FF:10465-106H6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005172 | ||
|accession_numbers=CAGE;DRX007931;DRR008803;DRZ000228;DRZ001613;DRZ011578;DRZ012963 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1909 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100849,FF:0101584 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:69985734..69985749,+!p2@MITF!2.48!298.60!MITF;;chr22:38380543..38380569,-!p1@SOX10!2.43!270.05!SOX10;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.97!93.06!EN2;;chr1:25291475..25291511,-!p2@RUNX3!1.78!58.81!RUNX3;;chr2:239148671..239148686,-!p1@HES6!1.74!190.69!HES6;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!49.96!TFAP2A;;chr6:391743..391759,+!p1@IRF4!1.58!37.40!IRF4;;chr3:69985792..69985803,+!p7@MITF!1.58!37.40!MITF;;chr9:102584262..102584276,+!p1@NR4A3!1.55!74.79!NR4A3;;chr2:223163706..223163730,-!p1@PAX3!1.54!33.68!PAX3;;chr17:41622925..41622976,-!p3@ETV4!1.51!46.25!ETV4;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!49.67!TFAP2A;;chr7:28448965..28448994,+!p2@CREB5!1.47!97.63!CREB5;;chr17:59477233..59477263,+!p1@TBX2!1.47!85.64!TBX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.44!29.97!TFAP2A;;chr8:80679993..80680011,-!p1@HEY1!1.43!37.40!HEY1;;chr10:35484053..35484076,+!p1@CREM!1.42!61.95!CREM;;chr12:26277817..26277863,-!p2@BHLHE41!1.39!31.40!BHLHE41;;chr12:52445218..52445237,+!p1@NR4A1!1.36!264.63!NR4A1;;chr4:109089901..109089930,-!p3@LEF1!1.36!21.98!LEF1;;chr15:42749722..42749739,-!p2@ZFP106!1.33!35.97!ZFP106;;chr17:41622765..41622821,-!p2@ETV4!1.29!28.26!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!1.28!22.84!TFAP2C;;chr9:102584278..102584285,+!p5@NR4A3!1.27!17.70!NR4A3;;chr8:22550982..22550999,-!p1@EGR3!1.25!46.82!EGR3;;chr1:158985493..158985535,+!p4@IFI16!1.24!24.55!IFI16;;chr1:25256756..25256774,-!p1@RUNX3!1.23!29.97!RUNX3;;chr17:59477275..59477286,+!p3@TBX2!1.23!21.12!TBX2;;chr1:165414325..165414369,-!p1@RXRG!1.23!15.99!RXRG;;chr1:165414227..165414242,-!p2@RXRG!1.22!15.42!RXRG;;chr19:47523058..47523114,+!p1@NPAS1!1.21!15.13!NPAS1;;chr10:131762504..131762555,-!p1@EBF3!1.21!15.13!EBF3;;chr9:102584241..102584261,+!p4@NR4A3!1.18!21.98!NR4A3;;chr19:9609272..9609297,-!p1@ZNF560!1.13!12.56!ZNF560;;chr11:16627528..16627550,-!p7@SOX6!1.12!12.28!SOX6;;chr17:46688334..46688385,-!p1@HOXB7!1.09!16.27!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!1.09!13.99!HOXC4;;chr12:85673977..85674015,+!p1@ALX1!1.09!11.42!ALX1;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.39!ETV4;;chr8:11561684..11561751,+!p1@GATA4!1.08!11.13!GATA4;;chr10:35484090..35484104,+!p6@CREM!1.05!10.28!CREM;;chr7:96654026..96654061,-!p2@DLX5!1.04!9.99!DLX5;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.71!TFAP2A;;chr8:22550530..22550609,-!p2@EGR3!1.03!9.71!EGR3;;chr10:111987079..111987115,+!p3@MXI1!1.00!12.56!MXI1;;chr8:80680024..80680046,-!p2@HEY1!0.98!9.71!HEY1;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.56!PKNOX2;;chr11:16629369..16629392,-!p5@SOX6!0.97!8.28!SOX6;;chr12:52448338..52448401,+!p7@NR4A1!0.97!8.28!NR4A1;;chr22:22874610..22874616,-!p1@ZNF280A!0.97!8.28!ZNF280A;;chr7:1570388..1570418,+!p2@MAFK!0.96!17.98!MAFK;;chr7:28725740..28725778,+!p1@CREB5!0.95!72.79!CREB5;;chr9:102584159..102584174,+!p2@NR4A3!0.95!14.56!NR4A3;;chr17:41623009..41623053,-!p4@ETV4!0.95!13.13!ETV4;;chr2:145277640..145277771,-!p1@ZEB2!0.94!107.33!ZEB2;;chr3:141087339..141087387,+!p2@ZBTB38!0.94!82.78!ZBTB38;;chr8:49833948..49833973,-!p2@SNAI2!0.94!51.38!SNAI2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.94!7.71!ZNF676;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.93!345.70!TBX19;;chr2:145277882..145277967,-!p3@ZEB2!0.93!13.13!ZEB2;;chr7:28448995..28449011,+!p4@CREB5!0.93!10.85!CREB5;;chr12:52431016..52431071,+!p4@NR4A1!0.93!8.85!NR4A1;;chr11:16629261..16629284,-!p1@SOX6!0.93!7.42!SOX6;;chr8:49833978..49833996,-!p1@SNAI2!0.92!158.43!SNAI2;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.12!BHLHE41;;chr12:26277929..26277955,-!p3@BHLHE41!0.92!10.56!BHLHE41;;chr15:80696703..80696754,+!p1@ARNT2!0.92!9.99!ARNT2;;chr8:28748099..28748141,+!p2@HMBOX1!0.91!23.12!HMBOX1;;chr20:50179368..50179392,-!p2@NFATC2!0.91!9.42!NFATC2;;chr3:141151009..141151033,+!p10@ZBTB38!0.91!7.14!ZBTB38;;chr5:137804484..137804498,+!p2@EGR1!0.90!28.83!EGR1;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.85!PAX9;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.85!HOXD8;;chr1:157108130..157108173,-!p1@ETV3!0.88!50.24!ETV3;;chr17:41622731..41622764,-!p5@ETV4!0.88!6.57!ETV4;;chr17:46703687..46703740,-!p1@HOXB9!0.88!6.57!HOXB9;;chr19:3574330..3574393,+!p2@HMG20B!0.88!6.57!HMG20B;;chr8:128748308..128748324,+!p2@MYC!0.87!187.27!MYC;;chr2:157189180..157189290,-!p1@NR4A2!0.87!35.68!NR4A2;;chr8:128750654..128750793,+!p3@MYC!0.87!26.83!MYC;;chr18:6414884..6414942,-!p1@L3MBTL4!0.86!7.99!L3MBTL4;;chr17:46682321..46682362,-!p1@HOXB6!0.86!6.28!HOXB6;;chr19:3574157..3574180,+!p4@HMG20B!0.86!6.28!HMG20B;;chr6:10415484..10415508,-!p3@TFAP2A!0.86!6.28!TFAP2A;;chr7:96634850..96634874,+!p3@DLX6!0.86!6.28!DLX6;;chr22:38597987..38598021,+!p2@MAFF!0.85!39.97!MAFF;;chr19:45971246..45971265,+!p1@FOSB!0.84!117.61!FOSB;;chr9:102584329..102584341,+!p6@NR4A3!0.84!5.99!NR4A3;;chr12:52448420..52448460,+!p5@NR4A1!0.84!5.99!NR4A1;;chr22:38598086..38598105,+!p1@MAFF!0.83!66.51!MAFF;;chr3:141868357..141868393,-!p3@TFDP2!0.83!40.82!TFDP2;;chr4:109090075..109090095,-!p2@LEF1!0.83!5.71!LEF1;;chr12:5244821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| |expression_enrichment_score=chr3:69985734..69985749,+!p2@MITF!2.48!298.60!MITF;;chr22:38380543..38380569,-!p1@SOX10!2.43!270.05!SOX10;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.97!93.06!EN2;;chr1:25291475..25291511,-!p2@RUNX3!1.78!58.81!RUNX3;;chr2:239148671..239148686,-!p1@HES6!1.74!190.69!HES6;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!49.96!TFAP2A;;chr6:391743..391759,+!p1@IRF4!1.58!37.40!IRF4;;chr3:69985792..69985803,+!p7@MITF!1.58!37.40!MITF;;chr9:102584262..102584276,+!p1@NR4A3!1.55!74.79!NR4A3;;chr2:223163706..223163730,-!p1@PAX3!1.54!33.68!PAX3;;chr17:41622925..41622976,-!p3@ETV4!1.51!46.25!ETV4;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!49.67!TFAP2A;;chr7:28448965..28448994,+!p2@CREB5!1.47!97.63!CREB5;;chr17:59477233..59477263,+!p1@TBX2!1.47!85.64!TBX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.44!29.97!TFAP2A;;chr8:80679993..80680011,-!p1@HEY1!1.43!37.40!HEY1;;chr10:35484053..35484076,+!p1@CREM!1.42!61.95!CREM;;chr12:26277817..26277863,-!p2@BHLHE41!1.39!31.40!BHLHE41;;chr12:52445218..52445237,+!p1@NR4A1!1.36!264.63!NR4A1;;chr4:109089901..109089930,-!p3@LEF1!1.36!21.98!LEF1;;chr15:42749722..42749739,-!p2@ZFP106!1.33!35.97!ZFP106;;chr17:41622765..41622821,-!p2@ETV4!1.29!28.26!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!1.28!22.84!TFAP2C;;chr9:102584278..102584285,+!p5@NR4A3!1.27!17.70!NR4A3;;chr8:22550982..22550999,-!p1@EGR3!1.25!46.82!EGR3;;chr1:158985493..158985535,+!p4@IFI16!1.24!24.55!IFI16;;chr1:25256756..25256774,-!p1@RUNX3!1.23!29.97!RUNX3;;chr17:59477275..59477286,+!p3@TBX2!1.23!21.12!TBX2;;chr1:165414325..165414369,-!p1@RXRG!1.23!15.99!RXRG;;chr1:165414227..165414242,-!p2@RXRG!1.22!15.42!RXRG;;chr19:47523058..47523114,+!p1@NPAS1!1.21!15.13!NPAS1;;chr10:131762504..131762555,-!p1@EBF3!1.21!15.13!EBF3;;chr9:102584241..102584261,+!p4@NR4A3!1.18!21.98!NR4A3;;chr19:9609272..9609297,-!p1@ZNF560!1.13!12.56!ZNF560;;chr11:16627528..16627550,-!p7@SOX6!1.12!12.28!SOX6;;chr17:46688334..46688385,-!p1@HOXB7!1.09!16.27!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!1.09!13.99!HOXC4;;chr12:85673977..85674015,+!p1@ALX1!1.09!11.42!ALX1;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.39!ETV4;;chr8:11561684..11561751,+!p1@GATA4!1.08!11.13!GATA4;;chr10:35484090..35484104,+!p6@CREM!1.05!10.28!CREM;;chr7:96654026..96654061,-!p2@DLX5!1.04!9.99!DLX5;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.71!TFAP2A;;chr8:22550530..22550609,-!p2@EGR3!1.03!9.71!EGR3;;chr10:111987079..111987115,+!p3@MXI1!1.00!12.56!MXI1;;chr8:80680024..80680046,-!p2@HEY1!0.98!9.71!HEY1;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.56!PKNOX2;;chr11:16629369..16629392,-!p5@SOX6!0.97!8.28!SOX6;;chr12:52448338..52448401,+!p7@NR4A1!0.97!8.28!NR4A1;;chr22:22874610..22874616,-!p1@ZNF280A!0.97!8.28!ZNF280A;;chr7:1570388..1570418,+!p2@MAFK!0.96!17.98!MAFK;;chr7:28725740..28725778,+!p1@CREB5!0.95!72.79!CREB5;;chr9:102584159..102584174,+!p2@NR4A3!0.95!14.56!NR4A3;;chr17:41623009..41623053,-!p4@ETV4!0.95!13.13!ETV4;;chr2:145277640..145277771,-!p1@ZEB2!0.94!107.33!ZEB2;;chr3:141087339..141087387,+!p2@ZBTB38!0.94!82.78!ZBTB38;;chr8:49833948..49833973,-!p2@SNAI2!0.94!51.38!SNAI2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.94!7.71!ZNF676;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.93!345.70!TBX19;;chr2:145277882..145277967,-!p3@ZEB2!0.93!13.13!ZEB2;;chr7:28448995..28449011,+!p4@CREB5!0.93!10.85!CREB5;;chr12:52431016..52431071,+!p4@NR4A1!0.93!8.85!NR4A1;;chr11:16629261..16629284,-!p1@SOX6!0.93!7.42!SOX6;;chr8:49833978..49833996,-!p1@SNAI2!0.92!158.43!SNAI2;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.12!BHLHE41;;chr12:26277929..26277955,-!p3@BHLHE41!0.92!10.56!BHLHE41;;chr15:80696703..80696754,+!p1@ARNT2!0.92!9.99!ARNT2;;chr8:28748099..28748141,+!p