FFCP PHASE1:Hg19::chr1:172134783..172134793,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:172134783..172134793,+ | |||
|coexpression_cluster_id=C321 | |||
|description=CAGE_peak_at_chr1:172134783..172134793,+ | |description=CAGE_peak_at_chr1:172134783..172134793,+ | ||
|id=chr1:172134783..172134793,+ | |id=chr1:172134783..172134793,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.66e-30;9!CL:0000447;2.66e-30;9!CL:0000214;2.62e-23;3!CL:0000327;1.04e-18;15!CL:0000138;2.45e-12;6!CL:0000499;1.40e-10;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.66e-30,9;CL:0000447,2.66e-30,9;CL:0000214,2.62e-23,3;CL:0000327,1.04e-18,15;CL:0000058,2.45e-12,6;CL:0000138,2.45e-12,6;CL:0000499,1.40e-10,28;CL:0000151,1.78e-08,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!1.82e-13!1;DOID:4549!1.82e-13!1;DOID:5861!1.82e-13!1;DOID:6496!1.82e-13!1;DOID:0050619!4.77e-13!1;DOID:1357!4.77e-13!1 | |ontology_enrichment_disease=DOID:3371!1.82e-13!1;DOID:4549!1.82e-13!1;DOID:5861!1.82e-13!1;DOID:6496!1.82e-13!1;DOID:0050619!4.77e-13!1;DOID:1357!4.77e-13!1 | ||
|ontology_enrichment_disease_v019=DOID:3371;2.39e-66;1!DOID:4549;2.39e-66;1!DOID:5861;2.39e-66;1!DOID:6496;2.39e-66;1!DOID:1115;2.41e-14;20!DOID:201;2.45e-12;6!DOID:0060100;2.45e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.39e-66,1;DOID:4549,2.39e-66,1;DOID:5861,2.39e-66,1;DOID:6496,2.39e-66,1;DOID:1115,2.41e-14,20;DOID:201,2.45e-12,6;DOID:0060100,2.45e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0001154!2.62e-13!1;UBERON:0001153!2.62e-13!1;UBERON:0001764!4.77e-13!1;UBERON:0001825!4.77e-13!1;UBERON:0002336!8.64e-13!1;UBERON:0001018!8.64e-13!1;UBERON:0002473!8.64e-13!1;UBERON:0005340!8.64e-13!1;UBERON:0002316!8.64e-13!1;UBERON:0003544!8.64e-13!1;UBERON:0001020!8.64e-13!1;UBERON:0005970!8.64e-13!1;UBERON:0002437!8.64e-13!1;UBERON:0002363!1.09e-12!1;UBERON:0007647!1.09e-12!1;UBERON:0010115!1.09e-12!1;UBERON:0005162!4.98e-07!2;UBERON:0000122!4.98e-07!2;UBERON:0002360!5.60e-07!2;UBERON:0000094!5.60e-07!2;UBERON:0007645!5.60e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0006915;2.62e-23;3!UBERON:0007616;2.62e-23;3!UBERON:0002217;2.62e-23;3!UBERON:0002018;2.62e-23;3!UBERON:0002418;3.27e-23;3!UBERON:0004755;3.27e-23;3!UBERON:0000945;1.83e-14;5!UBERON:0010039;1.83e-14;5!UBERON:0004905;1.24e-09;8!UBERON:0000982;1.24e-09;8!UBERON:0004770;1.24e-09;8!UBERON:0004457;1.04e-08;9!UBERON:0000042;1.04e-08;9!UBERON:0001434;2.44e-07;36!UBERON:0000486;7.48e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,2.62e-23,3;UBERON:0007616,2.62e-23,3;UBERON:0002217,2.62e-23,3;UBERON:0002018,2.62e-23,3;UBERON:0002418,3.27e-23,3;UBERON:0004755,3.27e-23,3;UBERON:0004905,1.24e-09,8;UBERON:0000982,1.24e-09,8;UBERON:0004770,1.24e-09,8;UBERON:0000945,1.47e-09,8;UBERON:0010039,1.47e-09,8;UBERON:0004457,7.48e-07,12;UBERON:0000042,7.48e-07,12 | |||
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|short_description=p@chr1:172134783..172134793,+ | |short_description=p@chr1:172134783..172134793,+ | ||
}} | }} |
Latest revision as of 00:25, 28 July 2015
Short description: | p@chr1:172134783..172134793, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:172134783..172134793, + |
Coexpression cluster: | C321_synovial_anaplastic_maxillary_glassy_keratoacanthoma_rhabdomyosarcoma_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.66e-30 | 9 |
carbohydrate secreting cell | 2.66e-30 | 9 |
synovial cell | 2.62e-23 | 3 |
extracellular matrix secreting cell | 1.04e-18 | 15 |
chondroblast | 2.45e-12 | 6 |
chondrocyte | 2.45e-12 | 6 |
stromal cell | 1.40e-10 | 28 |
secretory cell | 1.78e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 2.62e-23 | 3 |
layer of synovial tissue | 2.62e-23 | 3 |
synovial joint | 2.62e-23 | 3 |
synovial membrane of synovial joint | 2.62e-23 | 3 |
cartilage tissue | 3.27e-23 | 3 |
skeletal tissue | 3.27e-23 | 3 |
articulation | 1.24e-09 | 8 |
skeletal joint | 1.24e-09 | 8 |
articular system | 1.24e-09 | 8 |
stomach | 1.47e-09 | 8 |
food storage organ | 1.47e-09 | 8 |
cavity lining | 7.48e-07 | 12 |
serous membrane | 7.48e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.39e-66 | 1 |
extraosseous chondrosarcoma | 2.39e-66 | 1 |
myxoid chondrosarcoma | 2.39e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 2.39e-66 | 1 |
sarcoma | 2.41e-14 | 20 |
connective tissue cancer | 2.45e-12 | 6 |
musculoskeletal system cancer | 2.45e-12 | 6 |