FFCP PHASE1:Hg19::chr17:48269863..48269900,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:48269863..48269900,-
|short_description=p45@COL1A1
|description=CAGE_peak_45_at_COL1A1_5end
|association_with_transcript=-63bp_to_ENST00000504289_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-63bp_to_ENST00000504289_5end | |||
|cluster_id=chr17:48269863..48269900,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_45_at_COL1A1_5end | |||
|id=chr17:48269863..48269900,- | |||
|ontology_enrichment_celltype=CL:0000055!2.26e-36!180;CL:0000057!8.16e-23!75;CL:0000183!9.04e-17!59;CL:0000680!2.05e-16!57;CL:0000056!2.05e-16!57;CL:0000355!2.05e-16!57;CL:0000187!1.54e-15!54;CL:0000048!1.93e-13!430;CL:0000723!8.98e-13!436;CL:0000393!2.27e-12!60;CL:0000211!2.27e-12!60;CL:0000192!4.78e-12!42;CL:0000514!4.78e-12!42;CL:0000034!7.58e-12!444;CL:0002371!9.02e-10!591;CL:0000144!1.62e-09!625;CL:0000499!1.83e-08!27;CL:0002494!5.47e-08!16;CL:0000327!5.94e-08!14;CL:0002334!6.06e-08!12;CL:0000359!1.16e-07!32;CL:0000222!1.98e-07!119;CL:0002620!3.89e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.22e-12;55!CL:0000048;1.49e-10;58!CL:0000723;6.07e-10;61!CL:0002320;3.93e-09;188!CL:0000057;5.14e-09;73!CL:0000499;1.15e-08;28!CL:0000327;2.64e-08;15!CL:0002620;3.22e-08;23!CL:0000034;1.81e-07;69!CL:0002334;5.28e-07;12!CL:0002570;6.78e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.09e-21,76;CL:0000048,1.00e-16,427;CL:0000723,5.96e-16,433;CL:0000034,5.86e-15,441;CL:0002320,1.30e-11,361;CL:0000134,3.43e-10,354;CL:0000499,8.10e-09,28;CL:0000219,1.81e-08,386;CL:0000327,1.93e-08,15;CL:0000680,2.15e-08,58;CL:0000056,2.15e-08,58;CL:0000355,2.15e-08,58;CL:0002620,5.82e-08,23;CL:0000187,7.33e-08,55;CL:0000192,3.32e-07,43;CL:0000514,3.32e-07,43;CL:0002334,4.96e-07,12;CL:0002570,5.41e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.68e-18!83;UBERON:0002329!5.68e-18!83;UBERON:0003077!5.68e-18!83;UBERON:0003059!5.68e-18!83;UBERON:0007282!5.68e-18!83;UBERON:0009618!5.68e-18!83;UBERON:0007285!5.68e-18!83;UBERON:0004290!8.77e-17!70;UBERON:0001134!1.14e-16!61;UBERON:0002036!1.14e-16!61;UBERON:0003082!1.14e-16!61;UBERON:0002385!1.49e-15!63;UBERON:0001015!1.49e-15!63;UBERON:0000383!1.49e-15!63;UBERON:0000486!2.66e-15!82;UBERON:0005256!2.28e-10!143;UBERON:0000948!3.51e-08!24;UBERON:0005498!3.51e-08!24;UBERON:0004140!3.51e-08!24;UBERON:0009881!3.51e-08!24;UBERON:0004141!3.51e-08!24;UBERON:0003084!3.51e-08!24;UBERON:0007005!3.51e-08!24;UBERON:0004139!3.51e-08!24;UBERON:0004291!3.51e-08!24;UBERON:0002100!4.76e-08!216;UBERON:0001013!2.85e-07!14;UBERON:0007100!3.46e-07!27;UBERON:0002199!4.97e-07!45;UBERON:0002416!4.97e-07!45;UBERON:0002384!5.55e-07!375;UBERON:0000475!7.75e-07!365;UBERON:0004872!7.97e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.60e-09;198!UBERON:0003688;2.57e-08;6!UBERON:0002358;2.57e-08;6!UBERON:0003684;2.57e-08;6!UBERON:0001178;2.57e-08;6!UBERON:0004457;4.58e-08;9!UBERON:0000042;4.58e-08;9!UBERON:0001013;7.87e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,5.51e-12,371;UBERON:0007524,1.03e-09,73;UBERON:0002329,2.47e-09,71;UBERON:0003059,2.47e-09,71;UBERON:0007282,2.47e-09,71;UBERON:0004290,2.47e-09,71;UBERON:0009618,2.47e-09,71;UBERON:0001134,3.69e-09,62;UBERON:0002036,3.69e-09,62;UBERON:0003082,3.69e-09,62;UBERON:0003077,4.54e-09,72;UBERON:0007285,4.54e-09,72;UBERON:0002385,1.35e-08,64;UBERON:0001015,1.35e-08,64;UBERON:0000383,1.35e-08,64;UBERON:0007503,3.01e-08,78;UBERON:0003688,3.05e-08,6;UBERON:0002358,3.05e-08,6;UBERON:0003684,3.05e-08,6;UBERON:0001178,3.05e-08,6;UBERON:0000486,9.14e-08,83;UBERON:0001013,6.85e-07,14;UBERON:0002097,9.90e-07,41 | |||