2@HMBOX1!0.91!23.12!HMBOX1;;chr20:50179368..50179392,-!p2@NFATC2!0.91!9.42!NFATC2;;chr3:141151009..141151033,+!p10@ZBTB38!0.91!7.14!ZBTB38;;chr5:137804484..137804498,+!p2@EGR1!0.90!28.83!EGR1;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.85!PAX9;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.85!HOXD8;;chr1:157108130..157108173,-!p1@ETV3!0.88!50.24!ETV3;;chr17:41622731..41622764,-!p5@ETV4!0.88!6.57!ETV4;;chr17:46703687..46703740,-!p1@HOXB9!0.88!6.57!HOXB9;;chr19:3574330..3574393,+!p2@HMG20B!0.88!6.57!HMG20B;;chr8:128748308..128748324,+!p2@MYC!0.87!187.27!MYC;;chr2:157189180..157189290,-!p1@NR4A2!0.87!35.68!NR4A2;;chr8:128750654..128750793,+!p3@MYC!0.87!26.83!MYC;;chr18:6414884..6414942,-!p1@L3MBTL4!0.86!7.99!L3MBTL4;;chr17:46682321..46682362,-!p1@HOXB6!0.86!6.28!HOXB6;;chr19:3574157..3574180,+!p4@HMG20B!0.86!6.28!HMG20B;;chr6:10415484..10415508,-!p3@TFAP2A!0.86!6.28!TFAP2A;;chr7:96634850..96634874,+!p3@DLX6!0.86!6.28!DLX6;;chr22:38597987..38598021,+!p2@MAFF!0.85!39.97!MAFF;;chr19:45971246..45971265,+!p1@FOSB!0.84!117.61!FOSB;;chr9:102584329..102584341,+!p6@NR4A3!0.84!5.99!NR4A3;;chr12:52448420..52448460,+!p5@NR4A1!0.84!5.99!NR4A1;;chr22:38598086..38598105,+!p1@MAFF!0.83!66.51!MAFF;;chr3:141868357..141868393,-!p3@TFDP2!0.83!40.82!TFDP2;;chr4:109090075..109090095,-!p2@LEF1!0.83!5.71!LEF1;;chr12:5244821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F2!0.24!5.14!TTF2;;chr2:217277480..217277505,+!p2@SMARCAL1!0.24!4.57!SMARCAL1;;chr19:37096194..37096235,+!p1@ZNF382!0.24!4.28!ZNF382;;chr6:91006518..91006570,-!p1@BACH2!0.24!2.85!BACH2;;chr10:63809134..63809145,+!p6@ARID5B!0.24!2.85!ARID5B;;chr20:25677443..25677464,-!p2@ZNF337!0.24!2.85!ZNF337;;chr2:37458749..37458766,-!p2@CEBPZ!0.24!2.57!CEBPZ;;chr12:3068466..3068495,+!p3@TEAD4!0.24!2.57!TEAD4;;chr1:8763510..8763538,-!p15@RERE!0.24!1.71!RERE;;chr2:217277271..217277290,+!p3@SMARCAL1!0.24!1.71!SMARCAL1;;chrX:119384566..119384585,+!p2@ZBTB33!0.24!1.71!ZBTB33;;chr10:76585303..76585354,+!p4@KAT6B!0.24!1.43!KAT6B;;chr5:139494553..139494573,+!p6@PURA!0.24!1.43!PURA;;chr7:104752306..104752335,+!p4@MLL5!0.24!1.43!MLL5;;chr8:145159846..145159889,+!p6@MAF1!0.24!1.43!MAF1;;chr15:56535722..56535764,-!p3@RFX7!0.24!1.43!RFX7;;chr7:14029312..14029325,-!p4@ETV1!0.24!1.14!ETV1;;chr13:46543859..46543881,-!p10@ZC3H13!0.24!1.14!ZC3H13;;chr3:18486354..18486377,-!p2@SATB1!0.24!1.14!SATB1;;chr1:8938709..8938720,-!p3@ENO1!0.23!74.79!ENO1;;chr15:77197655..77197716,-!p1@SCAPER!0.23!13.13!SCAPER;;chr19:49865646..49865718,-!p1@TEAD2!0.23!12.56!TEAD2;;chr2:113033164..113033219,+!p1@ZC3H6!0.23!12.28!ZC3H6;;chr2:178257401..178257432,-!p4@NFE2L2!0.23!7.99!NFE2L2;;chr19:58694421..58694485,+!p1@ZNF274!0.23!7.42!ZNF274;;chr1:8763440..8763460,-!p2@RERE!0.23!7.14!RERE;;chr16:3285144..3285191,-!p1@ZNF200!0.23!6.85!ZNF200;;chr7:99102865..99102894,+!p1@ZKSCAN5!0.23!6.85!ZKSCAN5;;chr12:53774567..53774658,+!p2@SP1!0.23!6.85!SP1;;chr1:149871114..149871134,+!p3@BOLA1!0.23!5.42!BOLA1;;chr1:173837488..173837526,+!p1@ZBTB37!0.23!4.57!ZBTB37;;chr1:249132556..249132573,+!p3@ZNF672!0.23!3.71!ZNF672;;chr6:15246200..15246214,+!p2@JARID2!0.23!3.43!JARID2;;chr14:23755247..23755278,-!p2@HOMEZ!0.23!2.28!HOMEZ;;chr16:29818132..29818144,+!p12@MAZ!0.23!2.28!MAZ;;chr1:42800836..42800847,-!p3@FOXJ3!0.23!2.28!FOXJ3;;chr1:6845582..6845591,+!p2@CAMTA1!0.23!2.28!CAMTA1;;chr18:77867121..77867138,+!p2@ADNP2!0.23!2.00!ADNP2;;chr18:42260059..42260132,+!p1@SETBP1!0.23!1.71!SETBP1;;chr19:17356189..17356221,-!p2@NR2F6!0.23!1.71!NR2F6;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.23!1.71!ZKSCAN1;;chr3:107244229..107244254,+!p3@BBX!0.23!1.71!BBX;;chr16:89940220..89940242,+!p3@TCF25!0.23!1.43!TCF25;;chr17:38792325..38792330,-!p3@SMARCE1!0.23!1.43!SMARCE1;;chr18:74207186..74207204,-!p3@ZNF516!0.23!1.43!ZNF516;;chr12:125002861..125002894,-!p7@NCOR2!0.23!1.43!NCOR2;;chr2:231077626..231077651,-!p6@SP110!0.23!1.14!SP110;;chr6:43139102..43139112,+!p7@SRF!0.23!1.14!SRF;;chr19:56988864..56988924,-!p2@ZNF667!0.23!1.14!ZNF667;;chr20:52185283..52185294,-!p5@ZNF217!0.23!1.14!ZNF217;;chr2:28616471..28616478,+!p7@FOSL2!0.23!0.86!FOSL2;;chr7:108210048..108210169,-!p1@THAP5,p2@PNPLA8!0.22!44.82!THAP5;;chr22:35653468..35653501,+!p1@HMGXB4!0.22!37.97!HMGXB4;;chr19:19516561..19516644,+!p1@GATAD2A!0.22!31.69!GATAD2A;;chr2:242576460..242576600,-!p1@THAP4!0.22!22.55!THAP4;;chr7:148892653..148892729,+!p1@ZNF282!0.22!21.12!ZNF282;;chr19:42580274..42580375,+!p1@ZNF574!0.22!16.56!ZNF574;;chr17:40897043..40897087,-!p1@EZH1!0.22!12.85!EZH1;;chr18:72265084..72265143,+!p1@ZNF407!0.22!10.56!ZNF407;;chr19:18392274..18392286,-!p3@JUND!0.22!9.13!JUND;;chr18:77160282..77160343,+!p2@NFATC1!0.22!8.56!NFATC1;;chr8:146228270..146228295,-!p1@ZNF252!0.22!7.71!ZNF252P;;chr1:156470515..156470542,-!p2@MEF2D!0.22!7.14!MEF2D;;chr6:20402102..20402152,+!p1@E2F3!0.22!5.42!E2F3;;chr5:178487354..178487408,+!p1@ZNF354C!0.22!3.71!ZNF354C;;chr21:36262032..36262062,-!p5@RUNX1!0.22!3.14!RUNX1;;chr2:148778973..148779035,+!p3@MBD5!0.22!3.14!MBD5;;chr8:146228226..146228264,-!p2@ZNF252!0.22!2.85!ZNF252P;;chr17:41322332..41322351,-!p4@BRCA1!0.22!2.85!BRCA1;;chr19:44645700..44645725,+!p3@ZNF226,p3@ZNF234!0.22!2.57!ZNF234;;chr7:21467802..21467840,+!p3@SP4!0.22!2.28!SP4;;chr13:41635067..41635100,-!p5@ELF1!0.22!2.00!ELF1;;chr9:137218262..137218273,+!p5@RXRA!0.22!1.71!RXRA;;chr9:20621927..20621996,-!p3@MLLT3!0.22!1.71!MLLT3;;chr2:214016314..214016343,-!p2@IKZF2!0.22!1.71!IKZF2;;chr2:145282041..145282092,-!p8@ZEB2!0.22!1.43!ZEB2;;chr20:48807430..48807439,+!p8@CEBPB!0.22!1.43!CEBPB;;chrX:66763815..66763854,+!p2@AR!0.22!1.14!AR;;chr10:3819310..3819325,-!p5@KLF6!0.22!1.14!KLF6;;chr5:124080203..124080258,-!p5@ZNF608!0.22!0.86!ZNF608;;chr7:1577111..1577132,+!p4@MAFK!0.22!0.86!MAFK;;chr19:58383174..58383178,-!p3@ZNF814!0.22!0.86!ZNF814;;chr1:61548118..61548129,+!p9@NFIA!0.22!0.86!NFIA;;chr20:44600785..44600794,-!p7@ZNF335!0.22!0.86!ZNF335;;chr22:39917189..39917207,+!p5@ATF4!0.22!0.86!ATF4;;chr19:20748603..20748606,-!p4@ZNF737!0.22!0.86!ZNF737;;chr19:21579964..21579975,+!p2@ZNF493!0.22!0.86!ZNF493;;chr17:40719102..40719141,+!p1@MLX!0.21!46.25!MLX;;chr12:12764773..12764852,+!p1@CREBL2!0.21!36.54!CREBL2;;chr19:6424783..6424802,-!p2@KHSRP!0.21!29.12!KHSRP;;chr19:9251081..9251110,+!p1@ZNF317!0.21!13.70!ZNF317;;chr19:58790314..58790358,+!p1@ZNF8!0.21!10.56!ZNF8;;chr1:149871135..149871169,+!p2@BOLA1!0.21!8.85!BOLA1;;chr12:57400261..57400344,-!p1@ZBTB39!0.21!6.28!ZB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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line=FF:0100849 | |fonse_cell_line=FF:0100849 | ||
|fonse_cell_line_closure=FF:0100849 | |fonse_cell_line_closure=FF:0100849 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/melanoma%2520cell%2520line%253aG-361.CNhs11254.10465-106H6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10465-106H6 | |id=FF:10465-106H6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101584 | ||
|is_obsolete= | |||
|library_id=CNhs11254 | |||
|library_id_phase_based=2:CNhs11254 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10465 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10465 | |||
|name=melanoma cell line:G-361 | |name=melanoma cell line:G-361 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11254,LSID757,release008,COMPLETED | |profile_hcage=CNhs11254,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.109060369074458,0,0.170473320746578,0,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.216708248122278,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0679788476337783,0,0,0,0,0,0,0,0,0.0303151634243945,0,0,0,0,0,0.0480613748611208,0,-0.0969923612426051,0,0,0.0988133906946568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109060369074458,0.054530184537229,0,0,0,0,0,-2.22486509293685e-06,0,0,0,0.0460730878380375,0.145064341765662,0.098078508953877,0,0,0,0.0981216666700473,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0.807365565316881,0,0,0,0,0,0,0.0379617181358919,0,0,0,-0.057439935027299,-0.0889418739803886,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=60.016 | |rna_weight_ug=60.016 | ||
|sample_age=31 | |sample_age=31 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0991 | |sample_cell_catalog=RCB0991 | ||
