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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0005795,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0006598,UBERON:0002532,UBERON:0003100,UBERON:0000474,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00005412
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0002320,CL:0000063,CL:0000066,CL:0002371,CL:0000219,CL:0000499,CL:0000220,CL:0000004,CL:0000134,CL:0000255,CL:0002076,CL:0002149,CL:0002255,CL:0000223
|accession_numbers=CAGE;DRX008000;DRR008872;DRZ000297;DRZ001682;DRZ011647;DRZ013032
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:3001
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:3001
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0103803,FF:0100297,FF:0101120,FF:0100167,FF:0100658,FF:0101555
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:35294075..35294102,+!p1@ENST00000559335!1.90!79.31!LHX1;;chr2:114036488..114036504,-!p1@PAX8!1.85!69.75!PAX8;;chr17:46675558..46675577,-!p2@HOXB6!1.63!42.04!HOXB6;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.31!HOXB6;;chr17:46622205..46622218,-!p3@HOXB2!1.40!27.71!HOXB2;;chr8:55370487..55370503,+!p1@SOX17!1.38!22.93!SOX17;;chr17:46675420..46675465,-!p3@HOXB6!1.37!25.80!HOXB6;;chr6:10412600..10412637,-!p1@TFAP2A!1.26!28.67!TFAP2A;;chr20:30433396..30433414,-!p1@FOXS1!1.26!17.20!FOXS1;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.84!PITX1;;chr19:3574330..3574393,+!p2@HMG20B!1.24!16.24!HMG20B;;chr17:46688334..46688385,-!p1@HOXB7!1.21!21.98!HOXB7;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.29!SOX7;;chr17:46690839..46690884,-!p1@HOXB8!1.19!14.33!HOXB8;;chr17:46691732..46691766,-!p4@HOXB8!1.10!11.47!HOXB8;;chr8:67874805..67874831,-!p1@TCF24!1.10!11.47!TCF24;;chr17:46622229..46622257,-!p6@HOXB2!1.06!12.42!HOXB2;;chr17:46687935..46687950,-!p3@HOXB7!1.06!10.51!HOXB7;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.51!HOXD8;;chr3:168865144..168865160,-!p6@MECOM!1.06!10.51!MECOM;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.33!HOXB7;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.47!HOXB2;;chr4:4861385..4861398,+!p1@MSX1!1.02!28.67!MSX1;;chr17:36105042..36105060,-!p1@HNF1B!1.02!9.56!HNF1B;;chr8:49833978..49833996,-!p1@SNAI2!0.97!176.77!SNAI2;;chr19:45971246..45971265,+!p1@FOSB!0.95!150.98!FOSB;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.16!HOXB2;;chr19:22235279..22235301,+!p1@ZNF257!0.95!15.29!ZNF257;;chr19:22817119..22817145,+!p1@ZNF492!0.95!13.38!ZNF492;;chr3:169381183..169381205,-!p4@MECOM!0.94!7.64!MECOM;;chr12:66218598..66218645,+!p2@HMGA2!0.93!36.31!HMGA2;;chr12:77459306..77459365,-!p1@E2F7!0.92!94.60!E2F7;;chr6:34204921..34204939,+!p3@HMGA1!0.91!223.60!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.07!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.91!SNAI2;;chr7:63505799..63505904,+!p1@ZNF727!0.89!6.69!ZNF727;;chr17:46675619..46675642,-!p5@HOXB6!0.89!6.69!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.89!6.69!HOXB8;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.89!6.69!ZNF676;;chr21:38071430..38071456,+!p1@SIM2!0.89!6.69!SIM2;;chr12:85673977..85674015,+!p1@ALX1!0.89!6.69!ALX1;;chr11:65667846..65667868,-!p1@FOSL1!0.88!185.37!FOSL1;;chr20:42295745..42295765,+!p1@MYBL2!0.87!110.84!MYBL2;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.58!FOXD1;;chr19:56879472..56879529,+!p2@ZNF542!0.87!14.33!ZNF542;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.64!MECOM;;chr12:66218183..66218209,+!p4@HMGA2!0.86!12.42!