FFCP PHASE1:Hg19::chr1:158656491..158656511,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6708 | |EntrezGene=6708 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11272 | |HGNC=11272 | ||
|TSSclassifier=strong | |||
|UniProt=P02549 | |UniProt=P02549 | ||
|association_with_transcript=0bp_to_NM_003126,uc001fst.1_5end | |association_with_transcript=0bp_to_NM_003126,uc001fst.1_5end | ||
|cluster_id=chr1:158656491..158656511,- | |||
|coexpression_cluster_id=C33 | |||
|description=CAGE_peak_2_at_SPTA1_5end | |description=CAGE_peak_2_at_SPTA1_5end | ||
|id=chr1:158656491..158656511,- | |id=chr1:158656491..158656511,- | ||
|ontology_enrichment_celltype=CL:0002057!2.91e-21!42;CL:0000763!2.21e-20!112;CL:0000049!2.21e-20!112;CL:0000860!2.30e-19!45;CL:0000839!1.57e-14!70;CL:0002194!6.37e-14!63;CL:0000576!6.37e-14!63;CL:0000040!6.37e-14!63;CL:0000559!6.37e-14!63;CL:0002009!2.79e-13!65;CL:0000557!1.40e-11!71;CL:0002032!7.76e-11!165;CL:0000837!7.76e-11!165;CL:0000037!1.25e-10!172;CL:0000566!1.25e-10!172;CL:0000766!2.23e-10!76;CL:0000988!1.94e-09!182 | |ontology_enrichment_celltype=CL:0002057!2.91e-21!42;CL:0000763!2.21e-20!112;CL:0000049!2.21e-20!112;CL:0000860!2.30e-19!45;CL:0000839!1.57e-14!70;CL:0002194!6.37e-14!63;CL:0000576!6.37e-14!63;CL:0000040!6.37e-14!63;CL:0000559!6.37e-14!63;CL:0002009!2.79e-13!65;CL:0000557!1.40e-11!71;CL:0002032!7.76e-11!165;CL:0000837!7.76e-11!165;CL:0000037!1.25e-10!172;CL:0000566!1.25e-10!172;CL:0000766!2.23e-10!76;CL:0000988!1.94e-09!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.92e-19;33!CL:0002057;4.92e-19;33!CL:0000473;4.80e-12;39!CL:0000234;4.80e-12;39!CL:0000764;3.21e-10;2!CL:0000558;3.21e-10;2!CL:0000576;3.56e-09;48!CL:0000763;5.72e-09;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.09e-21,108;CL:0000049,1.09e-21,108;CL:0000860,9.15e-16,42;CL:0002057,9.15e-16,42;CL:0000473,2.08e-13,48;CL:0000234,2.08e-13,48;CL:0002032,1.73e-12,161;CL:0000837,1.73e-12,161;CL:0000839,5.38e-12,66;CL:0000037,1.04e-11,168;CL:0000988,8.41e-11,177;CL:0000764,3.21e-10,2;CL:0000765,3.21e-10,2;CL:0000050,3.21e-10,2;CL:0000038,3.21e-10,2;CL:0000558,3.21e-10,2;CL:0000547,3.21e-10,2;CL:0000549,3.21e-10,2;CL:0000550,3.21e-10,2;CL:0000552,3.21e-10,2;CL:0002194,4.01e-10,59;CL:0000576,4.01e-10,59;CL:0000040,4.01e-10,59;CL:0000559,4.01e-10,59;CL:0002009,1.06e-09,61;CL:0000557,1.38e-08,67;CL:0000766,8.39e-08,72 | |||
|ontology_enrichment_development_v019=CL:0002057;8.24e-12;42!CL:0000049;5.99e-08;108 | |||
|ontology_enrichment_disease=DOID:8692!2.19e-13!31;DOID:1240!5.35e-11!39;DOID:1036!5.21e-10!8;DOID:2531!2.23e-07!51;DOID:0060083!2.23e-07!51 | |ontology_enrichment_disease=DOID:8692!2.19e-13!31;DOID:1240!5.35e-11!39;DOID:1036!5.21e-10!8;DOID:2531!2.23e-07!51;DOID:0060083!2.23e-07!51 | ||
|ontology_enrichment_disease_v019=DOID:1036;2.26e-19;8!DOID:8692;1.35e-14;31!DOID:1240;4.34e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,2.26e-19,8;DOID:8692,7.79e-15,31;DOID:1240,2.59e-11,39;DOID:2531,4.05e-08,51;DOID:0060083,4.05e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.70e-17!102;UBERON:0003061!1.70e-17!102;UBERON:0002193!5.36e-15!112;UBERON:0002371!1.89e-10!80;UBERON:0002405!1.57e-09!115;UBERON:0001474!3.02e-09!86;UBERON:0004765!6.49e-07!101;UBERON:0001434!6.49e-07!101 | |ontology_enrichment_uberon=UBERON:0002390!1.70e-17!102;UBERON:0003061!1.70e-17!102;UBERON:0002193!5.36e-15!112;UBERON:0002371!1.89e-10!80;UBERON:0002405!1.57e-09!115;UBERON:0001474!3.02e-09!86;UBERON:0004765!6.49e-07!101;UBERON:0001434!6.49e-07!101 