|sample_cell_line=G-361 | |sample_cell_line=G-361 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.24598899759642e-264!GO:0043231;intracellular membrane-bound organelle;1.48056186719016e-224!GO:0043227;membrane-bound organelle;2.39503981154275e-224!GO:0043226;organelle;7.93040026632181e-222!GO:0043229;intracellular organelle;2.40488721264691e-221!GO:0005737;cytoplasm;1.06599010015824e-191!GO:0044422;organelle part;2.26896994258072e-153!GO:0044446;intracellular organelle part;6.78922596472184e-152!GO:0044444;cytoplasmic part;5.36266862360823e-147!GO:0032991;macromolecular complex;1.26989005380275e-102!GO:0044237;cellular metabolic process;3.05977748647671e-99!GO:0044238;primary metabolic process;5.27495706281165e-99!GO:0030529;ribonucleoprotein complex;4.27293383380634e-92!GO:0043170;macromolecule metabolic process;1.82995251251988e-90!GO:0005634;nucleus;1.39245100016501e-87!GO:0043233;organelle lumen;5.55491407146613e-87!GO:0031974;membrane-enclosed lumen;5.55491407146613e-87!GO:0003723;RNA binding;1.46930878605186e-81!GO:0044428;nuclear part;4.28441557613331e-78!GO:0005739;mitochondrion;2.22466888179101e-75!GO:0005515;protein binding;4.80391666269824e-61!GO:0006396;RNA processing;1.18224067994167e-57!GO:0031090;organelle membrane;1.18224067994167e-57!GO:0005840;ribosome;9.04447399436513e-54!GO:0006412;translation;9.76288248976375e-54!GO:0043283;biopolymer metabolic process;2.13990766228277e-53!GO:0010467;gene expression;2.13990766228277e-53!GO:0044429;mitochondrial part;2.23802319983752e-52!GO:0016043;cellular component organization and biogenesis;1.32211600595771e-51!GO:0043234;protein complex;1.60645730378307e-50!GO:0019538;protein metabolic process;5.82706367338869e-50!GO:0031981;nuclear lumen;8.38176536400578e-50!GO:0033036;macromolecule localization;8.38176536400578e-50!GO:0015031;protein transport;8.0181281932115e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.04515077562357e-47!GO:0003735;structural constituent of ribosome;3.96747342667645e-46!GO:0008104;protein localization;8.41697864906028e-46!GO:0044260;cellular macromolecule metabolic process;2.21143780038685e-45!GO:0044267;cellular protein metabolic process;3.81606941352898e-45!GO:0045184;establishment of protein localization;5.03872279142812e-45!GO:0009058;biosynthetic process;6.00949366838773e-45!GO:0044249;cellular biosynthetic process;9.54970208320377e-45!GO:0031967;organelle envelope;2.10432089976402e-44!GO:0031975;envelope;3.61223710908342e-44!GO:0009059;macromolecule biosynthetic process;4.98624664615029e-42!GO:0033279;ribosomal subunit;1.9879892219016e-41!GO:0046907;intracellular transport;4.67047060525195e-40!GO:0005829;cytosol;5.5287702384641e-40!GO:0016071;mRNA metabolic process;6.72788584000031e-40!GO:0008380;RNA splicing;9.77983321099091e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.18052137516083e-36!GO:0003676;nucleic acid binding;1.95984333033145e-35!GO:0006397;mRNA processing;1.97278327862329e-34!GO:0006996;organelle organization and biogenesis;1.54830357180681e-33!GO:0006886;intracellular protein transport;9.29975167448465e-33!GO:0005740;mitochondrial envelope;2.51410328160255e-32!GO:0048770;pigment granule;9.7050554955969e-32!GO:0042470;melanosome;9.7050554955969e-32!GO:0065003;macromolecular complex assembly;9.79217903900996e-31!GO:0019866;organelle inner membrane;5.08915067794719e-30!GO:0031966;mitochondrial membrane;5.8785484509381e-30!GO:0005654;nucleoplasm;7.68618629467083e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.61958658100894e-29!GO:0005743;mitochondrial inner membrane;2.59593681856598e-28!GO:0000166;nucleotide binding;2.98190287610928e-28!GO:0043228;non-membrane-bound organelle;1.61604083516513e-27!GO:0043232;intracellular non-membrane-bound organelle;1.61604083516513e-27!GO:0051649;establishment of cellular localization;1.82560983426288e-27!GO:0022607;cellular component assembly;3.12749325779224e-27!GO:0051641;cellular localization;4.06058061291582e-27!GO:0005681;spliceosome;1.44540151164853e-26!GO:0016070;RNA metabolic process;1.45791893243399e-26!GO:0044445;cytosolic part;8.98968141018503e-26!GO:0044451;nucleoplasm part;2.90556364255297e-24!GO:0031980;mitochondrial lumen;2.98801999315934e-24!GO:0005759;mitochondrial matrix;2.98801999315934e-24!GO:0006259;DNA metabolic process;5.55578004210534e-24!GO:0012505;endomembrane system;6.32397224271591e-24!GO:0005730;nucleolus;3.45755445343854e-23!GO:0016462;pyrophosphatase activity;4.44450505991201e-23!GO:0016874;ligase activity;6.12874223905475e-23!GO:0006119;oxidative phosphorylation;6.6533942178105e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.96370771296736e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;9.0824508192812e-23!GO:0017111;nucleoside-triphosphatase activity;1.19360292444438e-22!GO:0015934;large ribosomal subunit;1.50451997235381e-21!GO:0044455;mitochondrial membrane part;5.81245424825389e-21!GO:0015935;small ribosomal subunit;6.92920663456136e-21!GO:0032553;ribonucleotide binding;6.41150569719225e-20!GO:0032555;purine ribonucleotide binding;6.41150569719225e-20!GO:0017076;purine nucleotide binding;1.97579914078425e-19!GO:0006512;ubiquitin cycle;2.03900847255453e-19!GO:0006457;protein folding;2.76181220445775e-19!GO:0022618;protein-RNA complex assembly;4.59600635861766e-19!GO:0005783;endoplasmic reticulum;5.13258320630634e-18!GO:0042254;ribosome biogenesis and assembly;5.13258320630634e-18!GO:0005794;Golgi apparatus;1.25743680680472e-17!GO:0044265;cellular macromolecule catabolic process;1.55886390653649e-17!GO:0008135;translation factor activity, nucleic acid binding;4.13650909315284e-17!GO:0005746;mitochondrial respiratory chain;7.95277306467395e-17!GO:0005761;mitochondrial ribosome;1.46434442147497e-16!GO:0000313;organellar ribosome;1.46434442147497e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.66294387678956e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.4489024504195e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.23414717524632e-16!GO:0019941;modification-dependent protein catabolic process;4.82132914372077e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.82132914372077e-16!GO:0005524;ATP binding;4.85077212495795e-16!GO:0006605;protein targeting;4.97789630905868e-16!GO:0044257;cellular protein catabolic process;7.6429296045844e-16!GO:0043285;biopolymer catabolic process;8.72332089261839e-16!GO:0008134;transcription factor binding;9.69836705578435e-16!GO:0032559;adenyl ribonucleotide binding;9.87702688416578e-16!GO:0007049;cell cycle;1.05617372782895e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.11299746893376e-15!GO:0006974;response to DNA damage stimulus;4.02575680005159e-15!GO:0030554;adenyl nucleotide binding;4.02912193341232e-15!GO:0006399;tRNA metabolic process;4.64960802861751e-15!GO:0009057;macromolecule catabolic process;5.24190744351234e-15!GO:0044432;endoplasmic reticulum part;6.52113589247556e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.57575813966273e-15!GO:0003954;NADH dehydrogenase activity;7.57575813966273e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.57575813966273e-15!GO:0043412;biopolymer modification;1.09315357234859e-14!GO:0051186;cofactor metabolic process;1.19574254522506e-14!GO:0016887;ATPase activity;1.8011310256297e-14!GO:0048193;Golgi vesicle transport;2.05740975208929e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.49983305142691e-14!GO:0044248;cellular catabolic process;6.74371355965024e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.84258240758325e-14!GO:0042623;ATPase activity, coupled;1.41006737473172e-13!GO:0030163;protein catabolic process;1.88499080192698e-13!GO:0051082;unfolded protein binding;2.28368679199405e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.52489718145952e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.5714922229974e-13!GO:0042773;ATP synthesis coupled electron transport;3.5714922229974e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.809534534189e-13!GO:0000375;RNA splicing, via transesterification reactions;4.809534534189e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.809534534189e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.86659000572691e-13!GO:0045271;respiratory chain complex I;6.86659000572691e-13!GO:0005747;mitochondrial respiratory chain complex I;6.86659000572691e-13!GO:0006281;DNA repair;8.15959373269376e-13!GO:0005635;nuclear envelope;8.40428046554771e-13!GO:0016192;vesicle-mediated transport;9.02729082887448e-13!GO:0006464;protein modification process;1.1983251408849e-12!GO:0044453;nuclear membrane part;1.39716875736381e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.46814099860688e-12!GO:0008565;protein transporter activity;2.20598394877326e-12!GO:0031965;nuclear membrane;2.60798665017033e-12!GO:0003743;translation initiation factor activity;2.78252320898823e-12!GO:0006413;translational initiation;3.10886581553044e-12!GO:0004386;helicase activity;9.78262027113585e-12!GO:0016072;rRNA metabolic process;1.23173330622275e-11!GO:0006364;rRNA processing;1.25793022429123e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.92296617394254e-11!GO:0006446;regulation of translational initiation;1.97785881506405e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.49467133455149e-11!GO:0004812;aminoacyl-tRNA ligase activity;2.49467133455149e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.49467133455149e-11!GO:0005643;nuclear pore;2.7102987147508e-11!GO:0009259;ribonucleotide metabolic process;2.96067777081231e-11!GO:0065002;intracellular protein transport across a membrane;3.13655586829584e-11!GO:0008639;small protein conjugating enzyme activity;3.16925503540052e-11!GO:0006366;transcription from RNA polymerase II promoter;4.22109802214137e-11!GO:0006163;purine nucleotide metabolic process;4.23200720684185e-11!GO:0006732;coenzyme metabolic process;4.23200720684185e-11!GO:0043038;amino acid activation;4.67856647678277e-11!GO:0006418;tRNA aminoacylation for protein translation;4.67856647678277e-11!GO:0043039;tRNA aminoacylation;4.67856647678277e-11!GO:0022402;cell cycle process;5.04739408351285e-11!GO:0050657;nucleic acid transport;5.27951652354797e-11!GO:0051236;establishment of RNA localization;5.27951652354797e-11!GO:0050658;RNA transport;5.27951652354797e-11!GO:0006913;nucleocytoplasmic