FFCP PHASE1:Hg19::chr18:2655692..2655733,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:2655692..2655733,+
|short_description=p1@SMCHD1
|description=CAGE_peak_1_at_SMCHD1_5end
|association_with_transcript=-152bp_to_ENST00000261598,ENST0000032...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23347 | |EntrezGene=23347 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29090 | |HGNC=29090 | ||
|TSSclassifier=strong | |||
|UniProt=A6NHR9 | |UniProt=A6NHR9 | ||
|association_with_transcript=-152bp_to_ENST00000261598,ENST00000320876,NM_015295,uc002klm.3_5end | |||
|cluster_id=chr18:2655692..2655733,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_SMCHD1_5end | |||
|id=chr18:2655692..2655733,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.71e-51!172;CL:0000566!3.71e-51!172;CL:0002032!1.54e-47!165;CL:0000837!1.54e-47!165;CL:0000738!3.14e-45!140;CL:0000988!2.43e-42!182;CL:0002031!2.45e-36!124;CL:0002087!3.25e-36!119;CL:0000763!1.28e-26!112;CL:0000049!1.28e-26!112;CL:0002057!6.47e-22!42;CL:0000766!1.45e-20!76;CL:0000860!1.75e-20!45;CL:0000542!5.40e-19!53;CL:0000051!5.40e-19!53;CL:0000838!9.83e-19!52;CL:0000557!2.45e-17!71;CL:0000839!1.09e-16!70;CL:0002009!5.41e-16!65;CL:0002194!2.23e-15!63;CL:0000576!2.23e-15!63;CL:0000040!2.23e-15!63;CL:0000559!2.23e-15!63;CL:0000791!1.80e-10!18;CL:0000789!1.80e-10!18;CL:0002420!1.80e-10!18;CL:0002419!1.80e-10!18;CL:0000790!1.80e-10!18;CL:0000084!7.61e-10!25;CL:0000827!7.61e-10!25;CL:0000945!1.30e-08!24;CL:0000826!1.30e-08!24;CL:0000236!4.77e-08!14;CL:0000134!3.14e-07!358;CL:0000625!3.49e-07!11;CL:0000219!6.75e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.33e-16;33!CL:0002057;3.33e-16;33!CL:0000576;2.52e-14;48!CL:0002087;7.00e-13;104!CL:0000542;1.71e-11;53!CL:0000473;5.52e-11;39!CL:0000234;5.52e-11;39!CL:0000791;1.94e-10;18!CL:0000789;1.94e-10;18!CL:0002419;1.94e-10;18!CL:0000766;2.10e-10;69!CL:0000738;5.53e-10;136!CL:0000084;8.90e-10;25!CL:0000763;7.63e-09;100!CL:0000945;1.27e-08;24!CL:0000988;4.85e-08;177!CL:0000236;7.49e-08;13!CL:0000625;3.45e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.40e-52,168;CL:0002032,6.20e-49,161;CL:0000837,6.20e-49,161;CL:0000738,8.34e-47,136;CL:0000988,2.31e-44,177;CL:0002031,8.29e-38,120;CL:0002087,9.69e-38,115;CL:0000763,7.41e-28,108;CL:0000049,7.41e-28,108;CL:0000766,5.59e-22,72;CL:0000860,6.47e-22,42;CL:0002057,6.47e-22,42;CL:0000542,5.40e-19,53;CL:0000051,5.40e-19,53;CL:0000838,9.83e-19,52;CL:0000557,1.25e-18,67;CL:0000473,5.10e-18,48;CL:0000234,5.10e-18,48;CL:0000839,5.93e-18,66;CL:0002009,2.71e-17,61;CL:0002194,1.14e-16,59;CL:0000576,1.14e-16,59;CL:0000040,1.14e-16,59;CL:0000559,1.14e-16,59;CL:0000791,1.80e-10,18;CL:0000789,1.80e-10,18;CL:0002420,1.80e-10,18;CL:0002419,1.80e-10,18;CL:0000790,1.80e-10,18;CL:0000084,7.61e-10,25;CL:0000827,7.61e-10,25;CL:0000945,1.30e-08,24;CL:0000826,1.30e-08,24;CL:0000236,4.77e-08,14;CL:0000134,1.66e-07,354;CL:0000625,3.49e-07,11;CL:0000219,3.73e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;5.40e-16;42!CL:0000051;1.71e-11;53!CL:0000790;1.94e-10;18!CL:0000049;2.70e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.61e-19!102;UBERON:0003061!2.61e-19!102;UBERON:0002193!1.08e-15!112;UBERON:0002371!7.15e-13!80;UBERON:0001474!1.36e-12!86;UBERON:0002405!1.53e-09!115;UBERON:0004765!3.80e-09!101;UBERON:0001434!3.80e-09!101;UBERON:0007023!4.14e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.47e-20,98;UBERON:0003061,2.47e-20,98;UBERON:0002193,1.76e-16,108;UBERON:0002371,9.23e-14,76;UBERON:0001474,2.07e-13,82;UBERON:0002405,3.44e-12,93;UBERON:0004765,1.26e-09,90;UBERON:0001434,9.17e-09,100;UBERON:0007023,4.71e-07,114 | |||
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| ||
|short_description=p1@SMCHD1 | |||
}} | }} |
Latest revision as of 03:37, 19 September 2015
Short description: | p1@SMCHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMCHD1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -152bp_to_ENST00000261598, ENST00000320876, NM_015295, uc002klm.3_5end |
EntrezGene: | SMCHD1 |
HGNC: | 29090 |
UniProt: | A6NHR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.47e-20 | 98 |
blood island | 2.47e-20 | 98 |
hemolymphoid system | 1.76e-16 | 108 |
bone marrow | 9.23e-14 | 76 |
bone element | 2.07e-13 | 82 |
immune system | 3.44e-12 | 93 |
skeletal element | 1.26e-09 | 90 |
skeletal system | 9.17e-09 | 100 |
adult organism | 4.71e-07 | 114 |