FFCP PHASE1:Hg19::chr19:54567035..54567060,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284415 | |EntrezGene=284415 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29455 | |HGNC=29455 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZW9 | |UniProt=F5GZW9 | ||
|association_with_transcript=0bp_to_ENST00000366170,ENST00000425006_5end | |association_with_transcript=0bp_to_ENST00000366170,ENST00000425006_5end | ||
|cluster_id=chr19:54567035..54567060,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_3_at_VSTM1_5end | |description=CAGE_peak_3_at_VSTM1_5end | ||
|id=chr19:54567035..54567060,- | |id=chr19:54567035..54567060,- | ||
|ontology_enrichment_celltype=CL:0002057!1.19e-94!42;CL:0000860!1.79e-87!45;CL:0000766!6.80e-77!76;CL:0002194!1.38e-69!63;CL:0000576!1.38e-69!63;CL:0000040!1.38e-69!63;CL:0000559!1.38e-69!63;CL:0000763!2.58e-68!112;CL:0000049!2.58e-68!112;CL:0002009!4.63e-67!65;CL:0000839!2.27e-61!70;CL:0000557!2.51e-60!71;CL:0000037!1.73e-53!172;CL:0000566!1.73e-53!172;CL:0000738!2.04e-50!140;CL:0000988!1.42e-49!182;CL:0002032!3.10e-49!165;CL:0000837!3.10e-49!165;CL:0002087!2.09e-44!119;CL:0002031!9.46e-37!124;CL:0002393!2.68e-19!9;CL:0002397!2.68e-19!9;CL:0000134!4.61e-18!358;CL:0002320!2.26e-17!365;CL:0000219!6.00e-15!390;CL:0000094!1.45e-14!8;CL:0000048!4.58e-12!430;CL:0000034!9.54e-12!444;CL:0000723!1.17e-11!436;CL:0000081!2.97e-10!11;CL:0000767!2.70e-08!3;CL:0000775!8.08e-08!3;CL:0000842!3.56e-07!3;CL:0000875!4.07e-07!3;CL:0002396!4.07e-07!3 | |ontology_enrichment_celltype=CL:0002057!1.19e-94!42;CL:0000860!1.79e-87!45;CL:0000766!6.80e-77!76;CL:0002194!1.38e-69!63;CL:0000576!1.38e-69!63;CL:0000040!1.38e-69!63;CL:0000559!1.38e-69!63;CL:0000763!2.58e-68!112;CL:0000049!2.58e-68!112;CL:0002009!4.63e-67!65;CL:0000839!2.27e-61!70;CL:0000557!2.51e-60!71;CL:0000037!1.73e-53!172;CL:0000566!1.73e-53!172;CL:0000738!2.04e-50!140;CL:0000988!1.42e-49!182;CL:0002032!3.10e-49!165;CL:0000837!3.10e-49!165;CL:0002087!2.09e-44!119;CL:0002031!9.46e-37!124;CL:0002393!2.68e-19!9;CL:0002397!2.68e-19!9;CL:0000134!4.61e-18!358;CL:0002320!2.26e-17!365;CL:0000219!6.00e-15!390;CL:0000094!1.45e-14!8;CL:0000048!4.58e-12!430;CL:0000034!9.54e-12!444;CL:0000723!1.17e-11!436;CL:0000081!2.97e-10!11;CL:0000767!2.70e-08!3;CL:0000775!8.08e-08!3;CL:0000842!3.56e-07!3;CL:0000875!4.07e-07!3;CL:0002396!4.07e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.16e-92;33!CL:0002057;1.16e-92;33!CL:0000473;3.85e-72;39!CL:0000234;3.85e-72;39!CL:0000576;1.20e-61;48!CL:0000766;2.14e-43;69!CL:0000763;5.86e-28;100!CL:0002393;4.60e-18;6!CL:0002397;4.60e-18;6!CL:0000094;1.76e-14;8!CL:0002087;1.96e-14;104!CL:0000738;2.11e-11;136!CL:0000767;1.28e-10;3!CL:0000081;2.48e-10;11!CL:0000988;2.29e-09;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.30e-115,42;CL:0002057,1.30e-115,42;CL:0000473,6.19e-110,48;CL:0000234,