transport;5.35845547932665e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.4252991828478e-11!GO:0006403;RNA localization;6.3673157473934e-11!GO:0004842;ubiquitin-protein ligase activity;7.13775335358015e-11!GO:0019787;small conjugating protein ligase activity;7.24639737481738e-11!GO:0016604;nuclear body;8.58884210922479e-11!GO:0008026;ATP-dependent helicase activity;1.11887233022068e-10!GO:0003712;transcription cofactor activity;1.11887233022068e-10!GO:0051169;nuclear transport;1.2460827774116e-10!GO:0009150;purine ribonucleotide metabolic process;1.4996278832482e-10!GO:0043687;post-translational protein modification;1.91008651913081e-10!GO:0006461;protein complex assembly;3.11569657590116e-10!GO:0006164;purine nucleotide biosynthetic process;3.28653978446351e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.66076231623487e-10!GO:0009260;ribonucleotide biosynthetic process;6.25065125718624e-10!GO:0005789;endoplasmic reticulum membrane;6.58932686431094e-10!GO:0009719;response to endogenous stimulus;1.13405884049868e-09!GO:0000278;mitotic cell cycle;1.18444905766893e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.18675714389015e-09!GO:0051276;chromosome organization and biogenesis;1.19507569666379e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.21597041344478e-09!GO:0005768;endosome;1.22402189013099e-09!GO:0046930;pore complex;1.50091228984367e-09!GO:0016881;acid-amino acid ligase activity;1.71972213113764e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.86278557867194e-09!GO:0009141;nucleoside triphosphate metabolic process;3.01013862833729e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.01013862833729e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.01013862833729e-09!GO:0015078;hydrogen ion transmembrane transporter activity;3.68137866528793e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;4.41851619808077e-09!GO:0006260;DNA replication;4.63518233828716e-09!GO:0051028;mRNA transport;5.03721130725959e-09!GO:0007005;mitochondrion organization and biogenesis;5.11961127176268e-09!GO:0005694;chromosome;5.5085490568681e-09!GO:0015986;ATP synthesis coupled proton transport;5.76847377556978e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.76847377556978e-09!GO:0044431;Golgi apparatus part;6.45651851625862e-09!GO:0016607;nuclear speck;6.78971574143625e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.3630565549259e-09!GO:0031988;membrane-bound vesicle;7.97518653486434e-09!GO:0009142;nucleoside triphosphate biosynthetic process;8.17643288652132e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.17643288652132e-09!GO:0031982;vesicle;8.55496026487717e-09!GO:0016469;proton-transporting two-sector ATPase complex;1.02532612538956e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.04708857162737e-08!GO:0045333;cellular respiration;1.0843065002795e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.09379554844e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.09379554844e-08!GO:0031410;cytoplasmic vesicle;1.14008134037639e-08!GO:0006323;DNA packaging;1.30155604020815e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.31522378229675e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.31522378229675e-08!GO:0019829;cation-transporting ATPase activity;1.68658531821565e-08!GO:0046034;ATP metabolic process;2.25463298932735e-08!GO:0009060;aerobic respiration;2.77349666649255e-08!GO:0017038;protein import;3.82844391451352e-08!GO:0050794;regulation of cellular process;4.22346075387543e-08!GO:0051188;cofactor biosynthetic process;4.39276290812202e-08!GO:0016740;transferase activity;6.14149371671172e-08!GO:0005788;endoplasmic reticulum lumen;6.1494032582114e-08!GO:0009117;nucleotide metabolic process;6.38828575627969e-08!GO:0051301;cell division;6.49823501232869e-08!GO:0016787;hydrolase activity;7.37542923724969e-08!GO:0009056;catabolic process;7.97263858515676e-08!GO:0009055;electron carrier activity;7.99941386373976e-08!GO:0006754;ATP biosynthetic process;8.36613449091547e-08!GO:0006753;nucleoside phosphate metabolic process;8.36613449091547e-08!GO:0005667;transcription factor complex;9.8743933701286e-08!GO:0016779;nucleotidyltransferase activity;1.22692768514775e-07!GO:0005793;ER-Golgi intermediate compartment;1.22738821184819e-07!GO:0044427;chromosomal part;1.35098351517648e-07!GO:0015630;microtubule cytoskeleton;1.40688912448626e-07!GO:0016568;chromatin modification;1.6332999989236e-07!GO:0044440;endosomal part;1.74207432708121e-07!GO:0010008;endosome membrane;1.74207432708121e-07!GO:0012501;programmed cell death;1.85619578126411e-07!GO:0006915;apoptosis;1.86142842992527e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.06460910409479e-07!GO:0005798;Golgi-associated vesicle;2.23452069421215e-07!GO:0051726;regulation of cell cycle;2.73485808163823e-07!GO:0005773;vacuole;2.85608774846975e-07!GO:0006099;tricarboxylic acid cycle;3.32964611531487e-07!GO:0046356;acetyl-CoA catabolic process;3.32964611531487e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.50382404281331e-07!GO:0043566;structure-specific DNA binding;3.8656990253015e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.08448829472466e-07!GO:0030120;vesicle coat;4.27466476803533e-07!GO:0030662;coated vesicle membrane;4.27466476803533e-07!GO:0005770;late endosome;4.27893737193887e-07!GO:0000074;regulation of progression through cell cycle;4.53849352840796e-07!GO:0000245;spliceosome assembly;5.41941218791206e-07!GO:0048475;coated membrane;5.73947411838644e-07!GO:0030117;membrane coat;5.73947411838644e-07!GO:0043623;cellular protein complex assembly;8.16799299867916e-07!GO:0003924;GTPase activity;9.51336952857305e-07!GO:0006084;acetyl-CoA metabolic process;1.01433794780369e-06!GO:0009108;coenzyme biosynthetic process;1.19126640274887e-06!GO:0003697;single-stranded DNA binding;1.20617820607994e-06!GO:0000087;M phase of mitotic cell cycle;1.25550154213237e-06!GO:0000139;Golgi membrane;1.3446037287773e-06!GO:0003724;RNA helicase activity;1.35252421461213e-06!GO:0022403;cell cycle phase;1.35277866805038e-06!GO:0008219;cell death;1.39292923023642e-06!GO:0016265;death;1.39292923023642e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.77399160803211e-06!GO:0051246;regulation of protein metabolic process;1.78167586808849e-06!GO:0032446;protein modification by small protein conjugation;1.8677610496584e-06!GO:0045259;proton-transporting ATP synthase complex;1.9661901675179e-06!GO:0019222;regulation of metabolic process;2.00044061400088e-06!GO:0016563;transcription activator activity;2.00622792106875e-06!GO:0007067;mitosis;2.05167494951172e-06!GO:0016567;protein ubiquitination;2.3769513031352e-06!GO:0000323;lytic vacuole;2.38121928583053e-06!GO:0005764;lysosome;2.38121928583053e-06!GO:0051187;cofactor catabolic process;2.49703674201606e-06!GO:0065004;protein-DNA complex assembly;2.62501149332878e-06!GO:0003899;DNA-directed RNA polymerase activity;3.01481171520449e-06!GO:0005525;GTP binding;3.48050157249031e-06!GO:0006916;anti-apoptosis;3.90264510385392e-06!GO:0009109;coenzyme catabolic process;4.4018568601189e-06!GO:0008654;phospholipid biosynthetic process;4.60591944029635e-06!GO:0016853;isomerase activity;5.51472757491997e-06!GO:0006752;group transfer coenzyme metabolic process;5.71957683165726e-06!GO:0000314;organellar small ribosomal subunit;6.77527140479704e-06!GO:0005763;mitochondrial small ribosomal subunit;6.77527140479704e-06!GO:0005762;mitochondrial large ribosomal subunit;6.94847291790974e-06!GO:0000315;organellar large ribosomal subunit;6.94847291790974e-06!GO:0003713;transcription coactivator activity;7.76642145579205e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.01577755964134e-05!GO:0048523;negative regulation of cellular process;1.07600231622528e-05!GO:0048471;perinuclear region of cytoplasm;1.17437417587877e-05!GO:0030659;cytoplasmic vesicle membrane;1.17437417587877e-05!GO:0008033;tRNA processing;1.20973206288617e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.47153665659339e-05!GO:0005813;centrosome;1.61472296270336e-05!GO:0051170;nuclear import;1.86525522620726e-05!GO:0006793;phosphorus metabolic process;1.86525522620726e-05!GO:0006796;phosphate metabolic process;1.86525522620726e-05!GO:0044452;nucleolar part;1.89147372117824e-05!GO:0016564;transcription repressor activity;2.13298975898636e-05!GO:0050789;regulation of biological process;2.49975052902013e-05!GO:0000785;chromatin;2.88877611750278e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.91007056659223e-05!GO:0015399;primary active transmembrane transporter activity;2.91007056659223e-05!GO:0032561;guanyl ribonucleotide binding;2.9743457736796e-05!GO:0019001;guanyl nucleotide binding;2.9743457736796e-05!GO:0051427;hormone receptor binding;3.18888024604948e-05!GO:0006613;cotranslational protein targeting to membrane;3.18888024604948e-05!GO:0008186;RNA-dependent ATPase activity;3.23957037649663e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.27909580562941e-05!GO:0042440;pigment metabolic process;3.29516721401743e-05!GO:0006606;protein import into nucleus;3.45072856258929e-05!GO:0000151;ubiquitin ligase complex;3.52533284120871e-05!GO:0031252;leading edge;3.88483286734066e-05!GO:0044433;cytoplasmic vesicle part;4.03175928323097e-05!GO:0005815;microtubule organizing center;4.11947108214299e-05!GO:0006333;chromatin assembly or disassembly;4.56305440510751e-05!GO:0005048;signal sequence binding;4.64130980015734e-05!GO:0000279;M phase;5.47147337157161e-05!GO:0051168;nuclear export;5.91386634351301e-05!GO:0046474;glycerophospholipid biosynthetic process;6.08890740801981e-05!GO:0035257;nuclear hormone receptor binding;6.2632695474948e-05!GO:0009165;nucleotide biosynthetic process;6.32602661669991e-05!GO:0030880;RNA polymerase complex;6.8045823410617e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.83349683905774e-05!GO:0046148;pigment biosynthetic process;6.83349683905774e-05!GO:0006626;protein targeting to mitochondrion;7.24897136007772e-05!GO:0042981;regulation of apoptosis;7.38580462053077e-05!GO:0012506;vesicle membrane;7.60163608621457e-05!GO:0043021;ribonucleoprotein binding;8.85888311175894e-05!GO:0006091;generation of precursor metabolites and energy;9.16545946475401e-05!GO:0004004;ATP-dependent RNA helicase activity;0.000104248217201787!GO:0006383;transcription from RNA polymerase III promoter;0.000111728391074714!GO:0004298;threonine endopeptidase activity;0.000114029784317179!GO:0043069;negative regulation of programmed cell death;0.000114282145259194!GO:0043067;regulation of programmed cell death;0.000117561843272603!