FFCP PHASE1:Hg19::chr16:28996114..28996166,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27040 | |EntrezGene=27040 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18874 | |HGNC=18874 | ||
|TSSclassifier=strong | |||
|UniProt=B7WPI0,O43561 | |UniProt=B7WPI0,O43561 | ||
|association_with_transcript=0bp_to_ENST00000395461,NM_001014989,uc010vdj.1_5end | |association_with_transcript=0bp_to_ENST00000395461,NM_001014989,uc010vdj.1_5end | ||
|cluster_id=chr16:28996114..28996166,+ | |||
|description=CAGE_peak_7_at_LAT_5end | |description=CAGE_peak_7_at_LAT_5end | ||
|id=chr16:28996114..28996166,+ | |id=chr16:28996114..28996166,+ | ||
|ontology_enrichment_celltype=CL:0000839!1.13e-41!70;CL:0000766!1.21e-41!76;CL:0000557!8.09e-41!71;CL:0000763!3.67e-40!112;CL:0000049!3.67e-40!112;CL:0002032!6.33e-38!165;CL:0000837!6.33e-38!165;CL:0002194!3.17e-37!63;CL:0000576!3.17e-37!63;CL:0000040!3.17e-37!63;CL:0000559!3.17e-37!63;CL:0000988!5.39e-37!182;CL:0000037!3.72e-36!172;CL:0000566!3.72e-36!172;CL:0002009!1.48e-35!65;CL:0002031!2.26e-34!124;CL:0000738!7.42e-32!140;CL:0002057!3.29e-31!42;CL:0002087!2.15e-30!119;CL:0000860!2.92e-28!45;CL:0000219!9.63e-12!390;CL:0000134!1.63e-10!358;CL:0002320!8.11e-10!365;CL:0002274!3.27e-08!5;CL:0000457!3.27e-08!5;CL:0002191!3.27e-08!5;CL:0000097!3.27e-08!5;CL:0000831!3.27e-08!5;CL:0002028!3.27e-08!5 | |ontology_enrichment_celltype=CL:0000839!1.13e-41!70;CL:0000766!1.21e-41!76;CL:0000557!8.09e-41!71;CL:0000763!3.67e-40!112;CL:0000049!3.67e-40!112;CL:0002032!6.33e-38!165;CL:0000837!6.33e-38!165;CL:0002194!3.17e-37!63;CL:0000576!3.17e-37!63;CL:0000040!3.17e-37!63;CL:0000559!3.17e-37!63;CL:0000988!5.39e-37!182;CL:0000037!3.72e-36!172;CL:0000566!3.72e-36!172;CL:0002009!1.48e-35!65;CL:0002031!2.26e-34!124;CL:0000738!7.42e-32!140;CL:0002057!3.29e-31!42;CL:0002087!2.15e-30!119;CL:0000860!2.92e-28!45;CL:0000219!9.63e-12!390;CL:0000134!1.63e-10!358;CL:0002320!8.11e-10!365;CL:0002274!3.27e-08!5;CL:0000457!3.27e-08!5;CL:0002191!3.27e-08!5;CL:0000097!3.27e-08!5;CL:0000831!3.27e-08!5;CL:0002028!3.27e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.80e-31;39!CL:0000234;1.80e-31;39!CL:0000860;3.11e-31;33!CL:0002057;3.11e-31;33!CL:0000766;1.67e-17;69!CL:0000097;1.82e-15;5!CL:0000576;2.14e-14;48!CL:0000763;2.14e-13;100!CL:0000163;2.21e-08;9!CL:0000235;2.61e-08;6!CL:0000738;2.68e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,1.46e-39,66;CL:0000557,7.72e-39,67;CL:0000766,1.59e-35,72;CL:0000473,3.87e-35,48;CL:0000234,3.87e-35,48;CL:0000763,1.93e-34,108;CL:0000049,1.93e-34,108;CL:0002194,4.42e-31,59;CL:0000576,4.42e-31,59;CL:0000040,4.42e-31,59;CL:0000559,4.42e-31,59;CL:0002009,8.10e-30,61;CL:0000860,1.48e-28,42;CL:0002057,1.48e-28,42;CL:0002032,2.02e-23,161;CL:0000837,2.02e-23,161;CL:0000037,5.73e-22,168;CL:0002031,5.99e-22,120;CL:0000988,2.08e-21,177;CL:0000738,3.04e-18,136;CL:0002087,6.87e-16,115;CL:0000097,2.12e-15,5;CL:0002028,2.12e-15,5;CL:0000219,1.40e-08,386;CL:0000163,2.39e-08,9;CL:0000235,2.93e-08,6;CL:0000134,7.78e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.76e-21;42!CL:0000049;8.45e-10;108 | |||
