FFCP PHASE1:Hg19::chr1:160549325..160549334,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8832 | |EntrezGene=8832 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1704 | |HGNC=1704 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UIB8 | |UniProt=Q9UIB8 | ||
|association_with_transcript=-19bp_to_ENST00000534968,NM_001184879,NM_001184881,NM_001184882,NM_003874_5end | |association_with_transcript=-19bp_to_ENST00000534968,NM_001184879,NM_001184881,NM_001184882,NM_003874_5end | ||
|cluster_id=chr1:160549325..160549334,- | |||
|description=CAGE_peak_2_at_CD84_5end | |description=CAGE_peak_2_at_CD84_5end | ||
|id=chr1:160549325..160549334,- | |id=chr1:160549325..160549334,- | ||
|ontology_enrichment_celltype=CL:0000738!2.03e-45!140;CL:0000037!1.31e-44!172;CL:0000566!1.31e-44!172;CL:0002032!4.71e-43!165;CL:0000837!4.71e-43!165;CL:0000988!1.08e-40!182;CL:0002031!1.01e-39!124;CL:0002087!3.63e-37!119;CL:0000542!8.42e-22!53;CL:0000051!8.42e-22!53;CL:0000791!1.54e-21!18;CL:0000789!1.54e-21!18;CL:0002420!1.54e-21!18;CL:0002419!1.54e-21!18;CL:0000790!1.54e-21!18;CL:0000838!5.14e-21!52;CL:0000763!9.79e-21!112;CL:0000049!9.79e-21!112;CL:0000084!9.06e-20!25;CL:0000827!9.06e-20!25;CL:0000766!2.09e-19!76;CL:0000839!7.13e-18!70;CL:0000557!1.31e-17!71;CL:0000625!2.03e-17!11;CL:0002009!2.36e-13!65;CL:0002194!6.63e-13!63;CL:0000576!6.63e-13!63;CL:0000040!6.63e-13!63;CL:0000559!6.63e-13!63;CL:0000134!1.07e-09!358;CL:0002320!4.26e-09!365;CL:0002274!5.52e-09!5;CL:0000457!5.52e-09!5;CL:0002191!5.52e-09!5;CL:0000097!5.52e-09!5;CL:0000831!5.52e-09!5;CL:0002028!5.52e-09!5;CL:0000624!1.73e-07!6;CL:0000219!4.81e-07!390;CL:0002057!7.12e-07!42 | |ontology_enrichment_celltype=CL:0000738!2.03e-45!140;CL:0000037!1.31e-44!172;CL:0000566!1.31e-44!172;CL:0002032!4.71e-43!165;CL:0000837!4.71e-43!165;CL:0000988!1.08e-40!182;CL:0002031!1.01e-39!124;CL:0002087!3.63e-37!119;CL:0000542!8.42e-22!53;CL:0000051!8.42e-22!53;CL:0000791!1.54e-21!18;CL:0000789!1.54e-21!18;CL:0002420!1.54e-21!18;CL:0002419!1.54e-21!18;CL:0000790!1.54e-21!18;CL:0000838!5.14e-21!52;CL:0000763!9.79e-21!112;CL:0000049!9.79e-21!112;CL:0000084!9.06e-20!25;CL:0000827!9.06e-20!25;CL:0000766!2.09e-19!76;CL:0000839!7.13e-18!70;CL:0000557!1.31e-17!71;CL:0000625!2.03e-17!11;CL:0002009!2.36e-13!65;CL:0002194!6.63e-13!63;CL:0000576!6.63e-13!63;CL:0000040!6.63e-13!63;CL:0000559!6.63e-13!63;CL:0000134!1.07e-09!358;CL:0002320!4.26e-09!365;CL:0002274!5.52e-09!5;CL:0000457!5.52e-09!5;CL:0002191!5.52e-09!5;CL:0000097!5.52e-09!5;CL:0000831!5.52e-09!5;CL:0002028!5.52e-09!5;CL:0000624!1.73e-07!6;CL:0000219!4.81e-07!390;CL:0002057!7.12e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000791;7.21e-40;18!CL:0000789;7.21e-40;18!CL:0002419;7.21e-40;18!CL:0000084;8.96e-32;25!CL:0000625;1.53e-27;11!CL:0000097;4.82e-19;5!CL:0000624;1.84e-16;6!CL:0000235;3.95e-15;6!CL:0000163;1.89e-10;9!CL:0000542;1.22e-09;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.40e-40,18;CL:0000789,4.40e-40,18;CL:0002420,4.40e-40,18;CL:0002419,4.40e-40,18;CL:0000790,4.40e-40,18;CL:0000084,7.64e-32,25;CL:0000827,7.64e-32,25;CL:0000625,8.81e-28,11;CL:0000738,2.55e-22,136;CL:0002031,5.41e-21,120;CL:0000097,2.14e-19,5;CL:0002028,2.14e-19,5;CL:0000037,7.83e-18,168;CL:0000838,1.76e-17,52;CL:0002087,3.52e-17,115;CL:0000542,4.52e-17,53;CL:0000051,4.52e-17,53;CL:0000988,1.61e-16,177;CL:0000624,1.91e-16,6;CL:0002032,3.00e-16,161;CL:0000837,3.00e-16,161;CL:0000235,3.46e-15,6;CL:0000163,1.22e-10,9;CL:0000766,6.80e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000790;7.21e-40;18!CL:0000051;1.22e-09;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.08e-24!102;UBERON:0003061!1.08e-24!102;UBERON:0002193!1.53e-23!112;UBERON:0002371!2.03e-14!80;UBERON:0002405!7.60e-13!115;UBERON:0001474!1.10e-12!86;UBERON:0004765!2.49e-09!101;UBERON:0001434!2.49e-09!101;UBERON:0000178!5.43e-09!15;UBERON:0000179!5.43e-09!15;UBERON:0000463!5.43e-09!15;UBERON:0002384!2.73e-08!375 | |ontology_enrichment_uberon=UBERON:0002390!1.08e-24!102;UBERON:0003061!1.08e-24!102;UBERON:0002193!1.53e-23!112;UBERON:0002371!2.03e-14!80;UBERON:0002405!7.60e-13!115;UBERON:0001474!1.10e-12!86;UBERON:0004765!2.49e-09!101;UBERON:0001434!2.49e-09!101;UBERON:0000178!5.43e-09!15;UBERON:0000179!5.43e-09!15;UBERON:0000463!5.43e-09!15;UBERON:0002384!2.73e-08!