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0001189371191271!GO:0045786;negative regulation of progression through cell cycle;0.000124635341919072!GO:0043066;negative regulation of apoptosis;0.000125681582173655!GO:0006350;transcription;0.000144978715734619!GO:0015980;energy derivation by oxidation of organic compounds;0.000151864597725839!GO:0005769;early endosome;0.000153586036645883!GO:0016491;oxidoreductase activity;0.000157617828409228!GO:0000059;protein import into nucleus, docking;0.000157617828409228!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000159861864046232!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000160633349093333!GO:0006352;transcription initiation;0.000161785498628071!GO:0045454;cell redox homeostasis;0.00017156048452204!GO:0046489;phosphoinositide biosynthetic process;0.000175123928386772!GO:0006612;protein targeting to membrane;0.000176019358993222!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000176019358993222!GO:0000428;DNA-directed RNA polymerase complex;0.000176019358993222!GO:0031323;regulation of cellular metabolic process;0.000176315955132902!GO:0003714;transcription corepressor activity;0.000186307506356505!GO:0031324;negative regulation of cellular metabolic process;0.000190896161117569!GO:0006261;DNA-dependent DNA replication;0.000193058876369938!GO:0016859;cis-trans isomerase activity;0.000199631974996263!GO:0006650;glycerophospholipid metabolic process;0.000217430092788288!GO:0006818;hydrogen transport;0.000230558425970316!GO:0022890;inorganic cation transmembrane transporter activity;0.000247357502281212!GO:0016197;endosome transport;0.000247968224522915!GO:0006891;intra-Golgi vesicle-mediated transport;0.000253828332466478!GO:0048519;negative regulation of biological process;0.000266611427826413!GO:0015631;tubulin binding;0.000267669063461222!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000299588977102614!GO:0046467;membrane lipid biosynthetic process;0.000321338401028309!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000337378037945267!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000346946508438573!GO:0015992;proton transport;0.000370917233036095!GO:0006520;amino acid metabolic process;0.000391224817772677!GO:0006839;mitochondrial transport;0.000405896698608069!GO:0003690;double-stranded DNA binding;0.000406880426690821!GO:0016310;phosphorylation;0.000457003383805541!GO:0019867;outer membrane;0.000464656224920491!GO:0030663;COPI coated vesicle membrane;0.000488512010617951!GO:0030126;COPI vesicle coat;0.000488512010617951!GO:0016251;general RNA polymerase II transcription factor activity;0.000495009111317729!GO:0006414;translational elongation;0.000495926443712214!GO:0019899;enzyme binding;0.000497852108625217!GO:0043492;ATPase activity, coupled to movement of substances;0.000503187656790091!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00053671459324725!GO:0042802;identical protein binding;0.000557706430585327!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00055820356378899!GO:0000049;tRNA binding;0.000610972324144699!GO:0030867;rough endoplasmic reticulum membrane;0.000610972324144699!GO:0009892;negative regulation of metabolic process;0.000622470478313098!GO:0033116;ER-Golgi intermediate compartment membrane;0.000622470478313098!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000632269819127017!GO:0043681;protein import into mitochondrion;0.000705001759362796!GO:0031902;late endosome membrane;0.000708661186084643!GO:0031968;organelle outer membrane;0.000712174690994047!GO:0008250;oligosaccharyl transferase complex;0.000723361010893751!GO:0005885;Arp2/3 protein complex;0.000743461636011171!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000774384224661896!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000775377815828151!GO:0044262;cellular carbohydrate metabolic process;0.00080532133567097!GO:0010468;regulation of gene expression;0.000815585825811507!GO:0006402;mRNA catabolic process;0.000815585825811507!GO:0007006;mitochondrial membrane organization and biogenesis;0.000821847482927106!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000830301963350378!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000830301963350378!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000830301963350378!GO:0003682;chromatin binding;0.000898316471549208!GO:0030137;COPI-coated vesicle;0.000948042910528407!GO:0016481;negative regulation of transcription;0.000957528890232071!GO:0016044;membrane organization and biogenesis;0.000987478869883852!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000987478869883852!GO:0051329;interphase of mitotic cell cycle;0.000987478869883852!GO:0003729;mRNA binding;0.00102885970484182!GO:0003746;translation elongation factor activity;0.00106357685297138!GO:0030384;phosphoinositide metabolic process;0.00117924215873704!GO:0004576;oligosaccharyl transferase activity;0.00126178896101867!GO:0006643;membrane lipid metabolic process;0.00127313360523894!GO:0031970;organelle envelope lumen;0.00128700469466324!GO:0005741;mitochondrial outer membrane;0.00129139952608182!GO:0019843;rRNA binding;0.00145169534215916!GO:0006401;RNA catabolic process;0.00153919526270192!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00155199992642825!GO:0019752;carboxylic acid metabolic process;0.00156933059581243!GO:0051920;peroxiredoxin activity;0.00166166647772257!GO:0003678;DNA helicase activity;0.00167138402893242!GO:0007040;lysosome organization and biogenesis;0.00171364056091467!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0017942663499701!GO:0003684;damaged DNA binding;0.00185225290687711!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0019099024407492!GO:0006082;organic acid metabolic process;0.00195366192088227!GO:0030133;transport vesicle;0.00206819596667458!GO:0008022;protein C-terminus binding;0.00216142380433372!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00219010462239981!GO:0006506;GPI anchor biosynthetic process;0.00224901649584726!GO:0030658;transport vesicle membrane;0.00227560118885742!GO:0016363;nuclear matrix;0.00233295220607509!GO:0005874;microtubule;0.00234177648001907!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00234186421591772!GO:0051325;interphase;0.00256318997533736!GO:0005758;mitochondrial intermembrane space;0.00259350626018237!GO:0007034;vacuolar transport;0.00266295112431154!GO:0051789;response to protein stimulus;0.00266295112431154!GO:0006986;response to unfolded protein;0.00266295112431154!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00274185831390759!GO:0006302;double-strand break repair;0.00274652524000103!GO:0006505;GPI anchor metabolic process;0.00276959810517412!GO:0035258;steroid hormone receptor binding;0.00276959810517412!GO:0005819;spindle;0.00276959810517412!GO:0005657;replication fork;0.00283729279579952!GO:0045045;secretory pathway;0.0028581334721588!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00291535062940015!GO:0030036;actin cytoskeleton organization and biogenesis;0.00294643637718606!GO:0033162;melanosome membrane;0.00318580324999105!GO:0045009;chitosome;0.00318580324999105!GO:0006672;ceramide metabolic process;0.00321363741078315!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00325779053918599!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00325779053918599!GO:0007010;cytoskeleton organization and biogenesis;0.0032771288577974!GO:0009451;RNA modification;0.0033263371822216!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00337430131661364!GO:0032774;RNA biosynthetic process;0.00344263604339047!GO:0007033;vacuole organization and biogenesis;0.00348675119229711!GO:0051052;regulation of DNA metabolic process;0.00348675119229711!GO:0030521;androgen receptor signaling pathway;0.00350672917027572!GO:0046519;sphingoid metabolic process;0.00352108016219453!GO:0006405;RNA export from nucleus;0.00362550696308904!GO:0006351;transcription, DNA-dependent;0.0038067516781845!GO:0031072;heat shock protein binding;0.00384887094181949!GO:0045941;positive regulation of transcription;0.00385333962690437!GO:0006497;protein amino acid lipidation;0.00399038267884143!