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.29e-12;15!UBERON:0000179;1.29e-12;15!UBERON:0000463;1.29e-12;15!UBERON:0000341;3.18e-09;2!UBERON:0002390;1.31e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.31e-16,98;UBERON:0003061,3.31e-16,98;UBERON:0002193,3.19e-14,108;UBERON:0000178,1.22e-12,15;UBERON:0000179,1.22e-12,15;UBERON:0000463,1.22e-12,15;UBERON:0000341,2.64e-09,2;UBERON:0002405,2.05e-07,93;UBERON:0002371,3.00e-07,76 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0.145398238779565,0.755751887377619,0,0,1.23350366406548,0.619412741790207,0.28769239232215,3.33008918487831,2.36482229888585,0,0,0,0.376484679085209,0.545812300115692,0.674170453335254,0.306083892370903,0.641858054152187,0,1.64925650093358,2.59302754908121,1.27867425159808,0.580418477257168,3.97169657283798,1.24564449799115,5.02497330513487,4.69334626578181,3.04064382587163,1.81619850790011,4.41933163185078,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,3.423993102076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,289.203777295988,209.409796270945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,5.07447609232169,0,2.27858874869665,5.47933083552915,2.87953591160336,2.59389324477087,4.32025149790492,1.58625035258854,0,0,0.245040215981032,0,0,0.142283686696828,0,0,0.191505370132367,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0.447352215784832,0.166849141711909,0.19538809540204,11.4146531297049,22.1557318105882,3.2454681417118,0,12.6888304579065,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.81467895790641,19.1756311524604,20.9786911719981,25.1732380463764,65.8445452552922,23.6815502680764,0,0,0,0,0,0,1.22206028986725,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,3.15762320687613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.524545881349981,0,0,0,0,0,0,0,0,0,0,1.31348033198942,0,0,0,17.2258955585888,0,0,0,0,0.533937062838473,8.33182817028229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0.467426619694449,0,0,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0.336749488765919,0,0,0.214441591374926,0,1.36023555307363,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,2.94927490504463,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.887023701626388,0,2.40083213212386,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.281951753939561,14.8897721218963,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18378547512845,1.66645102024618,0.0645889098360061,1.1794195716213,0,0.0636471582781649,0,0,0,0,0.0717222053926763,1.33064142618405,0,0,0,0,0,0,0,0.665756774185513,0,0 | |phase1_expression=0.363356758541113,0.428201047781966,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0.145398238779565,0.755751887377619,0,0,1.23350366406548,0.619412741790207,0.28769239232215,3.33008918487831,2.36482229888585,0,0,0,0.376484679085209,0.545812300115692,0.674170453335254,0.306083892370903,0.641858054152187,0,1.64925650093358,2.59302754908121,1.27867425159808,0.580418477257168,3.97169657283798,1.24564449799115,5.02497330513487,4.69334626578181,3.04064382587163,1.81619850790011,4.41933163185078,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,3.423993102076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,289.203777295988,209.409796270945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,5.07447609232169,0,2.27858874869665,5.47933083552915,