|phase1_expression=5.4503513781167,5.35251309727458,7.47058341708647,4.00293193412522,12.5149106439641,5.23403114460221,2.53299878168311,0,0.261185628199839,0.245733936501509,0,1.09220686065086,2.63766978228454,1.23766352960047,0.994192127183747,1.34465029290355,0.602694528023977,1.46062018077475,0.487932798790507,1.72369481307503,1.42800483870977,5.32873026512749,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,2.68280343881454,0.895037932904712,2.89151321907653,3.50936537445123,2.89693037921647,3.1811437882044,12.1658717575659,0.378139268656271,1.77383517970051,1.22968699970376,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.8607097779847,2.91250176828533,1.32409180813219,7.17091551872034,2.12801029319014,2.24271040056923,3.20246987189115,5.92002116201184,0.622422070799533,0.67355336034844,0.326923806226917,3.32986340818849,1.15235184896,0,0,0,0.298897361103602,0,1.13311061057692,0.280901613404497,0.408308342509787,0.61417158655884,0.619954687054593,11.8800285728205,8.90160945402805,7.28129089550421,6.46756327634615,0.336672227908132,1.00094815897571,0,0.877955241761676,2.14541457059314,4.20666564938471,0.794025282120147,3.40840307808838,4.05759038755278,5.72216133130817,4.20127534518163,2.26715564324566,4.12224864073007,2.79175284497385,5.90717162844432,2.14361411354637,2.01947019395292,4.41839513483037,3.23292113637624,5.32514388774922,1.0075209822764,1.01736355386293,0,0.272746120590835,0,0,0,0,0.207322110030741,0,0,1.56449532329816,1.92972281457866,1.38134921352481,0.928735856063958,2.88751792667834,0,0,0,0,0,0,0.134831308160164,0,0,0,0,6.173610169971,8.82052268313252,0,0,0.590789906681404,0,0,0.514703430895577,0.109750285408626,0,0,0,0.325808305310325,2.07986957055916,0,0.115930404975077,1.40890433082986,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784917590417525,2.61576041299968,1.10007428731425,2.84397774667111,10.7296933755565,4.22651376278,2.6593811658487,1.04007436911366,0.514414748524284,2.83698264046557,2.1313774321288,6.0050757336422,10.8524321078289,0.823240336780769,0.977208552881205,2.84313558994037,1.58390374586686,0.301439377059586,0.871533458600294,0.299918973546171,0,0,0,4.31324739884849,8.04033550838797,0,1.01346914667305,2.67119219315498,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,3.50119364741774,1.08506009479894,35.1470755987064,27.8349222523572,22.2360405197848,5.97421216462837,3.00946099727719,4.5481500811197,5.17365356462525,2.65690239414175,2.21243002250044,0.695068915744663,2.54541504701563,6.86286847621712,0,0,0,0,0,3.93107381328584,10.9167435440262,5.83155498494637,14.0330047216537,11.9169408807802,6.14048698880044,13.6725832972066,4.45254199334973,0.308419387605311,0.887808626565635,1.47828880824856,0.519254429183621,1.16210378459959,0.120859449591622,0,0,2.64073230778596,1.45672934405374,3.14698595902618,0,0,0,0,0,0,0,0.647747748306418,0,0.812839312631559,2.00675909541941,0,0,0.447749509444357,0,0,0,0,0.325378394664303,0,0.640986253728404,0.742585499285292,0.574265537996172,0.650060246036521,6.42735719376638,0.676695028044854,0.616194468458578,2.6095