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00399038267884143!GO:0019748;secondary metabolic process;0.00402273326141071!GO:0048066;pigmentation during development;0.00403746050087299!GO:0003702;RNA polymerase II transcription factor activity;0.00416751739177566!GO:0048500;signal recognition particle;0.00426727424459346!GO:0042158;lipoprotein biosynthetic process;0.00428594979215967!GO:0005905;coated pit;0.00443141811991502!GO:0030518;steroid hormone receptor signaling pathway;0.00455040213687673!GO:0005684;U2-dependent spliceosome;0.00468047236389289!GO:0018196;peptidyl-asparagine modification;0.00482806352473022!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00482806352473022!GO:0006509;membrane protein ectodomain proteolysis;0.00491906018791668!GO:0033619;membrane protein proteolysis;0.00491906018791668!GO:0043284;biopolymer biosynthetic process;0.00499709504842195!GO:0046983;protein dimerization activity;0.00503499966521847!GO:0030027;lamellipodium;0.00503499966521847!GO:0008320;protein transmembrane transporter activity;0.00503499966521847!GO:0051087;chaperone binding;0.00519992723930279!GO:0048069;eye pigmentation;0.00523423159241594!GO:0045893;positive regulation of transcription, DNA-dependent;0.00534889891916711!GO:0050662;coenzyme binding;0.00535983772574048!GO:0003711;transcription elongation regulator activity;0.00541955560909418!GO:0008312;7S RNA binding;0.00559411590171228!GO:0006611;protein export from nucleus;0.00562139094803102!GO:0008094;DNA-dependent ATPase activity;0.00590208568839432!GO:0030118;clathrin coat;0.00602401660446545!GO:0007041;lysosomal transport;0.00616100670181836!GO:0016272;prefoldin complex;0.00618994509303312!GO:0006595;polyamine metabolic process;0.0062960075270825!GO:0030660;Golgi-associated vesicle membrane;0.00639142226728108!GO:0048154;S100 beta binding;0.00659594914223838!GO:0008092;cytoskeletal protein binding;0.00666767198754409!GO:0006338;chromatin remodeling;0.00680123684898512!GO:0031497;chromatin assembly;0.00706159045855967!GO:0006334;nucleosome assembly;0.00714823981063961!GO:0043488;regulation of mRNA stability;0.00746865237361586!GO:0043487;regulation of RNA stability;0.00746865237361586!GO:0048487;beta-tubulin binding;0.00825831287103782!GO:0005774;vacuolar membrane;0.00859679080759588!GO:0043022;ribosome binding;0.00894759409357365!GO:0004527;exonuclease activity;0.00897853099791611!GO:0048522;positive regulation of cellular process;0.009027284496441!GO:0065007;biological regulation;0.00921103707710655!GO:0009308;amine metabolic process;0.00930821789814838!GO:0016791;phosphoric monoester hydrolase activity;0.00934287061616218!GO:0005832;chaperonin-containing T-complex;0.0094180440958665!GO:0051252;regulation of RNA metabolic process;0.00965660315791631!GO:0006519;amino acid and derivative metabolic process;0.00980729207680918!GO:0008652;amino acid biosynthetic process;0.00986655398424131!GO:0006807;nitrogen compound metabolic process;0.00988580842061671!GO:0008180;signalosome;0.00988580842061671!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00988580842061671!GO:0015002;heme-copper terminal oxidase activity;0.00988580842061671!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00988580842061671!GO:0004129;cytochrome-c oxidase activity;0.00988580842061671!GO:0004532;exoribonuclease activity;0.00988580842061671!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00988580842061671!GO:0051539;4 iron, 4 sulfur cluster binding;0.0103005631394219!GO:0046483;heterocycle metabolic process;0.0104154382785924!GO:0005669;transcription factor TFIID complex;0.0105713649291121!GO:0031901;early endosome membrane;0.0106956109439031!GO:0000339;RNA cap binding;0.0107745045224527!GO:0006144;purine base metabolic process;0.0107950736771279!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0107950736771279!GO:0045047;protein targeting to ER;0.0107950736771279!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0110522247839542!GO:0016741;transferase activity, transferring one-carbon groups;0.0112727596356551!GO:0008017;microtubule binding;0.0114125468395534!GO:0030134;ER to Golgi transport vesicle;0.0116041281861211!GO:0000209;protein polyubiquitination;0.0121205760571908!GO:0005637;nuclear inner membrane;0.0121205760571908!GO:0048037;cofactor binding;0.0121813933969759!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0122020433209322!GO:0008234;cysteine-type peptidase activity;0.0122336514721975!GO:0050681;androgen receptor binding;0.0123213715939663!GO:0007050;cell cycle arrest;0.0123674698973248!GO:0016311;dephosphorylation;0.0126509029313732!GO:0006400;tRNA modification;0.0126660005018473!GO:0001726;ruffle;0.012697089376171!GO:0005791;rough endoplasmic reticulum;0.0129172099576731!GO:0030176;integral to endoplasmic reticulum membrane;0.0129346868937649!GO:0008168;methyltransferase activity;0.0134229947292827!GO:0048468;cell development;0.0134334404320106!GO:0030029;actin filament-based process;0.0136135093973936!GO:0006417;regulation of translation;0.0136741806773139!GO:0032940;secretion by cell;0.0138477828676325!GO:0043624;cellular protein complex disassembly;0.0138946568705506!GO:0045449;regulation of transcription;0.0138946568705506!GO:0003756;protein disulfide isomerase activity;0.0142669328597723!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0142669328597723!GO:0006007;glucose catabolic process;0.0142925185172615!GO:0006289;nucleotide-excision repair;0.0142958935181449!GO:0006726;eye pigment biosynthetic process;0.0143114659320145!GO:0042441;eye pigment metabolic process;0.0143114659320145!GO:0006378;mRNA polyadenylation;0.0143114659320145!GO:0035267;NuA4 histone acetyltransferase complex;0.0144264600792318!GO:0004674;protein serine/threonine kinase activity;0.0144264600792318!GO:0051287;NAD binding;0.0145915727605563!GO:0032984;macromolecular complex disassembly;0.0146116279470953!GO:0030127;COPII vesicle coat;0.0146452762728765!GO:0012507;ER to Golgi transport vesicle membrane;0.0146452762728765!GO:0006376;mRNA splice site selection;0.0150441205415661!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0150441205415661!GO:0009303;rRNA transcription;0.015172985829021!GO:0000178;exosome (RNase complex);0.0156859095264686!GO:0004518;nuclease activity;0.0158083333455119!GO:0008632;apoptotic program;0.0158083333455119!GO:0008139;nuclear localization sequence binding;0.0161361214560006!GO:0009116;nucleoside metabolic process;0.0161361214560006!GO:0001725;stress fiber;0.0162798744773964!GO:0032432;actin filament bundle;0.0162798744773964!GO:0016860;intramolecular oxidoreductase activity;0.0164642947449193!GO:0007243;protein kinase cascade;0.0164915747385546!GO:0043189;H4/H2A histone acetyltransferase complex;0.0165280797710993!GO:0033673;negative regulation of kinase activity;0.0165973266825858!GO:0006469;negative regulation of protein kinase activity;0.0165973266825858!GO:0001573;ganglioside metabolic process;0.0169202450131694!GO:0045892;negative regulation of transcription, DNA-dependent;0.0173562962041517!GO:0009112;nucleobase metabolic process;0.0173948222619617!GO:0065009;regulation of a molecular function;0.0178058875828294!GO:0007264;small GTPase mediated signal transduction;0.0184145938495299!GO:0006644;phospholipid metabolic process;0.0184636287491488!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0185120972816327!GO:0044437;vacuolar part;0.0189636594605438!GO:0030522;intracellular receptor-mediated signaling pathway;0.0191720716145787!GO:0031529;ruffle organization and biogenesis;0.0191833530997759!GO:0006607;NLS-bearing substrate import into nucleus;0.0199674151542499!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0200942034149192!GO:0008361;regulation of cell size;0.0207085436039146!GO:0030119;AP-type membrane coat adaptor complex;0.0208485126123317!GO:0006740;NADPH regeneration;0.0209693630767969!GO:0006098;pentose-phosphate shunt;0.0209693630767969!GO:0006310;DNA recombination;0.0216154833574745!GO:0003677;DNA binding;0.0217746409221078!GO:0008408;3'-5' exonuclease activity;0.0221366745659086!GO:0007017;microtubule-based process;0.0224650834547287!GO:0031301;integral to organelle membrane;0.0225087472108613!GO:0004721;phosphoprotein phosphatase activity;0.0228904272560352!GO:0000287;magnesium ion binding;0.0241962900198564!GO:0051348;negative regulation of transferase activity;0.0241962900198564!GO:0018202;peptidyl-histidine modification;0.0242451908886679!GO:0000075;cell cycle checkpoint;0.0242899423033042!GO:0005996;monosaccharide metabolic process;0.0242899423033042!GO:0006360;transcription from RNA polymerase I promoter;0.0246139005022056!GO:0030131;clathrin adaptor complex;0.0251663590213871!GO:0043241;protein complex disassembly;0.0258369073514594!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0261867194877979!GO:0051540;metal cluster binding;0.0269130868587775!GO:0051536;iron-sulfur cluster binding;0.0269130868587775!GO:0000123;histone acetyltransferase complex;0.0269285969048975!GO:0031124;mRNA 3'-end processing;0.0271206922393216!GO:0006582;melanin metabolic process;0.0273389065174484!GO:0006583;melanin biosynthetic process from tyrosine;0.0273389065174484!GO:0042438;melanin biosynthetic process;0.0273389065174484!GO:0022406;membrane docking;0.0278792666071863!GO:0048278;vesicle docking;0.0278792666071863!GO:0007030;Golgi organization and biogenesis;0.0279200084095389!GO:0022884;macromolecule transmembrane transporter activity;0.0279808335815674!