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.57e-08;15!UBERON:0000179;1.57e-08;15!UBERON:0000463;1.57e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.88e-12,108;UBERON:0002390,1.57e-11,98;UBERON:0003061,1.57e-11,98;UBERON:0000178,1.47e-08,15;UBERON:0000179,1.47e-08,15;UBERON:0000463,1.47e-08,15;UBERON:0002405,1.83e-07,93 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.246301768349837,0.157421562627358,0.786728553697808,2.30297638858328,0.464448369948228,0,0,0,0.309868802321207,0.284338464974843,0,0.553995408531877,0.802177789880567,0.217010870715852,0.895661896959697,2.59114932815184,1.54545340580512,0.290796477559129,0.377875943688809,0,0,0.411167888021826,0,0.28769239232215,0.512321413058201,0.47296445977717,1.03423704220986,0.645484683583826,0,0,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0.329851300186716,0.598390972864896,0,0.290209238628584,0,0,0.502497330513487,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.73748563216283,3.14408610199332,1.64481199199607,0.501559486172034,0,0.473447805734733,0,4.45641827540694,3.24066498222321,3.1014745241707,3.24964636518019,2.0494611156108,3.64166173167659,0.986627427622057,1.65810010671509,0.579606171470105,1.03800594213442,1.07016331235885,0,2.49280553934646,5.74830740402882,3.77990190030893,3.54227568827304,3.50421955756506,2.60433381542567,2.85135613334512,0.451725357233318,0.895906278080929,2.49861453104692,3.78843603270427,6.56902397536837,4.63695509416885,1.87208137048455,3.47578569318718,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0.97364218096405,0.696518949197069,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47730203652438,1.8720341211139,1.63494278517601,0,0,0,0,0,0,4.92663237895944,1.84901711427775,2.90259361757081,1.58531948758658,3.91351543621778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,2.75843064282698,0.431255149719035,1.15508732651774,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,0.862856803274467,1.921096040462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,2.38231775457789,2.05681136543097,1.29694662238543,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0.478278818186467,0.199579371432817,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0.246169610922139,0,0,0,0,0.197286811273867,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,1.02193298195737,0.941881538370149,0.166211681900156,0,0,0.167821586975843,0,1.11255605286265,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0.364909578431332,0,0,0.394584402849391,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899895566206002,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,0.146552233678082,0,0,0,0,0,0.640724475406168,0,0,1.9846640872478,0,0.243585196761792,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0.163565394255844,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0.469919589899268,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0980114672121,0.434523000071005,0,0.12729431655633,0,0.217716747896961,0,1.6164492723501,0.143444410785353,0,0,0,0,0,0,0,0,0,1.00636896795513,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.246301768349837,0.157421562627358,0.786728553697808,2.30297638858328,0.464448369948228,0,0,0,0.309868802321207,0.284338464974843,0,0.553995408531877,0.802177789880567,0.217010870715852,0.895661896959697,2.59114932815184,1.54545340580512,0.290796477559129,0.377875943688809,0,0,0.411167888021826,0,0.28769239232215,0.512321413058201,0.47296445977717,1.03423704220986,0.645484683583826,0,0,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