624703442,0.964856007391714,0.322260734604821,2.17525040871343,0.426133137080504,6.32127453091835,0.165284915360978,0,0,0.10115778085555,0.929691098594572,5.03699754929024,0,0.924100740528266,0.532306030317022,0,0.37064843820784,0.143124886741991,0,1.89827654831236,4.5751246541718,2.55897791311334,0.855877976067841,1.27281299170375,0,1.2591072030832,3.29444435683266,3.06312246098785,0.404364963146632,4.75530963519025,1.26377536871694,2.92580243453754,0.243713489631284,0,0.9554993798559,5.65621727814851,6.78048699721457,3.30819206127675,1.32687795048244,0.438450885253763,3.47265320560013,5.24715801637306,1.01455188481352,0.92947049429925,2.81695602532241,1.00387946542836,2.55447506634115,2.1400263088875,0.354761064070598,1.68886108238131,2.30506425071931,0.379473173765715,1.39973888097993,0,0.670302275535787,0,0.0941438007767792,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,8.3980688668688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23120413606075,0.113942055847001,0,0,0,0,2.1983422416447,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0.611030144933625,0,0,0,0,12.0386647094818,0,0,0,0,0,1.20990716048664,0.30607276163049,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.0969890164884194,0.176512253383001,4.51961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0083580899397,0,0.837847203816763,0.229160424011684,0,0.399358000997982,0,0,0.604651252380536,6.84569778730567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.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| ||
|short_description=p45@COL1A1 | |||
}} | }} |
Latest revision as of 00:38, 16 September 2015
Short description: | p45@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_45_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -63bp_to_ENST00000504289_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.09e-21 | 76 |
multi fate stem cell | 1.00e-16 | 427 |
somatic stem cell | 5.96e-16 | 433 |
stem cell | 5.86e-15 | 441 |
connective tissue cell | 1.30e-11 | 361 |
mesenchymal cell | 3.43e-10 | 354 |
stromal cell | 8.10e-09 | 28 |
motile cell | 1.81e-08 | 386 |
extracellular matrix secreting cell | 1.93e-08 | 15 |
muscle precursor cell | 2.15e-08 | 58 |
myoblast | 2.15e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.15e-08 | 58 |
skin fibroblast | 5.82e-08 | 23 |
muscle cell | 7.33e-08 | 55 |
smooth muscle cell | 3.32e-07 | 43 |
smooth muscle myoblast | 3.32e-07 | 43 |
preadipocyte | 4.96e-07 | 12 |
mesenchymal stem cell of adipose | 5.41e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 5.51e-12 | 371 |
dense mesenchyme tissue | 1.03e-09 | 73 |
somite | 2.47e-09 | 71 |
presomitic mesoderm | 2.47e-09 | 71 |
presumptive segmental plate | 2.47e-09 | 71 |
dermomyotome | 2.47e-09 | 71 |
trunk paraxial mesoderm | 2.47e-09 | 71 |
skeletal muscle tissue | 3.69e-09 | 62 |
striated muscle tissue | 3.69e-09 | 62 |
myotome | 3.69e-09 | 62 |
paraxial mesoderm | 4.54e-09 | 72 |
presumptive paraxial mesoderm | 4.54e-09 | 72 |
muscle tissue | 1.35e-08 | 64 |
musculature | 1.35e-08 | 64 |
musculature of body | 1.35e-08 | 64 |
epithelial vesicle | 3.01e-08 | 78 |
omentum | 3.05e-08 | 6 |
peritoneum | 3.05e-08 | 6 |
abdominal cavity | 3.05e-08 | 6 |
visceral peritoneum | 3.05e-08 | 6 |
multilaminar epithelium | 9.14e-08 | 83 |
adipose tissue | 6.85e-07 | 14 |
skin of body | 9.90e-07 | 41 |