FFCP PHASE1:Hg19::chr2:65216462..65216567,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6509 | |EntrezGene=6509 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10942 | |HGNC=10942 | ||
|TSSclassifier=strong | |||
|UniProt=P43007,E1B6X0 | |UniProt=P43007,E1B6X0 | ||
|association_with_transcript=0bp_to_ENST00000234256,ENST00000448784,NM_003038_5end | |association_with_transcript=0bp_to_ENST00000234256,ENST00000448784,NM_003038_5end | ||
|cluster_id=chr2:65216462..65216567,+ | |||
|coexpression_cluster_id=C88 | |coexpression_cluster_id=C88 | ||
|description=CAGE_peak_1_at_SLC1A4_5end | |description=CAGE_peak_1_at_SLC1A4_5end | ||
|id=chr2:65216462..65216567,+ | |id=chr2:65216462..65216567,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.56e-13!57;UBERON:0005068!1.56e-13!57;UBERON:0006241!1.56e-13!57;UBERON:0007135!1.56e-13!57;UBERON:0003080!7.49e-13!42;UBERON:0002780!7.66e-13!41;UBERON:0001890!7.66e-13!41;UBERON:0006240!7.66e-13!41;UBERON:0002020!1.11e-12!34;UBERON:0003528!1.11e-12!34;UBERON:0001893!2.76e-12!34;UBERON:0001869!4.30e-12!32;UBERON:0002791!6.75e-12!33;UBERON:0002616!2.26e-10!59;UBERON:0002619!2.48e-10!22;UBERON:0000955!3.62e-10!69;UBERON:0006238!3.62e-10!69;UBERON:0001950!2.54e-09!20;UBERON:0000956!3.50e-09!25;UBERON:0000203!3.50e-09!25;UBERON:0001017!9.93e-09!82;UBERON:0003056!1.11e-08!61;UBERON:0000073!2.50e-08!94;UBERON:0001016!2.50e-08!94;UBERON:0003075!3.32e-08!86;UBERON:0007284!3.32e-08!86;UBERON:0002346!4.43e-08!90;UBERON:0005743!6.40e-08!86 | |ontology_enrichment_uberon=UBERON:0001049!1.56e-13!57;UBERON:0005068!1.56e-13!57;UBERON:0006241!1.56e-13!57;UBERON:0007135!1.56e-13!57;UBERON:0003080!7.49e-13!42;UBERON:0002780!7.66e-13!41;UBERON:0001890!7.66e-13!41;UBERON:0006240!7.66e-13!41;UBERON:0002020!1.11e-12!34;UBERON:0003528!1.11e-12!34;UBERON:0001893!2.76e-12!34;UBERON:0001869!4.30e-12!32;UBERON:0002791!6.75e-12!33;UBERON:0002616!2.26e-10!59;UBERON:0002619!2.48e-10!22;UBERON:0000955!3.62e-10!69;UBERON:0006238!3.62e-10!69;UBERON:0001950!2.54e-09!20;UBERON:0000956!3.50e-09!25;UBERON:0000203!3.50e-09!25;UBERON:0001017!9.93e-09!82;UBERON:0003056!1.11e-08!61;UBERON:0000073!2.50e-08!94;UBERON:0001016!2.50e-08!94;UBERON:0003075!3.32e-08!86;UBERON:0007284!3.32e-08!86;UBERON:0002346!4.43e-08!90;UBERON:0005743!6.40e-08!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;5.95e-11;34!UBERON:0002020;5.95e-11;34!UBERON:0001869;6.38e-11;32!UBERON:0002791;9.73e-11;32!UBERON:0001893;1.32e-10;34!UBERON:0002619;2.51e-10;22!UBERON:0002780;1.21e-09;41!UBERON:0001890;1.21e-09;41!UBERON:0001950;2.56e-09;20!UBERON:0000956;3.79e-09;25!UBERON:0000203;3.79e-09;25!UBERON:0000073;5.14e-08;53!UBERON:0002616;5.14e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.71e-13,56;UBERON:0005068,1.71e-13,56;UBERON:0006241,1.71e-13,56;UBERON:0007135,1.71e-13,56;UBERON:0000073,3.74e-13,53;UBERON:0002616,3.74e-13,53;UBERON:0002780,7.66e-13,41;UBERON:0001890,7.66e-13,41;UBERON:0003080,7.66e-13,41;UBERON:0006240,7.66e-13,41;UBERON:0003528,1.11e-12,34;UBERON:0002020,1.11e-12,34;UBERON:0001893,2.76e-12,34;UBERON:0001869,4.30e-12,32;UBERON:0002791,8.04e-12,32;UBERON:0002619,2.48e-10,22;UBERON:0000955,4.23e-10,68;UBERON:0006238,4.23e-10,68;UBERON:0003075,1.87e-09,82;UBERON:0007284,1.87e-09,82;UBERON:0001950,2.54e-09,20;UBERON:0002346,2.79e-09,86;UBERON:0000956,3.50e-09,25;UBERON:0000203,3.50e-09,25;UBERON:0001016,5.02e-09,89;UBERON:0001017,1.21e-08,81;UBERON:0003056,1.57e-08,61;UBERON:0010371,1.15e-07,104 | |||
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| ||
|short_description=p1@SLC1A4 | |short_description=p1@SLC1A4 | ||
}} | }} |
Latest revision as of 00:21, 18 September 2015
Short description: | p1@SLC1A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC1A4_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 0bp_to_ENST00000234256, ENST00000448784, NM_003038_5end |
EntrezGene: | SLC1A4 |
HGNC: | 10942 |
UniProt: | P43007E1B6X0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.71e-13 | 56 |
neural rod | 1.71e-13 | 56 |
future spinal cord | 1.71e-13 | 56 |
neural keel | 1.71e-13 | 56 |
regional part of nervous system | 3.74e-13 | 53 |
regional part of brain | 3.74e-13 | 53 |
regional part of forebrain | 7.66e-13 | 41 |
forebrain | 7.66e-13 | 41 |
anterior neural tube | 7.66e-13 | 41 |
future forebrain | 7.66e-13 | 41 |
brain grey matter | 1.11e-12 | 34 |
gray matter | 1.11e-12 | 34 |
telencephalon | 2.76e-12 | 34 |
cerebral hemisphere | 4.30e-12 | 32 |
regional part of telencephalon | 8.04e-12 | 32 |
regional part of cerebral cortex | 2.48e-10 | 22 |
brain | 4.23e-10 | 68 |
future brain | 4.23e-10 | 68 |
neural plate | 1.87e-09 | 82 |
presumptive neural plate | 1.87e-09 | 82 |
neocortex | 2.54e-09 | 20 |
neurectoderm | 2.79e-09 | 86 |
cerebral cortex | 3.50e-09 | 25 |
pallium | 3.50e-09 | 25 |
nervous system | 5.02e-09 | 89 |
central nervous system | 1.21e-08 | 81 |
pre-chordal neural plate | 1.57e-08 | 61 |
ecto-epithelium | 1.15e-07 | 104 |