0.329851300186716,0.598390972864896,0,0.290209238628584,0,0,0.502497330513487,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.73748563216283,3.14408610199332,1.64481199199607,0.501559486172034,0,0.473447805734733,0,4.45641827540694,3.24066498222321,3.1014745241707,3.24964636518019,2.0494611156108,3.64166173167659,0.986627427622057,1.65810010671509,0.579606171470105,1.03800594213442,1.07016331235885,0,2.49280553934646,5.74830740402882,3.77990190030893,3.54227568827304,3.50421955756506,2.60433381542567,2.85135613334512,0.451725357233318,0.895906278080929,2.49861453104692,3.78843603270427,6.56902397536837,4.63695509416885,1.87208137048455,3.47578569318718,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0.97364218096405,0.696518949197069,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47730203652438,1.8720341211139,1.63494278517601,0,0,0,0,0,0,4.92663237895944,1.84901711427775,2.90259361757081,1.58531948758658,3.91351543621778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,2.75843064282698,0.431255149719035,1.15508732651774,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,0.862856803274467,1.921096040462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,2.38231775457789,2.05681136543097,1.29694662238543,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0.478278818186467,0.199579371432817,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0.246169610922139,0,0,0,0,0.197286811273867,4.7896618469388,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,1.02193298195737,0.941881538370149,0.166211681900156,0,0,0.167821586975843,0,1.11255605286265,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0.364909578431332,0,0,0.394584402849391,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899895566206002,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,0.146552233678082,0,0,0,0,0,0.640724475406168,0,0,1.9846640872478,0,0.243585196761792,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0.163565394255844,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0.469919589899268,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0980114672121,0.434523000071005,0,0.12729431655633,0,0.217716747896961,0,1.6164492723501,0.143444410785353,0,0,0,0,0,0,0,0,0,1.00636896795513,0 | ||
|short_description=p2@CD84 | |short_description=p2@CD84 | ||
}} | }} |
Latest revision as of 02:34, 18 September 2015
Short description: | p2@CD84 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CD84_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000534968, NM_001184879, NM_001184881, NM_001184882, NM_003874_5end |
EntrezGene: | CD84 |
HGNC: | 1704 |
UniProt: | Q9UIB8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.40e-40 | 18 |
alpha-beta T cell | 4.40e-40 | 18 |
immature T cell | 4.40e-40 | 18 |
mature T cell | 4.40e-40 | 18 |
immature alpha-beta T cell | 4.40e-40 | 18 |
T cell | 7.64e-32 | 25 |
pro-T cell | 7.64e-32 | 25 |
CD8-positive, alpha-beta T cell | 8.81e-28 | 11 |
leukocyte | 2.55e-22 | 136 |
hematopoietic lineage restricted progenitor cell | 5.41e-21 | 120 |
mast cell | 2.14e-19 | 5 |
basophil mast progenitor cell | 2.14e-19 | 5 |
hematopoietic stem cell | 7.83e-18 | 168 |
lymphoid lineage restricted progenitor cell | 1.76e-17 | 52 |
nongranular leukocyte | 3.52e-17 | 115 |
lymphocyte | 4.52e-17 | 53 |
common lymphoid progenitor | 4.52e-17 | 53 |
hematopoietic cell | 1.61e-16 | 177 |
CD4-positive, alpha-beta T cell | 1.91e-16 | 6 |
hematopoietic oligopotent progenitor cell | 3.00e-16 | 161 |
hematopoietic multipotent progenitor cell | 3.00e-16 | 161 |
macrophage | 3.46e-15 | 6 |
endocrine cell | 1.22e-10 | 9 |
myeloid leukocyte | 6.80e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.88e-12 | 108 |
hematopoietic system | 1.57e-11 | 98 |
blood island | 1.57e-11 | 98 |
blood | 1.47e-08 | 15 |
haemolymphatic fluid | 1.47e-08 | 15 |
organism substance | 1.47e-08 | 15 |
immune system | 1.83e-07 | 93 |