FFCP PHASE1:Hg19::chr3:181431210..181431225,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:181431210..181431225,- | |||
|coexpression_cluster_id=C1056 | |coexpression_cluster_id=C1056 | ||
|description=CAGE_peak_at_chr3:181431210..181431225,- | |description=CAGE_peak_at_chr3:181431210..181431225,- | ||
|id=chr3:181431210..181431225,- | |id=chr3:181431210..181431225,- | ||
|ontology_enrichment_celltype=CL:0002319!1.27e-16!25;CL:0000128!1.15e-11!7;CL:0000126!1.15e-11!7;CL:0000127!1.15e-11!7;CL:0002453!1.15e-11!7;CL:0000540!1.22e-11!6;CL:0000031!1.22e-11!6;CL:0000404!1.22e-11!6;CL:0000047!6.40e-11!8;CL:0000133!9.19e-11!59;CL:0002322!1.34e-09!5;CL:0000221!1.35e-08!71;CL:0000095!1.66e-08!17;CL:0000123!1.66e-08!17;CL:0000333!4.16e-07!41 | |ontology_enrichment_celltype=CL:0002319!1.27e-16!25;CL:0000128!1.15e-11!7;CL:0000126!1.15e-11!7;CL:0000127!1.15e-11!7;CL:0002453!1.15e-11!7;CL:0000540!1.22e-11!6;CL:0000031!1.22e-11!6;CL:0000404!1.22e-11!6;CL:0000047!6.40e-11!8;CL:0000133!9.19e-11!59;CL:0002322!1.34e-09!5;CL:0000221!1.35e-08!71;CL:0000095!1.66e-08!17;CL:0000123!1.66e-08!17;CL:0000333!4.16e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.62e-31;5!CL:0000540;5.74e-28;6!CL:0000404;5.74e-28;6!CL:0002319;1.30e-22;25!CL:0000128;4.98e-15;7!CL:0000126;4.98e-15;7!CL:0000127;4.98e-15;7!CL:0002321;9.52e-15;15!CL:0002605;7.63e-10;3!CL:0002603;2.30e-09;3!CL:0000095;2.61e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.99e-31,5;CL:0000540,6.26e-28,6;CL:0000031,6.26e-28,6;CL:0000404,6.26e-28,6;CL:0002319,1.48e-22,25;CL:0000047,6.46e-21,8;CL:0000133,4.93e-18,59;CL:0000128,7.58e-15,7;CL:0000126,7.58e-15,7;CL:0000127,7.58e-15,7;CL:0002453,7.58e-15,7;CL:0000221,2.21e-14,72;CL:0000333,1.46e-10,41;CL:0002605,7.81e-10,3;CL:0002603,3.67e-09,3;CL:0000095,2.79e-08,17;CL:0000123,2.79e-08,17 | |||
|ontology_enrichment_development_v019=CL:0000031;5.74e-28;6!CL:0000133;2.10e-11;59 | |||
|ontology_enrichment_disease=DOID:3095!2.70e-07!22;DOID:2994!2.70e-07!22 | |ontology_enrichment_disease=DOID:3095!2.70e-07!22;DOID:2994!2.70e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.83e-07;22!DOID:2994;2.83e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.07e-07,22;DOID:2994,3.07e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!8.02e-55!82;UBERON:0001049!3.09e-54!57;UBERON:0005068!3.09e-54!57;UBERON:0006241!3.09e-54!57;UBERON:0007135!3.09e-54!57;UBERON:0000073!3.23e-54!94;UBERON:0001016!3.23e-54!94;UBERON:0005743!1.89e-51!86;UBERON:0002616!7.06e-47!59;UBERON:0000955!3.54e-43!69;UBERON:0006238!3.54e-43!69;UBERON:0002780!1.67e-38!41;UBERON:0001890!1.67e-38!41;UBERON:0006240!1.67e-38!41;UBERON:0003080!2.45e-37!42;UBERON:0002346!3.56e-37!90;UBERON:0003075!5.14e-36!86;UBERON:0007284!5.14e-36!86;UBERON:0000924!1.34e-35!173;UBERON:0006601!1.34e-35!173;UBERON:0001893!1.99e-34!34;UBERON:0004121!2.70e-34!169;UBERON:0002020!5.18e-34!34;UBERON:0003528!5.18e-34!34;UBERON:0002791!3.26e-33!33;UBERON:0001869!7.48e-32!32;UBERON:0000033!4.21e-29!123;UBERON:0000153!5.94e-27!129;UBERON:0007811!5.94e-27!129;UBERON:0003056!1.17e-25!61;UBERON:0000956!2.40e-25!25;UBERON:0000203!2.40e-25!25;UBERON:0007023!5.77e-21!115;UBERON:0002619!8.43e-21!22;UBERON:0001950!2.82e-18!20;UBERON:0003076!1.25e-17!15;UBERON:0003057!1.25e-17!15;UBERON:0004733!1.41e-13!12;UBERON:0002028!1.41e-13!12;UBERON:0007277!1.41e-13!12;UBERON:0004732!2.51e-12!13;UBERON:0002420!8.35e-11!9;UBERON:0007245!8.35e-11!9;UBERON:0010009!8.35e-11!9;UBERON:0010011!8.35e-11!9;UBERON:0000454!8.35e-11!9;UBERON:0000025!3.32e-10!194;UBERON:0002308!4.99e-10!9;UBERON:0000125!4.99e-10!9;UBERON:0002680!6.50e-10!9;UBERON:0001895!6.50e-10!9;UBERON:0010092!6.50e-10!9;UBERON:0000200!1.45e-09!6;UBERON:0000064!1.82e-09!219;UBERON:0001872!1.33e-08!5;UBERON:0004111!2.43e-08!241;UBERON:0000349!2.92e-08!5;UBERON:0002298!2.98e-08!8;UBERON:0009663!4.29e-08!7;UBERON:0000922!4.52e-07!612;UBERON:0002037!5.31e-07!6;UBERON:0006215!5.31e-07!6;UBERON:0000477!7.04e-07!286;UBERON:0000369!7.80e-07!4;UBERON:0002435!7.80e-07!4;UBERON:0000204!7.80e-07!4;UBERON:0010082!7.80e-07!4;UBERON:0000475!9.07e-07!365 | |ontology_enrichment_uberon=UBERON:0001017!8.02e-55!82;UBERON:0001049!3.09e-54!57;UBERON:0005068!3.09e-54!57;UBERON:0006241!3.09e-54!57;UBERON:0007135!3.09e-54!57;UBERON:0000073!3.23e-54!94;UBERON:0001016!3.23e-54!94;UBERON:0005743!1.89e-51!86;UBERON:0002616!7.06e-47!59;UBERON:0000955!3.54e-43!69;UBERON:0006238!3.54e-43!69;UBERON:0002780!1.67e-38!41;UBERON:0001890!1.67e-38!41;UBERON:0006240!1.67e-38!41;UBERON:0003080!2.45e-37!42;UBERON:0002346!3.56e-37!90;UBERON:0003075!5.14e-36!86;UBERON:0007284!5.14e-36!86;UBERON:0000924!1.34e-35!173;UBERON:0006601!1.34e-35!173;UBERON:0001893!1.99e-34!34;UBERON:0004121!2.70e-34!169;UBERON:0002020!5.18e-34!34;UBERON:0003528!5.18e-34!34;UBERON:0002791!3.26e-33!33;UBERON:0001869!7.48e-32!32;UBERON:0000033!4.21e-29!123;UBERON:0000153!5.94e-27!129;UBERON:0007811!5.94e-27!129;UBERON:0003056!1.17e-25!61;UBERON:0000956!2.40e-25!25;UBERON:0000203!2.40e-25!25;UBERON:0007023!5.77e-21!115;UBERON:0002619!8.43e-21!22;UBERON:0001950!2.82e-18!20;UBERON:0003076!1.25e-17!15;UBERON:0003057!1.25e-17!15;UBERON:0004733!1.41e-13!12;UBERON:0002028!1.41e-13!12;UBERON:0007277!1.41e-13!12;UBERON:0004732!2.51e-12!13;UBERON:0002420!8.35e-11!9;UBERON:0007245!8.35e-11!9;UBERON:0010009!8.35e-11!9;UBERON:0010011!8.35e-11!9;UBERON:0000454!8.35e-11!9;UBERON:0000025!3.32e-10!194;UBERON:0002308!4.99e-10!9;UBERON:0000125!4.99e-10!9;UBERON:0002680!6.50e-10!9;UBERON:0001895!6.50e-10!9;UBERON:0010092!6.50e-10!9;UBERON:0000200!1.45e-09!6;UBERON:0000064!1.82e-09!219;UBERON:0001872!1.33e-08!5;UBERON:0004111!2.43e-08!241;UBERON:0000349!2.92e-08!5;UBERON:0002298!2.98e-08!8;UBERON:0009663!4.29e-08!7;UBERON:0000922!4.52e-07!612;UBERON:0002037!5.31e-07!6;UBERON:0006215!5.31e-07!6;UBERON:0000477!7.04e-07!286;UBERON:0000369!7.80e-07!4;UBERON:0002435!7.80e-07!4;UBERON:0000204!7.80e-07!4;UBERON:0010082!7.80e-07!4;UBERON:0000475!9.07e-07!365 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.39e-13,89;UBERON:0001017,1.11e-12,81;UBERON:0000073,2.81e-08,53;UBERON:0002616,2.81e-08,53;UBERON:0001049,9.10e-08,56;UBERON:0005068,9.10e-08,56;UBERON:0006241,9.10e-08,56;UBERON:0007135,9.10e-08,56 | |||
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|short_description=p@chr3:181431210..181431225,- | |short_description=p@chr3:181431210..181431225,- | ||
}} | }} |
Latest revision as of 18:36, 29 July 2015
Short description: | p@chr3:181431210..181431225, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:181431210..181431225, - |
Coexpression cluster: | C1056_small_Neural_Astrocyte_teratocarcinoma_H9_hippocampus_testicular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.99e-31 | 5 |
neuron | 6.26e-28 | 6 |
neuroblast | 6.26e-28 | 6 |
electrically signaling cell | 6.26e-28 | 6 |
neural cell | 1.48e-22 | 25 |
neuronal stem cell | 6.46e-21 | 8 |
neurectodermal cell | 4.93e-18 | 59 |
oligodendrocyte | 7.58e-15 | 7 |
macroglial cell | 7.58e-15 | 7 |
astrocyte | 7.58e-15 | 7 |
oligodendrocyte precursor cell | 7.58e-15 | 7 |
ectodermal cell | 2.21e-14 | 72 |
migratory neural crest cell | 1.46e-10 | 41 |
astrocyte of the cerebral cortex | 7.81e-10 | 3 |
astrocyte of the cerebellum | 3.67e-09 | 3 |
neuron associated cell | 2.79e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 2.79e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.39e-13 | 89 |
central nervous system | 1.11e-12 | 81 |
regional part of nervous system | 2.81e-08 | 53 |
regional part of brain | 2.81e-08 | 53 |
neural tube | 9.10e-08 | 56 |
neural rod | 9.10e-08 | 56 |
future spinal cord | 9.10e-08 | 56 |
neural keel | 9.10e-08 | 56 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.07e-07 | 22 |
germ cell cancer | 3.07e-07 | 22 |