FFCP PHASE1:Hg19::chr12:54362447..54362462,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:54362447..54362462,-
|short_description=p1@HOTAIR
|description=CAGE_peak_1_at_HOTAIR_5end
|association_with_transcript=52bp_to_NR_003716,uc009zne.2_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=100124700 | |EntrezGene=100124700 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=33510 | |HGNC=33510 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=52bp_to_NR_003716,uc009zne.2_5end | |||
|cluster_id=chr12:54362447..54362462,- | |||
|description=CAGE_peak_1_at_HOTAIR_5end | |||
|id=chr12:54362447..54362462,- | |||
|ontology_enrichment_celltype=CL:0002594!5.16e-12!4;CL:0000188!1.71e-10!9;CL:0002150!1.59e-07!3;CL:0000861!1.59e-07!3;CL:0002569!3.42e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002594;3.97e-28;4!CL:0000188;1.80e-18;9!CL:0000680;6.08e-16;7!CL:0002588;4.31e-14;2!CL:0000594;6.70e-10;3!CL:0000228;2.27e-08;1!CL:0002372;2.27e-08;1!CL:0000056;5.41e-08;4!CL:0000187;2.78e-07;55!CL:0000393;8.43e-07;61!CL:0000211;8.43e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002594,4.91e-28,4;CL:0000188,1.68e-18,9;CL:0000680,1.51e-14,58;CL:0000056,1.51e-14,58;CL:0000355,1.51e-14,58;CL:0002588,5.28e-14,2;CL:0000187,7.73e-13,55;CL:0000393,2.21e-11,61;CL:0000211,2.21e-11,61;CL:0000594,4.79e-10,3;CL:0000228,2.35e-08,1;CL:0002372,2.35e-08,1;CL:0000222,3.27e-08,121;CL:0000515,5.23e-08,4;CL:0000359,3.93e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;5.70e-09;58!CL:0000515;5.41e-08;4 | |||
|ontology_enrichment_disease=DOID:171!5.02e-12!10 | |||
|ontology_enrichment_disease_v019=DOID:171;4.67e-11;10!DOID:1192;5.86e-10;3!DOID:1115;3.00e-08;20!DOID:3369;6.85e-08;1!DOID:3095;1.77e-07;22!DOID:2994;1.77e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.61e-11,10;DOID:1192,6.28e-10,3;DOID:1115,3.25e-08,20;DOID:3369,7.59e-08,1;DOID:3095,1.56e-07,22;DOID:2994,1.56e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001310!5.16e-12!4;UBERON:0004290!1.11e-07!70;UBERON:0003422!3.42e-07!6;UBERON:0002385!6.34e-07!63;UBERON:0001015!6.34e-07!63;UBERON:0000383!6.34e-07!63;UBERON:0000486!7.43e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001310;3.97e-28;4!UBERON:0010260;8.26e-27;9!UBERON:0002346;9.45e-16;4!UBERON:0000923;9.45e-16;4!UBERON:0010316;9.45e-16;4!UBERON:0005291;9.45e-16;4!UBERON:0001134;9.96e-15;16!UBERON:0002036;9.96e-15;16!UBERON:0002050;1.04e-12;5!UBERON:0005423;1.04e-12;5!UBERON:0002385;2.16e-07;31!UBERON:0001015;2.16e-07;31!UBERON:0000383;2.16e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001310,4.91e-28,4;UBERON:0010260,1.09e-26,9;UBERON:0001134,1.83e-13,62;UBERON:0002036,1.83e-13,62;UBERON:0003082,1.83e-13,62;UBERON:0002385,5.66e-13,64;UBERON:0001015,5.66e-13,64;UBERON:0000383,5.66e-13,64;UBERON:0002329,1.79e-11,71;UBERON:0003059,1.79e-11,71;UBERON:0007282,1.79e-11,71;UBERON:0004290,1.79e-11,71;UBERON:0009618,1.79e-11,71;UBERON:0000486,2.58e-11,83;UBERON:0003077,2.77e-11,72;UBERON:0007285,2.77e-11,72;UBERON:0007524,4.24e-11,73;UBERON:0007503,3.03e-10,78 