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0279808335815674!GO:0016584;nucleosome positioning;0.0290464156804735!GO:0019318;hexose metabolic process;0.0298361469136827!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0298733509805734!GO:0007051;spindle organization and biogenesis;0.0303411939850408!GO:0006984;ER-nuclear signaling pathway;0.0305291420038881!GO:0000096;sulfur amino acid metabolic process;0.0305291420038881!GO:0031326;regulation of cellular biosynthetic process;0.0305903681697989!GO:0008097;5S rRNA binding;0.0306504085524623!GO:0030503;regulation of cell redox homeostasis;0.0306985112378657!GO:0006778;porphyrin metabolic process;0.0307122162107219!GO:0033013;tetrapyrrole metabolic process;0.0307122162107219!GO:0031647;regulation of protein stability;0.0315696605477166!GO:0007569;cell aging;0.0320637350436455!GO:0006892;post-Golgi vesicle-mediated transport;0.0322656718946958!GO:0004300;enoyl-CoA hydratase activity;0.0323700245733887!GO:0031371;ubiquitin conjugating enzyme complex;0.0323700245733887!GO:0005765;lysosomal membrane;0.0326621906193496!GO:0030433;ER-associated protein catabolic process;0.0326822336870326!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0326822336870326!GO:0008610;lipid biosynthetic process;0.0332952689021256!GO:0030508;thiol-disulfide exchange intermediate activity;0.0337254457682891!GO:0019783;small conjugating protein-specific protease activity;0.0339409693200943!GO:0006904;vesicle docking during exocytosis;0.0340730106800908!GO:0006275;regulation of DNA replication;0.0342409398655076!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0343761210948092!GO:0010257;NADH dehydrogenase complex assembly;0.0343761210948092!GO:0033108;mitochondrial respiratory chain complex assembly;0.0343761210948092!GO:0032200;telomere organization and biogenesis;0.0344039716596888!GO:0000723;telomere maintenance;0.0344039716596888!GO:0016049;cell growth;0.0344628713368449!GO:0022411;cellular component disassembly;0.0345725353527602!GO:0006564;L-serine biosynthetic process;0.0350537566037167!GO:0006470;protein amino acid dephosphorylation;0.0350753266637564!GO:0006284;base-excision repair;0.0352162310116385!GO:0001711;endodermal cell fate commitment;0.0356569668476939!GO:0030858;positive regulation of epithelial cell differentiation;0.0356569668476939!GO:0031528;microvillus membrane;0.0356569668476939!GO:0001706;endoderm formation;0.0356569668476939!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0372446461420824!GO:0006220;pyrimidine nucleotide metabolic process;0.0375870427842448!GO:0003923;GPI-anchor transamidase activity;0.0375870427842448!GO:0016255;attachment of GPI anchor to protein;0.0375870427842448!GO:0042765;GPI-anchor transamidase complex;0.0375870427842448!GO:0030140;trans-Golgi network transport vesicle;0.0375870427842448!GO:0004003;ATP-dependent DNA helicase activity;0.0376805754091453!GO:0004680;casein kinase activity;0.0380968085619368!GO:0050178;phenylpyruvate tautomerase activity;0.0381499177879268!GO:0030911;TPR domain binding;0.0389421688845981!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0393153055053326!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0399546718626809!GO:0004563;beta-N-acetylhexosaminidase activity;0.0418467662110302!GO:0009081;branched chain family amino acid metabolic process;0.0420683147205678!GO:0004843;ubiquitin-specific protease activity;0.0423698907264435!GO:0008287;protein serine/threonine phosphatase complex;0.0429947349852676!GO:0001558;regulation of cell growth;0.0430522153864084!GO:0035035;histone acetyltransferase binding;0.0442900163732712!GO:0030125;clathrin vesicle coat;0.044402947276781!GO:0030665;clathrin coated vesicle membrane;0.044402947276781!GO:0004185;serine carboxypeptidase activity;0.0449853409409165!GO:0006621;protein retention in ER;0.0452693485384785!GO:0004448;isocitrate dehydrogenase activity;0.0455338526630107!GO:0032508;DNA duplex unwinding;0.0458560559527228!GO:0032392;DNA geometric change;0.0458560559527228!GO:0050811;GABA receptor binding;0.0463907552719229!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0463907552719229!GO:0031123;RNA 3'-end processing;0.046684298370131!GO:0000910;cytokinesis;0.0469884001002119!GO:0042168;heme metabolic process;0.047075546792208!GO:0046966;thyroid hormone receptor binding;0.047075546792208!GO:0016788;hydrolase activity, acting on ester bonds;0.0474463157550534!GO:0043407;negative regulation of MAP kinase activity;0.0480308135465294!GO:0000175;3'-5'-exoribonuclease activity;0.04896150762489!GO:0007021;tubulin folding;0.04896150762489!GO:0006355;regulation of transcription, DNA-dependent;0.0498242345185485!GO:0016408;C-acyltransferase activity;0.0498242345185485 | |||
|sample_id=10465 | |sample_id=10465 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.37343224293;HOX{A6,A7,B6,B7}:2.07078847256;bHLH_family:1.83142634605;HOX{A4,D4}:1.67922931482;ZNF423:1.61210134318;ESRRA:1.33097013593;NANOG:1.19540130996;ELK1,4_GABP{A,B1}:1.15393264956;TFDP1:1.11401288493;TEF:1.08630948295;AHR_ARNT_ARNT2:1.06009416828;NR5A1,2:0.87978996267;NR3C1:0.851626391476;EVI1:0.811499633779;PAX4:0.809357264858;PAX6:0.779901047559;PAX5:0.775168998992;IKZF2:0.748458850681;FOX{I1,J2}:0.724547190481;PAX8:0.711561981703;TOPORS:0.70646114372;LHX3,4:0.701910992109;EN1,2:0.686538216479;FOXA2:0.673492599128;ONECUT1,2:0.659621245399;BPTF:0.65838667035;HES1:0.639362705753;CRX:0.613138815547;NKX6-1,2:0.585851009645;RBPJ:0.580448376198;FOXL1:0.570756791517;UFEwm:0.560625598742;BREu{core}:0.539024356857;GFI1:0.499737531923;NKX2-1,4:0.495635456344;YY1:0.490088860515;EGR1..3:0.488524462073;XCPE1{core}:0.484661062084;AIRE:0.475836587301;HIF1A:0.44460519506;FOXQ1:0.440025607545;XBP1:0.43628338353;SREBF1,2:0.426850987031;ARID5B:0.420533378455;ZBTB6:0.414063662812;CDC5L:0.41331394336;SOX5:0.399084224329;ZNF143:0.397067611714;ZIC1..3:0.392328555777;NFIX:0.380260947869;ZNF384:0.368394826854;GATA4:0.361823214139;ZBTB16:0.352123705199;RREB1:0.322282797668;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.322159922596;SOX2:0.317347074086;CUX2:0.305920937585;PBX1:0.304542522781;HOXA9_MEIS1:0.300757830805;ATF4:0.289335840619;POU3F1..4:0.263877234771;ALX4:0.248553282209;RFX2..5_RFXANK_RFXAP:0.244361134229;NFE2L1:0.23869967615;NRF1:0.205891405906;ZFP161:0.188310155416;FOXP1:0.184966374706;LMO2:0.178551968718;HBP1_HMGB_SSRP1_UBTF:0.177060741193;TLX2:0.172097713652;FOX{D1,D2}:0.167443151863;RXR{A,B,G}:0.153265228635;CEBPA,B_DDIT3:0.127273046207;NKX3-1:0.121304622505;JUN:0.113912425434;PITX1..3:0.110517672369;FOXM1:0.0933226441596;RFX1:0.0902209953717;FOXD3:0.0893729261184;POU6F1:0.0739355336445;TFAP2B:0.0535267729241;TP53:0.0489144937688;REST:0.0417778958411;SOX17:0.0416673185796;DMAP1_NCOR{1,2}_SMARC:0.0391526979801;SOX{8,9,10}:0.0344597520202;OCT4_SOX2{dimer}:0.00809503481572;MED-1{core}:0.0057088793824;HNF4A_NR2F1,2:-0.0141181341825;PRRX1,2:-0.0155250726612;HIC1:-0.0261675821164;SP1:-0.03692440747;NFIL3:-0.0465668881814;DBP:-0.0685506718946;HOX{A5,B5}:-0.0707706630713;ELF1,2,4:-0.0762776928855;ATF5_CREB3:-0.0857778062581;CREB1:-0.087254138897;HAND1,2:-0.0891361513971;PAX2:-0.0898647122325;TBX4,5:-0.0962906257528;PAX3,7:-0.0966745464897;NKX2-2,8:-0.112557374682;BACH2:-0.134552722684;FOX{F1,F2,J1}:-0.140664391984;TLX1..3_NFIC{dimer}:-0.150635581635;NHLH1,2:-0.168323124818;STAT5{A,B}:-0.178161637186;NFY{A,B,C}:-0.179268588627;NKX2-3_NKX2-5:-0.181403833905;PATZ1:-0.189259956966;LEF1_TCF7_TCF7L1,2:-0.192796357291;ATF6:-0.207276538714;RUNX1..3:-0.209219329408;E2F1..5:-0.209538492195;SPIB:-0.213669240876;MTE{core}:-0.222457505029;ALX1:-0.229280976763;GTF2A1,2:-0.229674011822;STAT2,4,6:-0.244264621557;TEAD1:-0.245307341989;HNF1A:-0.25191302868;MYFfamily:-0.260547838726;KLF4:-0.26073906378;ADNP_IRX_SIX_ZHX:-0.260900479361;FOSL2:-0.277137195627;ESR1:-0.280757083363;MYOD1:-0.289017718177;ATF2:-0.291468740964;MYB:-0.303842083126;STAT1,3:-0.310090084686;GFI1B:-0.314260968484;NFE2:-0.320497245344;POU1F1:-0.323235070105;IKZF1:-0.347124438975;TFCP2:-0.348224954548;GTF2I:-0.34951676638;SPI1:-0.356080479078;TFAP2{A,C}:-0.362567797914;GZF1:-0.369054878871;FOS_FOS{B,L1}_JUN{B,D}:-0.37276748549;FOXP3:-0.377573351126;MTF1:-0.378214740736;HLF:-0.396637125141;NANOG{mouse}:-0.401262953764;PRDM1:-0.413315049475;SNAI1..3:-0.436157733919;PDX1:-0.43977424497;FOXN1:-0.444000668276;MEF2{A,B,C,D}:-0.467622265195;MAZ:-0.479381306435;EBF1:-0.486054571611;HSF1,2:-0.497757689986;IRF1,2:-0.510416570901;NKX3-2:-0.517919520746;PAX1,9:-0.519602901645;NFKB1_REL_RELA:-0.551777836184;FOXO1,3,4:-0.559729812327;IRF7:-0.560603199109;ETS1,2:-0.621825434445;NFE2L2:-0.633540963746;MAFB:-0.639115166042;ZNF148:-0.642865143607;HMGA1,2:-0.649297368287;MYBL2:-0.654633008869;ZNF238:-0.686006920323;CDX1,2,4:-0.686484769213;AR:-0.689295109735;NR6A1:-0.6993666323;NFATC1..3:-0.706212799309;GLI1..3:-0.753716774728;MZF1:-0.754828556065;POU2F1..3:-0.771512878535;RORA:-0.791077542574;VSX1,2:-0.823682208658;ZEB1:-0.851424597417;GCM1,2:-0.86554080268;GATA6:-0.867578165017;NR1H4:-0.938371033524;PPARG:-1.00064126417;RXRA_VDR{dimer}:-1.00939420351;TBP:-1.02977817456;T:-1.04156340259;HMX1:-1.05300652565;EP300:-1.07559579087;TAL1_TCF{3,4,12}:-1.15632132015;SMAD1..7,9:-1.2091204792;SPZ1:-1.22962313447;SRF:-1.27667213936;POU5F1:-1.38627104941;TGIF1:-1.42694983107;TFAP4:-1.627150752 