950!5.58e-09!20;UBERON:0002616!1.03e-08!59;UBERON:0000955!1.14e-08!69;UBERON:0006238!1.14e-08!69;UBERON:0003056!4.15e-08!61;UBERON:0003075!1.59e-07!86;UBERON:0007284!1.59e-07!86;UBERON:0000073!5.42e-07!94;UBERON:0001016!5.42e-07!94;UBERON:0002346!5.45e-07!90;UBERON:0000033!7.36e-07!123;UBERON:0000153!8.49e-07!129;UBERON:0007811!8.49e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.08e-18;22!UBERON:0001950;3.71e-18;20!UBERON:0000956;5.60e-16;25!UBERON:0000203;5.60e-16;25!UBERON:0001869;1.21e-13;32!UBERON:0001893;8.58e-13;34!UBERON:0002791;2.53e-12;32!UBERON:0003528;3.10e-11;34!UBERON:0002020;3.10e-11;34!UBERON:0002780;1.96e-08;41!UBERON:0001890;1.96e-08;41!UBERON:0002021;6.02e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.17e-19,22;UBERON:0001950,1.04e-18,20;UBERON:0000956,1.93e-16,25;UBERON:0000203,1.93e-16,25;UBERON:0001869,1.30e-15,32;UBERON:0001893,2.08e-14,34;UBERON:0002791,8.77e-14,32;UBERON:0003528,1.04e-12,34;UBERON:0002020,1.04e-12,34;UBERON:0002780,1.13e-12,41;UBERON:0001890,1.13e-12,41;UBERON:0003080,1.13e-12,41;UBERON:0006240,1.13e-12,41;UBERON:0001017,1.30e-11,81;UBERON:0000955,5.48e-10,68;UBERON:0006238,5.48e-10,68;UBERON:0001049,7.32e-10,56;UBERON:0005068,7.32e-10,56;UBERON:0006241,7.32e-10,56;UBERON:0007135,7.32e-10,56;UBERON:0001016,1.06e-09,89;UBERON:0000073,1.20e-09,53;UBERON:0002616,1.20e-09,53;UBERON:0003056,7.02e-09,61;UBERON:0003075,4.99e-08,82;UBERON:0007284,4.99e-08,82;UBERON:0002346,2.29e-07,86;UBERON:0002021,4.24e-07,5 | |||
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| ||
|short_description=p17@CALM3 | |short_description=p17@CALM3 | ||
}} | }} |
Latest revision as of 21:08, 18 September 2015
Short description: | p17@CALM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_CALM3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AL050207_5end |
EntrezGene: | CALM3 |
HGNC: | 1449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 3.17e-19 | 22 |
neocortex | 1.04e-18 | 20 |
cerebral cortex | 1.93e-16 | 25 |
pallium | 1.93e-16 | 25 |
cerebral hemisphere | 1.30e-15 | 32 |
telencephalon | 2.08e-14 | 34 |
regional part of telencephalon | 8.77e-14 | 32 |
brain grey matter | 1.04e-12 | 34 |
gray matter | 1.04e-12 | 34 |
regional part of forebrain | 1.13e-12 | 41 |
forebrain | 1.13e-12 | 41 |
anterior neural tube | 1.13e-12 | 41 |
future forebrain | 1.13e-12 | 41 |
central nervous system | 1.30e-11 | 81 |
brain | 5.48e-10 | 68 |
future brain | 5.48e-10 | 68 |
neural tube | 7.32e-10 | 56 |
neural rod | 7.32e-10 | 56 |
future spinal cord | 7.32e-10 | 56 |
neural keel | 7.32e-10 | 56 |
nervous system | 1.06e-09 | 89 |
regional part of nervous system | 1.20e-09 | 53 |
regional part of brain | 1.20e-09 | 53 |
pre-chordal neural plate | 7.02e-09 | 61 |
neural plate | 4.99e-08 | 82 |
presumptive neural plate | 4.99e-08 | 82 |
neurectoderm | 2.29e-07 | 86 |
occipital lobe | 4.24e-07 | 5 |