2.87953591160336,2.59389324477087,4.32025149790492,1.58625035258854,0,0,0.245040215981032,0,0,0.142283686696828,0,0,0.191505370132367,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0.447352215784832,0.166849141711909,0.19538809540204,11.4146531297049,22.1557318105882,3.2454681417118,0,12.6888304579065,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.81467895790641,19.1756311524604,20.9786911719981,25.1732380463764,65.8445452552922,23.6815502680764,0,0,0,0,0,0,1.22206028986725,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,3.15762320687613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.524545881349981,0,0,0,0,0,0,0,0,0,0,1.31348033198942,0,0,0,17.2258955585888,0,0,0,0,0.533937062838473,8.33182817028229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0.467426619694449,0,0,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0.336749488765919,0,0,0.214441591374926,0,1.36023555307363,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,2.94927490504463,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.887023701626388,0,2.40083213212386,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.281951753939561,14.8897721218963,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18378547512845,1.66645102024618,0.0645889098360061,1.1794195716213,0,0.0636471582781649,0,0,0,0,0.0717222053926763,1.33064142618405,0,0,0,0,0,0,0,0.665756774185513,0,0 | ||
|short_description=p2@SPTA1 | |short_description=p2@SPTA1 | ||
}} | }} |
Latest revision as of 21:35, 17 September 2015
Short description: | p2@SPTA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SPTA1_5end |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | 0bp_to_NM_003126, uc001fst.1_5end |
EntrezGene: | SPTA1 |
HGNC: | 11272 |
UniProt: | P02549 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.09e-21 | 108 |
common myeloid progenitor | 1.09e-21 | 108 |
classical monocyte | 9.15e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.15e-16 | 42 |
defensive cell | 2.08e-13 | 48 |
phagocyte | 2.08e-13 | 48 |
hematopoietic oligopotent progenitor cell | 1.73e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.73e-12 | 161 |
myeloid lineage restricted progenitor cell | 5.38e-12 | 66 |
hematopoietic stem cell | 1.04e-11 | 168 |
hematopoietic cell | 8.41e-11 | 177 |
erythroid lineage cell | 3.21e-10 | 2 |
erythroblast | 3.21e-10 | 2 |
megakaryocyte-erythroid progenitor cell | 3.21e-10 | 2 |
erythroid progenitor cell | 3.21e-10 | 2 |
reticulocyte | 3.21e-10 | 2 |
proerythroblast | 3.21e-10 | 2 |
basophilic erythroblast | 3.21e-10 | 2 |
polychromatophilic erythroblast | 3.21e-10 | 2 |
orthochromatic erythroblast | 3.21e-10 | 2 |
monopoietic cell | 4.01e-10 | 59 |
monocyte | 4.01e-10 | 59 |
monoblast | 4.01e-10 | 59 |
promonocyte | 4.01e-10 | 59 |
macrophage dendritic cell progenitor | 1.06e-09 | 61 |
granulocyte monocyte progenitor cell | 1.38e-08 | 67 |
myeloid leukocyte | 8.39e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.31e-16 | 98 |
blood island | 3.31e-16 | 98 |
hemolymphoid system | 3.19e-14 | 108 |
blood | 1.22e-12 | 15 |
haemolymphatic fluid | 1.22e-12 | 15 |
organism substance | 1.22e-12 | 15 |
throat | 2.64e-09 | 2 |
immune system | 2.05e-07 | 93 |
bone marrow | 3.00e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 2.26e-19 | 8 |
myeloid leukemia | 7.79e-15 | 31 |
leukemia | 2.59e-11 | 39 |
hematologic cancer | 4.05e-08 | 51 |
immune system cancer | 4.05e-08 | 51 |