FFCP PHASE1:Hg19::chr12:89847483..89847491,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:89847483..89847491,-
|short_description=p@chr12:89847483..89847491,-
|description=CAGE_peak_at_chr12:89847483..89847491,-
|association_with_transcript=NA
...") |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:89847483..89847491,- | |||
|coexpression_cluster_id=C82 | |||
|description=CAGE_peak_at_chr12:89847483..89847491,- | |||
|id=chr12:89847483..89847491,- | |||
|ontology_enrichment_celltype=CL:0002057!2.51e-18!42;CL:0000860!1.24e-16!45;CL:0002393!4.40e-14!9;CL:0002397!4.40e-14!9;CL:0002320!1.10e-13!365;CL:0000134!3.42e-13!358;CL:0000766!4.34e-13!76;CL:0000219!2.73e-11!390;CL:0000839!4.82e-11!70;CL:0000557!8.64e-11!71;CL:0002194!1.09e-10!63;CL:0000576!1.09e-10!63;CL:0000040!1.09e-10!63;CL:0000559!1.09e-10!63;CL:0002009!3.66e-10!65;CL:0000034!1.28e-09!444;CL:0000048!1.66e-09!430;CL:0000723!4.29e-09!436;CL:0000767!1.76e-07!3;CL:0000763!4.73e-07!112;CL:0000049!4.73e-07!112;CL:0000738!8.34e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0002393;1.47e-28;6!CL:0002397;1.47e-28;6!CL:0000767;5.79e-22;3!CL:0002195;4.03e-14;2!CL:0002571;4.03e-14;2!CL:0000576;2.39e-11;48!CL:0000766;1.69e-09;69!CL:0000094;1.51e-08;8!CL:0000037;6.62e-08;1!CL:0001024;6.62e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002393,5.54e-27,9;CL:0002397,5.54e-27,9;CL:0000767,5.62e-22,3;CL:0000766,7.73e-18,72;CL:0000860,2.67e-17,42;CL:0002057,2.67e-17,42;CL:0000473,6.84e-15,48;CL:0000234,6.84e-15,48;CL:0002195,4.62e-14,2;CL:0002571,4.62e-14,2;CL:0000839,4.14e-12,66;CL:0000557,6.72e-12,67;CL:0002194,1.61e-11,59;CL:0000576,1.61e-11,59;CL:0000040,1.61e-11,59;CL:0000559,1.61e-11,59;CL:0002009,4.37e-11,61;CL:0000763,5.70e-11,108;CL:0000049,5.70e-11,108;CL:0000134,6.83e-10,354;CL:0002320,1.33e-09,361;CL:0000219,1.41e-08,386;CL:0000094,1.49e-08,8;CL:0000738,3.91e-08,136;CL:0001024,5.05e-08,1;CL:0000034,8.80e-08,441;CL:0000048,2.53e-07,427;CL:0000723,3.77e-07,433;CL:0000037,4.72e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;2.08e-12;42!UBERON:0010115;2.90e-08;1 | |||
|ontology_enrichment_disease=DOID:2394!3.80e-14!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.42e-13!375;UBERON:0002371!6.38e-12!80;UBERON:0001474!2.23e-11!86;UBERON:0004765!4.92e-10!101;UBERON:0001434!4.92e-10!101;UBERON:0002390!3.28e-09!102;UBERON:0003061!3.28e-09!102;UBERON:0002405!6.85e-09!115;UBERON:0002193!2.07e-08!112;UBERON:0000992!2.06e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0002363;2.90e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.66e-16,76;UBERON:0001474,4.23e-15,82;UBERON:0004765,1.63e-13,90;UBERON:0002405,5.46e-13,93;UBERON:0002390,3.47e-12,98;UBERON:0003061,3.47e-12,98;UBERON:0001434,6.92e-12,100;UBERON:0002193,8.44e-11,108;UBERON:0002384,3.32e-09,371;UBERON:0002363,3.11e-08,1;UBERON:0007645,3.11e-08,1;UBERON:0007647,3.11e-08,1;UBERON:0010115,3.11e-08,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32700704533794,11.5148819429164,6.65709330259127,0,0,0,0,0,1.46800219667424,3.32397245119126,0.802177789880567,4.12320654360118,0,0,0,0,0,0.242584061187816,0,0,0.929119112685311,0.575384784644301,0.256160706529101,1.18241114944293,0,0,1.35426486594342,0.376484679085209,0,0.449446968890169,0.612167784741805,0,0,0,0,0,0,0,0,0.251248665256743,1.0429658368404,1.08594422352558,0,0,0,2.74631872205524,1.4882300997553,2.51590374610051,0.22465726229299,1.80212271409808,0.803627933485401,1.42506371870624,0,0.730656615058536,0,0,0,0,0,0,0,0,0.569212969109448,0,0,2.64342657158052,0,0.263384084775077,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05927344650575,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0.900273288253207,0,1.54584324027377,0,0,0,0.757301322732344,0,0,1.77504796258307,0.302256294682921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29707958075265,0.37872730027914,0.063497894292169,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,1.42977993658148,0,0,0,1.06617584622764,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0.114814448164607,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21153028699708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0,0,0.496166021