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587172493218824,0.323745888736263,0.140450806702248,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54584324027377,0.558350568994769,0,0,0,0,0,0,0,3.56077243852024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411309970813294,0,0,0,0,0,0.517086863031111,0,0,0.26593811658487,0,0,0,0.266422179016099,0,0.542621605391443,1.64648067356154,0,0,0.791951872933429,0,0,0,0,0,0,0,0,4.27910715122155,0,5.95881335396112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0.695068915744663,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16004861950546,0,0,0.275673144969061,1.82614416276065,2.90033387828457,0,1.51354460599453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,3.24656603140326,5.26699946769575,2.53526042279017,1.14729081763241,1.67023369722306,4.63672366925625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90012867315194,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0.787139999965761,0,0,0,0,0,1.74962768029953,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0.311064574191741,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.19351266257817,0.146178634172371,0.164230914106418,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0.951329442515298,1.35983700206033,0.305994652908965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07453304648892,0,0,0,0,0,0,0,0,0,0,0,0,0.982829546539238,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0,1.18812770967818,5.95209776284712,1.73510069962603,3.35186950783946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0.703484977438482,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,1.04617282831313,1.73858272302579,0,0,0,0,0,0,0,0,0,0,0,0,2.84635677484205,0,0,0.102662806856247,0,0.485710993059139,0,0.397901550322736,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,5.67977623895465,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9307228228694,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p1@HOTAIR | |||
}} | }} |
Latest revision as of 04:14, 19 September 2015
Short description: | p1@HOTAIR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOTAIR_5end |
Coexpression cluster: | NA |
Association with transcript: | 52bp_to_NR_003716, uc009zne.2_5end |
EntrezGene: | HOTAIR |
HGNC: | 33510 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the umbilical artery | 4.91e-28 | 4 |
cell of skeletal muscle | 1.68e-18 | 9 |
muscle precursor cell | 1.51e-14 | 58 |
myoblast | 1.51e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.51e-14 | 58 |
smooth muscle cell of the umbilical vein | 5.28e-14 | 2 |
muscle cell | 7.73e-13 | 55 |
electrically responsive cell | 2.21e-11 | 61 |
electrically active cell | 2.21e-11 | 61 |
skeletal muscle satellite cell | 4.79e-10 | 3 |
multinucleate cell | 2.35e-08 | 1 |
myotube | 2.35e-08 | 1 |
mesodermal cell | 3.27e-08 | 121 |
skeletal muscle myoblast | 5.23e-08 | 4 |
vascular associated smooth muscle cell | 3.93e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
umbilical artery | 4.91e-28 | 4 |
umbilical blood vessel | 1.09e-26 | 9 |
skeletal muscle tissue | 1.83e-13 | 62 |
striated muscle tissue | 1.83e-13 | 62 |
myotome | 1.83e-13 | 62 |
muscle tissue | 5.66e-13 | 64 |
musculature | 5.66e-13 | 64 |
musculature of body | 5.66e-13 | 64 |
somite | 1.79e-11 | 71 |
presomitic mesoderm | 1.79e-11 | 71 |
presumptive segmental plate | 1.79e-11 | 71 |
dermomyotome | 1.79e-11 | 71 |
trunk paraxial mesoderm | 1.79e-11 | 71 |
multilaminar epithelium | 2.58e-11 | 83 |
paraxial mesoderm | 2.77e-11 | 72 |
presumptive paraxial mesoderm | 2.77e-11 | 72 |
dense mesenchyme tissue | 4.24e-11 | 73 |
epithelial vesicle | 3.03e-10 | 78 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.61e-11 | 10 |
peripheral nervous system neoplasm | 6.28e-10 | 3 |
sarcoma | 3.25e-08 | 20 |
peripheral primitive neuroectodermal tumor | 7.59e-08 | 1 |
germ cell and embryonal cancer | 1.56e-07 | 22 |
germ cell cancer | 1.56e-07 | 22 |