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.64!TFAP2A;;chr19:21106081..21106115,+!p2@ZNF85!0.84!18.16!ZNF85;;chr8:72756063..72756125,-!p1@MSC!0.84!12.42!MSC;;chr12:66218212..66218244,+!p5@HMGA2!0.83!8.60!HMGA2;;chr10:135122868..135122893,+!p3@ZNF511!0.83!5.73!ZNF511;;chr17:46675539..46675551,-!p7@HOXB6!0.83!5.73!HOXB6;;chr22:19748231..19748317,+!p1@TBX1!0.83!5.73!TBX1;;chr2:113982635..113982648,-!p8@PAX8!0.83!5.73!PAX8;;chr3:168864936..168864953,-!p8@MECOM!0.83!5.73!MECOM;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.73!BNC2;;chr6:21597765..21597779,+!p2@SOX4!0.82!48.73!SOX4;;chr6:45390269..45390298,+!p5@RUNX2!0.82!9.56!RUNX2;;chr1:247171316..247171336,-!p3@ZNF695!0.82!8.60!ZNF695;;chr19:21106049..21106072,+!p1@ZNF85!0.81!32.49!ZNF85;;chr17:46622114..46622138,-!p4@HOXB2!0.81!8.60!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!0.81!7.64!FOXF2;;chr3:193853927..193853944,+!p1@HES1!0.79!185.37!HES1;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.55!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.44!MYBL2;;chr20:2673383..2673441,+!p1@EBF4!0.79!8.60!EBF4;;chr6:1612248..1612281,+!p2@FOXC1!0.79!5.73!FOXC1;;chr6:21597514..21597578,+!p4@SOX4!0.77!8.60!SOX4;;chr17:46621101..46621143,-!p7@HOXB2!0.76!6.69!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.76!4.78!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.76!4.78!HOXB3;;chr17:46692318..46692362,-!p5@HOXB8!0.76!4.78!HOXB8;;chr3:168865250..168865272,-!p5@MECOM!0.76!4.78!MECOM;;chr19:38183138..38183157,-!p2@ZNF781!0.76!4.78!ZNF781;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.78!NPAS1;;chr13:100634031..100634045,+!p1@ZIC2!0.76!4.78!ZIC2;;chr13:73633131..73633149,+!p1@KLF5!0.75!54.47!KLF5;;chr6:1312325..1312340,+!p1@FOXQ1!0.74!7.64!FOXQ1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.29!TWIST2;;chr6:45390077..45390105,+!p9@RUNX2!0.73!5.73!RUNX2;;chr14:75745523..75745537,+!p1@FOS!0.72!570.46!FOS;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.16!FOSL1;;chr2:239756739..239756755,+!p2@TWIST2!0.72!7.64!TWIST2;;chr6:21593973..21593988,+!p1@SOX4!0.71!170.09!SOX4;;chrX:70503529..70503549,+!p2@NONO!0.71!24.84!NONO;;chr6:45296048..45296082,+!p1@RUNX2!0.71!4.78!RUNX2;;chr1:221052776..221052799,+!p1@HLX!0.70!7.64!HLX;;chr6:45390300..45390335,+!p4@RUNX2!0.70!6.69!RUNX2;;chr8:72756667..72756736,-!p2@MSC!0.70!6.69!MSC;;chr3:5021191..5021202,+!p3@BHLHE40!0.69!11.47!BHLHE40;;chr12:96588368..96588394,+!p3@ELK3!0.69!11.47!ELK3;;chr8:60031682..60031710,-!p2@TOX!0.69!6.69!TOX;;chr7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|expression_enrichment_score=chr17:35294075..35294102,+!p1@ENST00000559335!1.90!79.31!LHX1;;chr2:114036488..114036504,-!p1@PAX8!1.85!69.75!PAX8;;chr17:46675558..46675577,-!p2@HOXB6!1.63!42.04!HOXB6;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.31!HOXB6;;chr17:46622205..46622218,-!p3@HOXB2!1.40!27.71!HOXB2;;chr8:55370487..55370503,+!p1@SOX17!1.38!22.93!SOX17;;chr17:46675420..46675465,-!p3@HOXB6!1.37!25.80!HOXB6;;chr6:10412600..10412637,-!p1@TFAP2A!1.26!28.67!TFAP2A;;chr20:30433396..30433414,-!p1@FOXS1!1.26!17.20!FOXS1;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.84!PITX1;;chr19:3574330..3574393,+!p2@HMG20B!1.24!16.24!HMG20B;;chr17:46688334..46688385,-!p1@HOXB7!1.21!21.98!HOXB7;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.29!SOX7;;chr17:46690839