FFCP PHASE1:Hg19::chr17:62207487..62207511,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:62207487..62207511,-
|short_description=p1@ERN1
|description=CAGE_peak_1_at_ERN1_5end
|association_with_transcript=0bp_to_ENST00000433197,NM_001433,uc002j...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2081 | |EntrezGene=2081 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3449 | |HGNC=3449 | ||
|TSSclassifier=strong | |||
|UniProt=O75460 | |UniProt=O75460 | ||
|association_with_transcript=0bp_to_ENST00000433197,NM_001433,uc002jdz.2_5end | |||
|cluster_id=chr17:62207487..62207511,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_ERN1_5end | |||
|id=chr17:62207487..62207511,- | |||
|ontology_enrichment_celltype=CL:0000738!5.11e-35!140;CL:0000037!1.06e-27!172;CL:0000566!1.06e-27!172;CL:0000766!7.14e-26!76;CL:0002031!1.86e-25!124;CL:0002032!6.90e-25!165;CL:0000837!6.90e-25!165;CL:0000988!9.36e-25!182;CL:0002087!1.59e-24!119;CL:0000557!3.78e-22!71;CL:0002057!2.88e-21!42;CL:0000860!2.90e-20!45;CL:0000839!3.21e-20!70;CL:0002009!2.24e-19!65;CL:0002194!8.63e-19!63;CL:0000576!8.63e-19!63;CL:0000040!8.63e-19!63;CL:0000559!8.63e-19!63;CL:0000763!9.05e-19!112;CL:0000049!9.05e-19!112;CL:0000791!2.28e-09!18;CL:0000789!2.28e-09!18;CL:0002420!2.28e-09!18;CL:0002419!2.28e-09!18;CL:0000790!2.28e-09!18;CL:0000134!2.55e-07!358;CL:0000084!8.25e-07!25;CL:0000827!8.25e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.08e-18;33!CL:0002057;3.08e-18;33!CL:0000473;4.12e-15;39!CL:0000234;4.12e-15;39!CL:0000576;1.39e-12;48!CL:0000766;8.42e-12;69!CL:0000791;2.12e-09;18!CL:0000789;2.12e-09;18!CL:0002419;2.12e-09;18!CL:0002087;3.10e-08;104!CL:0000738;3.18e-07;136!CL:0000084;8.66e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.08e-35,136;CL:0000037,8.69e-28,168;CL:0000766,1.79e-26,72;CL:0002031,1.32e-25,120;CL:0002032,5.82e-25,161;CL:0000837,5.82e-25,161;CL:0000988,9.90e-25,177;CL:0002087,1.12e-24,115;CL:0000557,1.13e-22,67;CL:0000473,2.63e-21,48;CL:0000234,2.63e-21,48;CL:0000860,2.82e-21,42;CL:0002057,2.82e-21,42;CL:0000839,1.10e-20,66;CL:0002009,7.19e-20,61;CL:0002194,2.76e-19,59;CL:0000576,2.76e-19,59;CL:0000040,2.76e-19,59;CL:0000559,2.76e-19,59;CL:0000763,5.73e-19,108;CL:0000049,5.73e-19,108;CL:0000791,2.27e-09,18;CL:0000789,2.27e-09,18;CL:0002420,2.27e-09,18;CL:0002419,2.27e-09,18;CL:0000790,2.27e-09,18;CL:0000134,3.21e-07,354;CL:0000084,8.21e-07,25;CL:0000827,8.21e-07,25 | |||
|ontology_enrichment_development_v019=CL:0002057;9.73e-16;42!CL:0000790;2.12e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.13e-26!112;UBERON:0002390!8.61e-25!102;UBERON:0003061!8.61e-25!102;UBERON:0002405!1.66e-20!115;UBERON:0002371!9.14e-18!80;UBERON:0001474!6.90e-16!86;UBERON:0003081!2.10e-13!216;UBERON:0004765!3.70e-10!101;UBERON:0001434!3.70e-10!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.97e-26,108;UBERON:0002390,3.79e-25,98;UBERON:0003061,3.79e-25,98;UBERON:0002405,9.55e-21,93;UBERON:0002371,4.35e-18,76;UBERON:0001474,4.15e-16,82;UBERON:0003081,2.71e-15,203;UBERON:0004765,3.31e-13,90;UBERON:0001434,2.35e-09,100;UBERON:0000926,2.43e-07,315;UBERON:0004120,2.43e-07,315;UBERON:0006603,2.43e-07,315 | |||
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| ||
|short_description=p1@ERN1 | |||
}} | }} |
Latest revision as of 19:16, 16 September 2015
Short description: | p1@ERN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ERN1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000433197, NM_001433, uc002jdz.2_5end |
EntrezGene: | ERN1 |
HGNC: | 3449 |
UniProt: | O75460 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.08e-35 | 136 |
hematopoietic stem cell | 8.69e-28 | 168 |
myeloid leukocyte | 1.79e-26 | 72 |
hematopoietic lineage restricted progenitor cell | 1.32e-25 | 120 |
hematopoietic oligopotent progenitor cell | 5.82e-25 | 161 |
hematopoietic multipotent progenitor cell | 5.82e-25 | 161 |
hematopoietic cell | 9.90e-25 | 177 |
nongranular leukocyte | 1.12e-24 | 115 |
granulocyte monocyte progenitor cell | 1.13e-22 | 67 |
defensive cell | 2.63e-21 | 48 |
phagocyte | 2.63e-21 | 48 |
classical monocyte | 2.82e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.82e-21 | 42 |
myeloid lineage restricted progenitor cell | 1.10e-20 | 66 |
macrophage dendritic cell progenitor | 7.19e-20 | 61 |
monopoietic cell | 2.76e-19 | 59 |
monocyte | 2.76e-19 | 59 |
monoblast | 2.76e-19 | 59 |
promonocyte | 2.76e-19 | 59 |
myeloid cell | 5.73e-19 | 108 |
common myeloid progenitor | 5.73e-19 | 108 |
mature alpha-beta T cell | 2.27e-09 | 18 |
alpha-beta T cell | 2.27e-09 | 18 |
immature T cell | 2.27e-09 | 18 |
mature T cell | 2.27e-09 | 18 |
immature alpha-beta T cell | 2.27e-09 | 18 |
mesenchymal cell | 3.21e-07 | 354 |
T cell | 8.21e-07 | 25 |
pro-T cell | 8.21e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.97e-26 | 108 |
hematopoietic system | 3.79e-25 | 98 |
blood island | 3.79e-25 | 98 |
immune system | 9.55e-21 | 93 |
bone marrow | 4.35e-18 | 76 |
bone element | 4.15e-16 | 82 |
lateral plate mesoderm | 2.71e-15 | 203 |
skeletal element | 3.31e-13 | 90 |
skeletal system | 2.35e-09 | 100 |
mesoderm | 2.43e-07 | 315 |
mesoderm-derived structure | 2.43e-07 | 315 |
presumptive mesoderm | 2.43e-07 | 315 |