811951,0,0,0,2.1760712134779,0.2506898940227,0.919036730290385,1.31149052283922,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.298509605773748,0,0.554805861502613,0,1.25783950876288,1.77962244319307,0.686520205190771,1.05861646634267,0,0.591420599958536,0.477890301491107,0,0.931577741257556,0.414706207840855,0.797525143673985,1.04349012362347,3.45592500693602,0.761610424337591,0.406870733204662,0.727394636810238,0.107410557042488,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32700704533794,11.5148819429164,6.65709330259127,0,0,0,0,0,1.46800219667424,3.32397245119126,0.802177789880567,4.12320654360118,0,0,0,0,0,0.242584061187816,0,0,0.929119112685311,0.575384784644301,0.256160706529101,1.18241114944293,0,0,1.35426486594342,0.376484679085209,0,0.449446968890169,0.612167784741805,0,0,0,0,0,0,0,0,0.251248665256743,1.0429658368404,1.08594422352558,0,0,0,2.74631872205524,1.4882300997553,2.51590374610051,0.22465726229299,1.80212271409808,0.803627933485401,1.42506371870624,0,0.730656615058536,0,0,0,0,0,0,0,0,0.569212969109448,0,0,2.64342657158052,0,0.263384084775077,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05927344650575,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0.900273288253207,0,1.54584324027377,0,0,0,0.757301322732344,0,0,1.77504796258307,0.302256294682921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29707958075265,0.37872730027914,0.063497894292169,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,1.42977993658148,0,0,0,1.06617584622764,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0,0.114814448164607,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21153028699708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0,0,0.496166021811951,0,0,0,2.1760712134779,0.2506898940227,0.919036730290385,1.31149052283922,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.298509605773748,0,0.554805861502613,0,1.25783950876288,1.77962244319307,0.686520205190771,1.05861646634267,0,0.591420599958536,0.477890301491107,0,0.931577741257556,0.414706207840855,0.797525143673985,1.04349012362347,3.45592500693602,0.761610424337591,0.406870733204662,0.727394636810238,0.107410557042488,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:89847483..89847491,- | |||
}} | }} |
Latest revision as of 13:17, 24 July 2015
Short description: | p@chr12:89847483..89847491, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:89847483..89847491, - |
Coexpression cluster: | C82_Basophils_CD14_Eosinophils_Natural_Peripheral_immature_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intermediate monocyte | 5.54e-27 | 9 |
CD14-positive, CD16-positive monocyte | 5.54e-27 | 9 |
basophil | 5.62e-22 | 3 |
myeloid leukocyte | 7.73e-18 | 72 |
classical monocyte | 2.67e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.67e-17 | 42 |
defensive cell | 6.84e-15 | 48 |
phagocyte | 6.84e-15 | 48 |
hepatic stem cell | 4.62e-14 | 2 |
hepatic mesenchymal stem cell | 4.62e-14 | 2 |
myeloid lineage restricted progenitor cell | 4.14e-12 | 66 |
granulocyte monocyte progenitor cell | 6.72e-12 | 67 |
monopoietic cell | 1.61e-11 | 59 |
monocyte | 1.61e-11 | 59 |
monoblast | 1.61e-11 | 59 |
promonocyte | 1.61e-11 | 59 |
macrophage dendritic cell progenitor | 4.37e-11 | 61 |
myeloid cell | 5.70e-11 | 108 |
common myeloid progenitor | 5.70e-11 | 108 |
mesenchymal cell | 6.83e-10 | 354 |
connective tissue cell | 1.33e-09 | 361 |
motile cell | 1.41e-08 | 386 |
granulocyte | 1.49e-08 | 8 |
leukocyte | 3.91e-08 | 136 |
CD34-positive, CD38-negative hematopoietic stem cell | 5.05e-08 | 1 |
stem cell | 8.80e-08 | 441 |
multi fate stem cell | 2.53e-07 | 427 |
somatic stem cell | 3.77e-07 | 433 |
hematopoietic stem cell | 4.72e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.66e-16 | 76 |
bone element | 4.23e-15 | 82 |
skeletal element | 1.63e-13 | 90 |
immune system | 5.46e-13 | 93 |
hematopoietic system | 3.47e-12 | 98 |
blood island | 3.47e-12 | 98 |
skeletal system | 6.92e-12 | 100 |
hemolymphoid system | 8.44e-11 | 108 |
connective tissue | 3.32e-09 | 371 |
dura mater | 3.11e-08 | 1 |
future meninx | 3.11e-08 | 1 |
ectomeninx | 3.11e-08 | 1 |
future dura mater | 3.11e-08 | 1 |