6.19e-110,48;CL:0000766,2.11e-92,72;CL:0002194,8.60e-86,59;CL:0000576,8.60e-86,59;CL:0000040,8.60e-86,59;CL:0000559,8.60e-86,59;CL:0002009,1.12e-82,61;CL:0000839,1.06e-75,66;CL:0000763,1.13e-75,108;CL:0000049,1.13e-75,108;CL:0000557,1.98e-74,67;CL:0000037,2.72e-50,168;CL:0000738,3.91e-50,136;CL:0002032,7.65e-49,161;CL:0000837,7.65e-49,161;CL:0000988,4.15e-47,177;CL:0002087,1.17e-45,115;CL:0002031,4.18e-39,120;CL:0000134,2.93e-17,354;CL:0002320,1.12e-16,361;CL:0002393,8.45e-16,9;CL:0002397,8.45e-16,9;CL:0000219,1.25e-14,386;CL:0000094,1.34e-14,8;CL:0000048,3.97e-12,427;CL:0000723,8.78e-12,433;CL:0000034,2.45e-11,441;CL:0000767,1.30e-10,3;CL:0000081,2.05e-10,11 | |||
|ontology_enrichment_development_v019=CL:0002057;6.63e-83;42!CL:0000049;5.29e-22;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.32e-67!102;UBERON:0003061!4.32e-67!102;UBERON:0002193!1.04e-59!112;UBERON:0002371!4.20e-52!80;UBERON:0001474!1.43e-47!86;UBERON:0004765!1.37e-38!101;UBERON:0001434!1.37e-38!101;UBERON:0002405!2.69e-37!115;UBERON:0003081!1.57e-25!216;UBERON:0002204!2.55e-18!167;UBERON:0002384!1.96e-16!375;UBERON:0000178!3.58e-16!15;UBERON:0000179!3.58e-16!15;UBERON:0000463!3.58e-16!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.77e-15;15!UBERON:0000179;6.77e-15;15!UBERON:0000463;6.77e-15;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.37e-73,98;UBERON:0003061,3.37e-73,98;UBERON:0002193,2.22e-65,108;UBERON:0002371,1.80e-64,76;UBERON:0001474,4.94e-59,82;UBERON:0004765,6.75e-53,90;UBERON:0002405,7.25e-51,93;UBERON:0001434,1.35e-46,100;UBERON:0003081,2.53e-29,203;UBERON:0002204,9.02e-24,167;UBERON:0002384,6.93e-16,371;UBERON:0000178,8.10e-15,15;UBERON:0000179,8.10e-15,15;UBERON:0000463,8.10e-15,15;UBERON:0000926,1.09e-14,315;UBERON:0004120,1.09e-14,315;UBERON:0006603,1.09e-14,315 | |||
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| ||
|short_description=p3@VSTM1 | |short_description=p3@VSTM1 | ||
}} | }} |
Latest revision as of 20:58, 19 September 2015
Short description: | p3@VSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VSTM1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000366170, ENST00000425006_5end |
EntrezGene: | VSTM1 |
HGNC: | 29455 |
UniProt: | F5GZW9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.37e-73 | 98 |
blood island | 3.37e-73 | 98 |
hemolymphoid system | 2.22e-65 | 108 |
bone marrow | 1.80e-64 | 76 |
bone element | 4.94e-59 | 82 |
skeletal element | 6.75e-53 | 90 |
immune system | 7.25e-51 | 93 |
skeletal system | 1.35e-46 | 100 |
lateral plate mesoderm | 2.53e-29 | 203 |
musculoskeletal system | 9.02e-24 | 167 |
connective tissue | 6.93e-16 | 371 |
blood | 8.10e-15 | 15 |
haemolymphatic fluid | 8.10e-15 | 15 |
organism substance | 8.10e-15 | 15 |
mesoderm | 1.09e-14 | 315 |
mesoderm-derived structure | 1.09e-14 | 315 |
presumptive mesoderm | 1.09e-14 | 315 |