FFCP PHASE1:Hg19::chr4:83812268..83812401,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22872 | |EntrezGene=22872 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17052 | |HGNC=17052 | ||
|TSSclassifier=strong | |||
|UniProt=O94979,B7ZL00,D6RAB3,D6RHE8,D6RHZ5,B4DIW6 | |UniProt=O94979,B7ZL00,D6RAB3,D6RHE8,D6RHZ5,B4DIW6 | ||
|association_with_transcript=0bp_to_ENST00000311785,ENST00000326950,ENST00000348405,ENST00000432794,ENST00000436790,ENST00000443462,ENST00000448323,ENST00000503058,ENST00000505984,ENST00000506497,ENST00000507340,ENST00000507816,ENST00000507867,ENST00000508479,ENST00000508502,ENST00000509142,ENST00000511975,ENST00000513858,NM_001191049,uc003hnf.2,uc003hng.2,uc003hnh.2,uc003hni.2,uc003hnj.2,uc003hnk.2,uc003hnl.2,uc003hnn.1,uc003hno.2,uc011ccl.1,uc011ccm.1,uc011ccn.1_5end | |association_with_transcript=0bp_to_ENST00000311785,ENST00000326950,ENST00000348405,ENST00000432794,ENST00000436790,ENST00000443462,ENST00000448323,ENST00000503058,ENST00000505984,ENST00000506497,ENST00000507340,ENST00000507816,ENST00000507867,ENST00000508479,ENST00000508502,ENST00000509142,ENST00000511975,ENST00000513858,NM_001191049,uc003hnf.2,uc003hng.2,uc003hnh.2,uc003hni.2,uc003hnj.2,uc003hnk.2,uc003hnl.2,uc003hnn.1,uc003hno.2,uc011ccl.1,uc011ccm.1,uc011ccn.1_5end | ||
|cluster_id=chr4:83812268..83812401,- | |||
|coexpression_cluster_id=C1465 | |coexpression_cluster_id=C1465 | ||
|description=CAGE_peak_1_at_SEC31A_5end | |description=CAGE_peak_1_at_SEC31A_5end | ||
|id=chr4:83812268..83812401,- | |id=chr4:83812268..83812401,- | ||
|ontology_enrichment_celltype=CL:0000055!5.43e-24!180;CL:0000057!2.30e-16!75;CL:0000680!4.71e-16!57;CL:0000056!4.71e-16!57;CL:0000355!4.71e-16!57;CL:0000187!4.50e-15!54;CL:0000048!7.50e-15!430;CL:0000723!2.27e-14!436;CL:0000034!4.20e-13!444;CL:0000359!1.26e-12!32;CL:0000192!1.38e-12!42;CL:0000514!1.38e-12!42;CL:0000183!1.89e-11!59;CL:0002371!2.59e-11!591;CL:0000393!3.62e-11!60;CL:0000211!3.62e-11!60;CL:0000144!5.23e-11!625;CL:0000222!6.36e-11!119;CL:0002620!2.27e-10!23 | |ontology_enrichment_celltype=CL:0000055!5.43e-24!180;CL:0000057!2.30e-16!75;CL:0000680!4.71e-16!57;CL:0000056!4.71e-16!57;CL:0000355!4.71e-16!57;CL:0000187!4.50e-15!54;CL:0000048!7.50e-15!430;CL:0000723!2.27e-14!436;CL:0000034!4.20e-13!444;CL:0000359!1.26e-12!32;CL:0000192!1.38e-12!42;CL:0000514!1.38e-12!42;CL:0000183!1.89e-11!59;CL:0002371!2.59e-11!591;CL:0000393!3.62e-11!60;CL:0000211!3.62e-11!60;CL:0000144!5.23e-11!625;CL:0000222!6.36e-11!119;CL:0002620!2.27e-10!23 | ||
|ontology_enrichment_celltype_v019=CL:0000359;7.51e-12;32!CL:0002620;2.23e-10;23!CL:0000192;1.75e-09;43!CL:0000134;1.46e-08;55!CL:0000187;2.80e-08;55!CL:0000723;7.27e-08;61!CL:0000048;9.55e-08;58!CL:0000057;2.30e-07;73!CL:0000393;5.58e-07;61!CL:0000211;5.58e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.49e-17,76;CL:0000048,2.34e-16,427;CL:0000680,2.38e-16,58;CL:0000056,2.38e-16,58;CL:0000355,2.38e-16,58;CL:0000723,7.58e-16,433;CL:0000187,2.28e-15,55;CL:0000034,1.67e-14,441;CL:0000192,7.08e-13,43;CL:0000514,7.08e-13,43;CL:0000359,1.26e-12,32;CL:0000393,1.91e-11,61;CL:0000211,1.91e-11,61;CL:0000222,6.64e-11,121;CL:0002620,2.27e-10,23 | |||
|ontology_enrichment_development_v019=CL:0000514;1.75e-09;43!CL:0000355;1.74e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.92e-20!83;UBERON:0002329!1.92e-20!83;UBERON:0003077!1.92e-20!83;UBERON:0003059!1.92e-20!83;UBERON:0007282!1.92e-20!83;UBERON:0009618!1.92e-20!83;UBERON:0007285!1.92e-20!83;UBERON:0004290!2.60e-17!70;UBERON:0004872!8.46e-16!84;UBERON:0002385!2.23e-15!63;UBERON:0001015!2.23e-15!63;UBERON:0000383!2.23e-15!63;UBERON:0001134!3.46e-15!61;UBERON:0002036!3.46e-15!61;UBERON:0003082!3.46e-15!61;UBERON:0000486!1.04e-14!82;UBERON:0001637!3.78e-13!42;