|ontology_enrichment_disease=DOID:1240!2.01e-09!39;DOID:2531!2.30e-07!51;DOID:0060083!2.30e-07!51;DOID:8692!2.63e-07!31 | |ontology_enrichment_disease=DOID:1240!2.01e-09!39;DOID:2531!2.30e-07!51;DOID:0060083!2.30e-07!51;DOID:8692!2.63e-07!31 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.15e-47!102;UBERON:0003061!3.15e-47!102;UBERON:0002193!1.33e-43!112;UBERON:0001474!1.01e-34!86;UBERON:0002371!4.26e-34!80;UBERON:0004765!1.09e-26!101;UBERON:0001434!1.09e-26!101;UBERON:0002405!1.64e-24!115;UBERON:0003081!4.17e-14!216;UBERON:0000178!4.40e-12!15;UBERON:0000179!4.40e-12!15;UBERON:0000463!4.40e-12!15;UBERON:0002384!2.90e-10!375;UBERON:0002204!2.20e-09!167 | |ontology_enrichment_uberon=UBERON:0002390!3.15e-47!102;UBERON:0003061!3.15e-47!102;UBERON:0002193!1.33e-43!112;UBERON:0001474!1.01e-34!86;UBERON:0002371!4.26e-34!80;UBERON:0004765!1.09e-26!101;UBERON:0001434!1.09e-26!101;UBERON:0002405!1.64e-24!115;UBERON:0003081!4.17e-14!216;UBERON:0000178!4.40e-12!15;UBERON:0000179!4.40e-12!15;UBERON:0000463!4.40e-12!15;UBERON:0002384!2.90e-10!375;UBERON:0002204!2.20e-09!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.82e-08;15!UBERON:0000179;3.82e-08;15!UBERON:0000463;3.82e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.49e-37,98;UBERON:0003061,5.49e-37,98;UBERON:0002371,3.46e-33,76;UBERON:0002193,1.42e-32,108;UBERON:0001474,3.06e-32,82;UBERON:0004765,1.48e-28,90;UBERON:0002405,1.73e-25,93;UBERON:0001434,8.81e-25,100;UBERON:0003081,2.78e-13,203;UBERON:0002204,2.86e-11,167;UBERON:0000178,4.09e-08,15;UBERON:0000179,4.09e-08,15;UBERON:0000463,4.09e-08,15 | |||
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|short_description=p7@LAT | |short_description=p7@LAT | ||
}} | }} |
Latest revision as of 01:57, 16 September 2015
Short description: | p7@LAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LAT_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000395461, NM_001014989, uc010vdj.1_5end |
EntrezGene: | LAT |
HGNC: | 18874 |
UniProt: | B7WPI0O43561 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 1.46e-39 | 66 |
granulocyte monocyte progenitor cell | 7.72e-39 | 67 |
myeloid leukocyte | 1.59e-35 | 72 |
defensive cell | 3.87e-35 | 48 |
phagocyte | 3.87e-35 | 48 |
myeloid cell | 1.93e-34 | 108 |
common myeloid progenitor | 1.93e-34 | 108 |
monopoietic cell | 4.42e-31 | 59 |
monocyte | 4.42e-31 | 59 |
monoblast | 4.42e-31 | 59 |
promonocyte | 4.42e-31 | 59 |
macrophage dendritic cell progenitor | 8.10e-30 | 61 |
classical monocyte | 1.48e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.48e-28 | 42 |
hematopoietic oligopotent progenitor cell | 2.02e-23 | 161 |
hematopoietic multipotent progenitor cell | 2.02e-23 | 161 |
hematopoietic stem cell | 5.73e-22 | 168 |
hematopoietic lineage restricted progenitor cell | 5.99e-22 | 120 |
hematopoietic cell | 2.08e-21 | 177 |
leukocyte | 3.04e-18 | 136 |
nongranular leukocyte | 6.87e-16 | 115 |
mast cell | 2.12e-15 | 5 |
basophil mast progenitor cell | 2.12e-15 | 5 |
motile cell | 1.40e-08 | 386 |
endocrine cell | 2.39e-08 | 9 |
macrophage | 2.93e-08 | 6 |
mesenchymal cell | 7.78e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.49e-37 | 98 |
blood island | 5.49e-37 | 98 |
bone marrow | 3.46e-33 | 76 |
hemolymphoid system | 1.42e-32 | 108 |
bone element | 3.06e-32 | 82 |
skeletal element | 1.48e-28 | 90 |
immune system | 1.73e-25 | 93 |
skeletal system | 8.81e-25 | 100 |
lateral plate mesoderm | 2.78e-13 | 203 |
musculoskeletal system | 2.86e-11 | 167 |
blood | 4.09e-08 | 15 |
haemolymphatic fluid | 4.09e-08 | 15 |
organism substance | 4.09e-08 | 15 |