FFCP PHASE1:Hg19::chr2:227187108..227187109,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:227187108..227187109,- | |||
|description=CAGE_peak_at_chr2:227187108..227187109,- | |description=CAGE_peak_at_chr2:227187108..227187109,- | ||
|id=chr2:227187108..227187109,- | |id=chr2:227187108..227187109,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.41e-09;3!CL:0002368;1.36e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.67e-09,3;CL:0002368,1.42e-08,13 | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.92e-26;1!UBERON:0003056;1.41e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4468;6.43e-14;2!DOID:3910;1.07e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,6.43e-14,2;DOID:3910,1.37e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0002046!7.08e-07!5;UBERON:0004117!7.08e-07!5;UBERON:0007689!7.08e-07!5;UBERON:0007123!7.08e-07!5;UBERON:0003091!7.08e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;5.92e-26;1!UBERON:0001785;5.92e-26;1!UBERON:0002464;5.92e-26;1!UBERON:0004904;5.92e-26;1!UBERON:0001021;5.92e-26;1!UBERON:0004903;1.07e-13;2!UBERON:0003714;1.07e-13;2!UBERON:0005162;1.07e-13;2!UBERON:0000122;1.07e-13;2!UBERON:0002173;1.07e-13;2!UBERON:0002186;1.07e-13;2!UBERON:0004821;1.41e-09;3!UBERON:0007499;1.41e-09;3!UBERON:0003215;1.41e-09;3!UBERON:0010368;1.41e-09;3!UBERON:0009911;1.41e-09;3!UBERON:0002299;1.41e-09;3!UBERON:0006524;1.41e-09;3!UBERON:0008874;1.41e-09;3!UBERON:0002169;1.41e-09;3!UBERON:0004894;1.41e-09;3!UBERON:0001052;1.69e-07;4!UBERON:0009856;1.69e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.58e-26,1;UBERON:0001785,3.58e-26,1;UBERON:0002464,3.58e-26,1;UBERON:0004904,3.58e-26,1;UBERON:0001021,3.58e-26,1;UBERON:0003902,3.58e-26,1;UBERON:0005425,3.58e-26,1;UBERON:0003714,8.28e-14,2;UBERON:0005162,8.28e-14,2;UBERON:0000122,8.28e-14,2;UBERON:0004903,1.37e-13,2;UBERON:0002173,1.37e-13,2;UBERON:0002186,1.37e-13,2;UBERON:0004821,1.67e-09,3;UBERON:0003215,1.67e-09,3;UBERON:0010368,1.67e-09,3;UBERON:0009911,1.67e-09,3;UBERON:0002299,1.67e-09,3;UBERON:0006524,1.67e-09,3;UBERON:0008874,1.67e-09,3;UBERON:0002169,1.67e-09,3;UBERON:0004894,1.67e-09,3;UBERON:0001052,1.40e-07,4;UBERON:0001781,1.49e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0.157421562627358,0,0.383829398097213,0,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0,0,0,0.145398238779565,0,0,0,0.411167888021826,0,0,0,0,0.689491361473237,0,0,0.188242339542605,0,0,0.918251677112708,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0.368277635987565,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0.10075209822764,0,0,0.272746120590835,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.183138929636687,0.247528499761764,0,0,0,0,0,0,0.275673144969061,0.107420244868274,0,0.170453254832202,0,0.165284915360978,0,1.40373983744043,0,0.464845549297286,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0.422250816255987,0.19924798825107,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61172493054636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.0801588202515337,0,0,0,0.458146384663663,0,0.14405479798815,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0,1.19271615249795,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0.122026264901963,0.1251909307065,0,0,0,0.138348634936231,0.249960815924213,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,1.42769420259154,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,1.09394961803644,0,0,0,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,1.82631744101899,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0,0,0.4226557275834,0.169927114687817,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0.0918948995348449,0,0,0.535928260312357,0,0,0.213233981900981,0.714193294391221,0,0,0.112131862580613,0.25458863311266,1.0105859447911,0,0,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0.244482888365733,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0.157421562627358,0,0.383829398097213,0,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0,0,0,0.145398238779565,0,0,0,0.411167888021826,0,0,0,0,0.689491361473237,0,0,0.188242339542605,0,0,0.918251677112708,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0.368277635987565,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0.10075209822764,0,0,0.272746120590835,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.183138929636687,0.247528499761764,0,0,0,0,0,0,0.275673144969061,0.107420244868274,0,0.170453254832202,0,0.165284915360978,0,1.40373983744043,0,0.464845549297286,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0.422250816255987,0.19924798825107,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01701460117107,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61172493054636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.0801588202515337,0,0,0,0.458146384663663,0,0.14405479798815,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0,1.19271615249795,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0.122026264901963,0.1251909307065,0,0,0,0.138348634936231,0.249960815924213,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,1.42769420259154,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,1.09394961803644,0,0,0,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,1.82631744101899,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0,0,0.4226557275834,0.169927114687817,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0.0918948995348449,0,0,0.535928260312357,0,0,0.213233981900981,0.714193294391221,0,0,0.112131862580613,0.25458863311266,1.0105859447911,0,0,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0.244482888365733,0.406896178315738,0,0,0 | ||
|short_description=p@chr2:227187108..227187109,- | |short_description=p@chr2:227187108..227187109,- | ||
}} | }} |
Latest revision as of 07:18, 29 July 2015
Short description: | p@chr2:227187108..227187109, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:227187108..227187109, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.67e-09 | 3 |
respiratory epithelial cell | 1.42e-08 | 13 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.58e-26 | 1 |
cranial nerve | 3.58e-26 | 1 |
nerve trunk | 3.58e-26 | 1 |
nerve connecting eye with brain | 3.58e-26 | 1 |
nerve | 3.58e-26 | 1 |
retinal neural layer | 3.58e-26 | 1 |
presumptive neural retina | 3.58e-26 | 1 |
neural tissue | 8.28e-14 | 2 |
multi cell component structure | 8.28e-14 | 2 |
neuron projection bundle | 8.28e-14 | 2 |
bronchoalveolar duct junction | 1.37e-13 | 2 |
alveolar duct | 1.37e-13 | 2 |
bronchiole | 1.37e-13 | 2 |
pulmonary alveolus epithelium | 1.67e-09 | 3 |
alveolus | 1.67e-09 | 3 |
pulmonary lobule | 1.67e-09 | 3 |
lobule | 1.67e-09 | 3 |
alveolus of lung | 1.67e-09 | 3 |
alveolar system | 1.67e-09 | 3 |
pulmonary acinus | 1.67e-09 | 3 |
alveolar sac | 1.67e-09 | 3 |
alveolar wall | 1.67e-09 | 3 |
rectum | 1.40e-07 | 4 |
layer of retina | 1.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 6.43e-14 | 2 |
lung adenocarcinoma | 1.37e-13 | 2 |