UBERON:0003509!3.78e-13!42;UBERON:0004572!3.78e-13!42;UBERON:0002049!6.07e-13!79;UBERON:0007798!6.07e-13!79;UBERON:0001981!2.22e-12!60;UBERON:0007500!2.22e-12!60;UBERON:0004537!2.22e-12!60;UBERON:0006965!2.22e-12!60;UBERON:0000055!7.85e-12!69;UBERON:0000490!9.28e-12!138;UBERON:0005256!2.35e-11!143;UBERON:0004573!4.24e-11!33;UBERON:0004571!4.24e-11!33;UBERON:0004535!1.56e-10!110;UBERON:0001009!4.33e-10!113;UBERON:0002199!5.89e-09!45;UBERON:0002416!5.89e-09!45;UBERON:0003102!6.80e-09!95;UBERON:0002097!5.87e-08!40;UBERON:0003914!6.32e-08!118;UBERON:0000947!4.64e-07!21;UBERON:0010191!4.64e-07!21;UBERON:0002100!6.69e-07!216 | |ontology_enrichment_uberon=UBERON:0000914!1.92e-20!83;UBERON:0002329!1.92e-20!83;UBERON:0003077!1.92e-20!83;UBERON:0003059!1.92e-20!83;UBERON:0007282!1.92e-20!83;UBERON:0009618!1.92e-20!83;UBERON:0007285!1.92e-20!83;UBERON:0004290!2.60e-17!70;UBERON:0004872!8.46e-16!84;UBERON:0002385!2.23e-15!63;UBERON:0001015!2.23e-15!63;UBERON:0000383!2.23e-15!63;UBERON:0001134!3.46e-15!61;UBERON:0002036!3.46e-15!61;UBERON:0003082!3.46e-15!61;UBERON:0000486!1.04e-14!82;UBERON:0001637!3.78e-13!42;UBERON:0003509!3.78e-13!42;UBERON:0004572!3.78e-13!42;UBERON:0002049!6.07e-13!79;UBERON:0007798!6.07e-13!79;UBERON:0001981!2.22e-12!60;UBERON:0007500!2.22e-12!60;UBERON:0004537!2.22e-12!60;UBERON:0006965!2.22e-12!60;UBERON:0000055!7.85e-12!69;UBERON:0000490!9.28e-12!138;UBERON:0005256!2.35e-11!143;UBERON:0004573!4.24e-11!33;UBERON:0004571!4.24e-11!33;UBERON:0004535!1.56e-10!110;UBERON:0001009!4.33e-10!113;UBERON:0002199!5.89e-09!45;UBERON:0002416!5.89e-09!45;UBERON:0003102!6.80e-09!95;UBERON:0002097!5.87e-08!40;UBERON:0003914!6.32e-08!118;UBERON:0000947!4.64e-07!21;UBERON:0010191!4.64e-07!21;UBERON:0002100!6.69e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.19e-10;33!UBERON:0004571;4.19e-10;33!UBERON:0001637;1.56e-09;42!UBERON:0003509;1.56e-09;42!UBERON:0004572;1.56e-09;42!UBERON:0002385;1.79e-07;31!UBERON:0001015;1.79e-07;31!UBERON:0000383;1.79e-07;31!UBERON:0007500;2.37e-07;56!UBERON:0001981;2.37e-07;56!UBERON:0004537;2.37e-07;56!UBERON:0000947;4.73e-07;21!UBERON:0010191;4.73e-07;21!UBERON:0002097;8.07e-07;41 | |||
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|short_description=p1@SEC31A | |short_description=p1@SEC31A | ||
}} | }} |
Latest revision as of 01:20, 19 September 2015
Short description: | p1@SEC31A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEC31A_5end |
Coexpression cluster: | C1465_Mast_Preadipocyte_Fibroblast_Smooth_Chondrocyte_basal_Osteoblast |
Association with transcript: | 0bp_to_ENST00000311785, ENST00000326950, ENST00000348405, ENST00000432794, ENST00000436790, ENST00000443462, ENST00000448323, ENST00000503058, ENST00000505984, ENST00000506497, ENST00000507340, ENST00000507816, ENST00000507867, ENST00000508479, ENST00000508502, ENST00000509142, ENST00000511975, ENST00000513858, NM_001191049, uc003hnf.2, uc003hng.2, uc003hnh.2, uc003hni.2, uc003hnj.2, uc003hnk.2, uc003hnl.2, uc003hnn.1, uc003hno.2, uc011ccl.1, uc011ccm.1, uc011ccn.1_5end |
EntrezGene: | SEC31A |
HGNC: | 17052 |
UniProt: | O94979B7ZL00D6RAB3D6RHE8D6RHZ5B4DIW6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.49e-17 | 76 |
multi fate stem cell | 2.34e-16 | 427 |
muscle precursor cell | 2.38e-16 | 58 |
myoblast | 2.38e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.38e-16 | 58 |
somatic stem cell | 7.58e-16 | 433 |
muscle cell | 2.28e-15 | 55 |
stem cell | 1.67e-14 | 441 |
smooth muscle cell | 7.08e-13 | 43 |
smooth muscle myoblast | 7.08e-13 | 43 |
vascular associated smooth muscle cell | 1.26e-12 | 32 |
electrically responsive cell | 1.91e-11 | 61 |
electrically active cell | 1.91e-11 | 61 |
mesodermal cell | 6.64e-11 | 121 |
skin fibroblast | 2.27e-10 | 23 |