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.37343224293;HOX{A6,A7,B6,B7}:2.07078847256;bHLH_family:1.83142634605;HOX{A4,D4}:1.67922931482;ZNF423:1.61210134318;ESRRA:1.33097013593;NANOG:1.19540130996;ELK1,4_GABP{A,B1}:1.15393264956;TFDP1:1.11401288493;TEF:1.08630948295;AHR_ARNT_ARNT2:1.06009416828;NR5A1,2:0.87978996267;NR3C1:0.851626391476;EVI1:0.811499633779;PAX4:0.809357264858;PAX6:0.779901047559;PAX5:0.775168998992;IKZF2:0.748458850681;FOX{I1,J2}:0.724547190481;PAX8:0.711561981703;TOPORS:0.70646114372;LHX3,4:0.701910992109;EN1,2:0.686538216479;FOXA2:0.673492599128;ONECUT1,2:0.659621245399;BPTF:0.65838667035;HES1:0.639362705753;CRX:0.613138815547;NKX6-1,2:0.585851009645;RBPJ:0.580448376198;FOXL1:0.570756791517;UFEwm:0.560625598742;BREu{core}:0.539024356857;GFI1:0.499737531923;NKX2-1,4:0.495635456344;YY1:0.490088860515;EGR1..3:0.488524462073;XCPE1{core}:0.484661062084;AIRE:0.475836587301;HIF1A:0.44460519506;FOXQ1:0.440025607545;XBP1:0.43628338353;SREBF1,2:0.426850987031;ARID5B:0.420533378455;ZBTB6:0.414063662812;CDC5L:0.41331394336;SOX5:0.399084224329;ZNF143:0.397067611714;ZIC1..3:0.392328555777;NFIX:0.380260947869;ZNF384:0.368394826854;GATA4:0.361823214139;ZBTB16:0.352123705199;RREB1:0.322282797668;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.322159922596;SOX2:0.317347074086;CUX2:0.305920937585;PBX1:0.304542522781;HOXA9_MEIS1:0.300757830805;ATF4:0.289335840619;POU3F1..4:0.263877234771;ALX4:0.248553282209;RFX2..5_RFXANK_RFXAP:0.244361134229;NFE2L1:0.23869967615;NRF1:0.205891405906;ZFP161:0.188310155416;FOXP1:0.184966374706;LMO2:0.178551968718;HBP1_HMGB_SSRP1_UBTF:0.177060741193;TLX2:0.172097713652;FOX{D1,D2}:0.167443151863;RXR{A,B,G}:0.153265228635;CEBPA,B_DDIT3:0.127273046207;NKX3-1:0.121304622505;JUN:0.113912425434;PITX1..3:0.110517672369;FOXM1:0.0933226441596;RFX1:0.0902209953717;FOXD3:0.0893729261184;POU6F1:0.0739355336445;TFAP2B:0.0535267729241;TP53:0.0489144937688;REST:0.0417778958411;SOX17:0.0416673185796;DMAP1_NCOR{1,2}_SMARC:0.0391526979801;SOX{8,9,10}:0.0344597520202;OCT4_SOX2{dimer}:0.00809503481572;MED-1{core}:0.0057088793824;HNF4A_NR2F1,2:-0.0141181341825;PRRX1,2:-0.0155250726612;HIC1:-0.0261675821164;SP1:-0.03692440747;NFIL3:-0.0465668881814;DBP:-0.0685506718946;HOX{A5,B5}:-0.0707706630713;ELF1,2,4:-0.0762776928855;ATF5_CREB3:-0.0857778062581;CREB1:-0.087254138897;HAND1,2:-0.0891361513971;PAX2:-0.0898647122325;TBX4,5:-0.0962906257528;PAX3,7:-0.0966745464897;NKX2-2,8:-0.112557374682;BACH2:-0.134552722684;FOX{F1,F2,J1}:-0.140664391984;TLX1..3_NFIC{dimer}:-0.150635581635;NHLH1,2:-0.168323124818;STAT5{A,B}:-0.178161637186;NFY{A,B,C}:-0.179268588627;NKX2-3_NKX2-5:-0.181403833905;PATZ1:-0.189259956966;LEF1_TCF7_TCF7L1,2:-0.192796357291;ATF6:-0.207276538714;RUNX1..3:-0.209219329408;E2F1..5:-0.209538492195;SPIB:-0.213669240876;MTE{core}:-0.222457505029;ALX1:-0.229280976763;GTF2A1,2:-0.229674011822;STAT2,4,6:-0.244264621557;TEAD1:-0.245307341989;HNF1A:-0.25191302868;MYFfamily:-0.260547838726;KLF4:-0.26073906378;ADNP_IRX_SIX_ZHX:-0.260900479361;FOSL2:-0.277137195627;ESR1:-0.280757083363;MYOD1:-0.289017718177;ATF2:-0.291468740964;MYB:-0.303842083126;STAT1,3:-0.310090084686;GFI1B:-0.314260968484;NFE2:-0.320497245344;POU1F1:-0.323235070105;IKZF1:-0.347124438975;TFCP2:-0.348224954548;GTF2I:-0.34951676638;SPI1:-0.356080479078;TFAP2{A,C}:-0.362567797914;GZF1:-0.369054878871;FOS_FOS{B,L1}_JUN{B,D}:-0.37276748549;FOXP3:-0.377573351126;MTF1:-0.378214740736;HLF:-0.396637125141;NANOG{mouse}:-0.401262953764;PRDM1:-0.413315049475;SNAI1..3:-0.436157733919;PDX1:-0.43977424497;FOXN1:-0.444000668276;MEF2{A,B,C,D}:-0.467622265195;MAZ:-0.479381306435;EBF1:-0.486054571611;HSF1,2:-0.497757689986;IRF1,2:-0.510416570901;NKX3-2:-0.517919520746;PAX1,9:-0.519602901645;NFKB1_REL_RELA:-0.551777836184;FOXO1,3,4:-0.559729812327;IRF7:-0.560603199109;ETS1,2:-0.621825434445;NFE2L2:-0.633540963746;MAFB:-0.639115166042;ZNF148:-0.642865143607;HMGA1,2:-0.649297368287;MYBL2:-0.654633008869;ZNF238:-0.686006920323;CDX1,2,4:-0.686484769213;AR:-0.689295109735;NR6A1:-0.6993666323;NFATC1..3:-0.706212799309;GLI1..3:-0.753716774728;MZF1:-0.754828556065;POU2F1..3:-0.771512878535;RORA:-0.791077542574;VSX1,2:-0.823682208658;ZEB1:-0.851424597417;GCM1,2:-0.86554080268;GATA6:-0.867578165017;NR1H4:-0.938371033524;PPARG:-1.00064126417;RXRA_VDR{dimer}:-1.00939420351;TBP:-1.02977817456;T:-1.04156340259;HMX1:-1.05300652565;EP300:-1.07559579087;TAL1_TCF{3,4,12}:-1.15632132015;SMAD1..7,9:-1.2091204792;SPZ1:-1.22962313447;SRF:-1.27667213936;POU5F1:-1.38627104941;TGIF1:-1.42694983107;TFAP4:-1.627150752 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10465-106H6;search_select_hide=table117:FF:10465-106H6 | |||
}} | }} | ||
Latest revision as of 14:25, 3 June 2020
| Name: | melanoma cell line:G-361 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11254 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11254
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11254
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.929 |
| 10 | 10 | 0.922 |
| 100 | 100 | 0.546 |
| 101 | 101 | 0.854 |
| 102 | 102 | 0.233 |
| 103 | 103 | 0.974 |
| 104 | 104 | 0.311 |
| 105 | 105 | 0.0668 |
| 106 | 106 | 0.0641 |
| 107 | 107 | 0.093 |
| 108 | 108 | 0.228 |
| 109 | 109 | 0.772 |
| 11 | 11 | 0.551 |
| 110 | 110 | 0.594 |
| 111 | 111 | 0.919 |
| 112 | 112 | 0.94 |
| 113 | 113 | 0.0754 |
| 114 | 114 | 0.489 |
| 115 | 115 | 0.822 |
| 116 | 116 | 0.649 |
| 117 | 117 | 0.833 |
| 118 | 118 | 0.325 |
| 119 | 119 | 0.214 |
| 12 | 12 | 0.0858 |
| 120 | 120 | 0.672 |
| 121 | 121 | 0.0954 |
| 122 | 122 | 0.999 |
| 123 | 123 | 0.483 |
| 124 | 124 | 0.743 |
| 125 | 125 | 0.927 |
| 126 | 126 | 0.759 |
| 127 | 127 | 0.193 |
| 128 | 128 | 0.743 |
| 129 | 129 | 0.267 |
| 13 | 13 | 0.619 |
| 130 | 130 | 0.54 |
| 131 | 131 | 0.0208 |
| 132 | 132 | 0.984 |
| 133 | 133 | 0.591 |
| 134 | 134 | 0.474 |
| 135 | 135 | 0.118 |
| 136 | 136 | 0.0102 |
| 137 | 137 | 0.582 |
| 138 | 138 | 0.773 |
| 139 | 139 | 0.558 |
| 14 | 14 | 0.605 |
| 140 | 140 | 0.182 |
| 141 | 141 | 0.393 |
| 142 | 142 | 0.0934 |
| 143 | 143 | 0.865 |
| 144 | 144 | 0.868 |
| 145 | 145 | 0.42 |
| 146 | 146 | 0.333 |
| 147 | 147 | 0.847 |
| 148 | 148 | 0.5 |
| 149 | 149 | 0.178 |
| 15 | 15 | 0.91 |
| 150 | 150 | 0.767 |
| 151 | 151 | 0.574 |
| 152 | 152 | 0.117 |
| 153 | 153 | 0.853 |
| 154 | 154 | 0.799 |
| 155 | 155 | 0.345 |
| 156 | 156 | 0.518 |
| 157 | 157 | 0.992 |
| 158 | 158 | 0.245 |
| 159 | 159 | 0.236 |
| 16 | 16 | 0.894 |
| 160 | 160 | 0.174 |
| 161 | 161 | 0.337 |
| 162 | 162 | 0.535 |
| 163 | 163 | 0.406 |
| 164 | 164 | 0.787 |
| 165 | 165 | 0.087 |
| 166 | 166 | 0.213 |
| 167 | 167 | 0.0229 |
| 168 | 168 | 0.743 |
| 169 | 169 | 0.0604 |
| 17 | 17 | 0.658 |
| 18 | 18 | 0.442 |
| 19 | 19 | 0.112 |
| 2 | 2 | 0.0274 |
| 20 | 20 | 0.0646 |
| 21 | 21 | 0.65 |
| 22 | 22 | 0.419 |
| 23 | 23 | 0.0888 |
| 24 | 24 | 0.837 |
| 25 | 25 | 0.159 |
| 26 | 26 | 0.85 |
| 27 | 27 | 0.193 |
| 28 | 28 | 0.859 |
| 29 | 29 | 0.478 |
| 3 | 3 | 0.817 |
| 30 | 30 | 0.103 |
| 31 | 31 | 0.42 |
| 32 | 32 | 0.0166 |
| 33 | 33 | 0.925 |
| 34 | 34 | 0.24 |
| 35 | 35 | 0.952 |
| 36 | 36 | 0.632 |
| 37 | 37 | 0.59 |
| 38 | 38 | 0.427 |
| 39 | 39 | 0.936 |
| 4 | 4 | 0.802 |
| 40 | 40 | 0.175 |
| 41 | 41 | 0.194 |
| 42 | 42 | 0.52 |
| 43 | 43 | 0.256 |
| 44 | 44 | 0.399 |
| 45 | 45 | 0.0978 |
| 46 | 46 | 0.448 |
| 47 | 47 | 0.839 |
| 48 | 48 | 0.778 |
| 49 | 49 | 0.365 |
| 5 | 5 | 0.334 |
| 50 | 50 | 0.399 |
| 51 | 51 | 0.39 |
| 52 | 52 | 0.0796 |
| 53 | 53 | 0.433 |
| 54 | 54 | 0.672 |
| 55 | 55 | 0.987 |
| 56 | 56 | 0.525 |
| 57 | 57 | 0.235 |
| 58 | 58 | 0.068 |
| 59 | 59 | 0.167 |
| 6 | 6 | 0.171 |
| 60 | 60 | 0.0643 |
| 61 | 61 | 0.432 |
| 62 | 62 | 0.0633 |
| 63 | 63 | 0.679 |
| 64 | 64 | 0.95 |
| 65 | 65 | 0.258 |
| 66 | 66 | 0.219 |
| 67 | 67 | 0.575 |
| 68 | 68 | 0.439 |
| 69 | 69 | 0.956 |
| 7 | 7 | 0.293 |
| 70 | 70 | 0.865 |
| 71 | 71 | 0.721 |
| 72 | 72 | 0.362 |
| 73 | 73 | 0.408 |
| 74 | 74 | 0.916 |
| 75 | 75 | 0.553 |
| 76 | 76 | 0.267 |
| 77 | 77 | 0.0854 |
| 78 | 78 | 0.266 |
| 79 | 79 | 0.407 |
| 8 | 8 | 0.809 |
| 80 | 80 | 0.0457 |
| 81 | 81 | 0.717 |
| 82 | 82 | 0.596 |
| 83 | 83 | 0.974 |
| 84 | 84 | 0.0396 |
| 85 | 85 | 0.317 |
| 86 | 86 | 0.131 |
| 87 | 87 | 0.492 |
| 88 | 88 | 0.456 |
| 89 | 89 | 0.0193 |
| 9 | 9 | 0.262 |
| 90 | 90 | 0.171 |
| 91 | 91 | 0.484 |
| 92 | 92 | 0.173 |
| 93 | 93 | 0.203 |
| 94 | 94 | 0.781 |
| 95 | 95 | 0.735 |
| 96 | 96 | 0.17 |
| 97 | 97 | 0.732 |
| 98 | 98 | 0.964 |
| 99 | 99 | 0.899 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11254
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101584 G-361 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1909 (melanoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100849 (melanoma cell line sample)
0101584 (G-361 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