..46690884,-!p1@HOXB8!1.19!14.33!HOXB8;;chr17:46691732..46691766,-!p4@HOXB8!1.10!11.47!HOXB8;;chr8:67874805..67874831,-!p1@TCF24!1.10!11.47!TCF24;;chr17:46622229..46622257,-!p6@HOXB2!1.06!12.42!HOXB2;;chr17:46687935..46687950,-!p3@HOXB7!1.06!10.51!HOXB7;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.51!HOXD8;;chr3:168865144..168865160,-!p6@MECOM!1.06!10.51!MECOM;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.33!HOXB7;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.47!HOXB2;;chr4:4861385..4861398,+!p1@MSX1!1.02!28.67!MSX1;;chr17:36105042..36105060,-!p1@HNF1B!1.02!9.56!HNF1B;;chr8:49833978..49833996,-!p1@SNAI2!0.97!176.77!SNAI2;;chr19:45971246..45971265,+!p1@FOSB!0.95!150.98!FOSB;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.16!HOXB2;;chr19:22235279..22235301,+!p1@ZNF257!0.95!15.29!ZNF257;;chr19:22817119..22817145,+!p1@ZNF492!0.95!13.38!ZNF492;;chr3:169381183..169381205,-!p4@MECOM!0.94!7.64!MECOM;;chr12:66218598..66218645,+!p2@HMGA2!0.93!36.31!HMGA2;;chr12:77459306..77459365,-!p1@E2F7!0.92!94.60!E2F7;;chr6:34204921..34204939,+!p3@HMGA1!0.91!223.60!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.07!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.91!SNAI2;;chr7:63505799..63505904,+!p1@ZNF727!0.89!6.69!ZNF727;;chr17:46675619..46675642,-!p5@HOXB6!0.89!6.69!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.89!6.69!HOXB8;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.89!6.69!ZNF676;;chr21:38071430..38071456,+!p1@SIM2!0.89!6.69!SIM2;;chr12:85673977..85674015,+!p1@ALX1!0.89!6.69!ALX1;;chr11:65667846..65667868,-!p1@FOSL1!0.88!185.37!FOSL1;;chr20:42295745..42295765,+!p1@MYBL2!0.87!110.84!MYBL2;;chr5:72744594..72744609,-!p1@FOXD1!0.87!30.58!FOXD1;;chr19:56879472..56879529,+!p2@ZNF542!0.87!14.33!ZNF542;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.64!MECOM;;chr12:66218183..66218209,+!p4@HMGA2!0.86!12.42!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.64!TFAP2A;;chr19:21106081..21106115,+!p2@ZNF85!0.84!18.16!ZNF85;;chr8:72756063..72756125,-!p1@MSC!0.84!12.42!MSC;;chr12:66218212..66218244,+!p5@HMGA2!0.83!8.60!HMGA2;;chr10:135122868..135122893,+!p3@ZNF511!0.83!5.73!ZNF511;;chr17:46675539..46675551,-!p7@HOXB6!0.83!5.73!HOXB6;;chr22:19748231..19748317,+!p1@TBX1!0.83!5.73!TBX1;;chr2:113982635..113982648,-!p8@PAX8!0.83!5.73!PAX8;;chr3:168864936..168864953,-!p8@MECOM!0.83!5.73!MECOM;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.73!BNC2;;chr6:21597765..21597779,+!p2@SOX4!0.82!48.73!SOX4;;chr6:45390269..45390298,+!p5@RUNX2!0.82!9.56!RUNX2;;chr1:247171316..247171336,-!p3@ZNF695!0.82!8.60!ZNF695;;chr19:21106049..21106072,+!p1@ZNF85!0.81!32.49!ZNF85;;chr17:46622114..46622138,-!p4@HOXB2!0.81!8.60!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!0.81!7.64!FOXF2;;chr3:193853927..193853944,+!p1@HES1!0.79!185.37!HES1;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.55!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.44!MYBL2;;chr20:2673383..2673441,+!p1@EBF4!0.79!8.60!EBF4;;chr6:1612248..1612281,+!p2@FOXC1!0.79!5.73!FOXC1;;chr6:21597514..21597578,+!p4@SOX4!0.77!8.60!SOX4;;chr17:46621101..46621143,-!p7@HOXB2!0.76!6.69!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.76!4.78!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.76!4.78!HOXB3;;chr17:46692318..46692362,-!p5@HOXB8!0.76!4.78!HOXB8;;chr3:168865250..168865272,-!p5@MECOM!0.76!4.78!MECOM;;chr19:38183138..38183157,-!p2@ZNF781!0.76!4.78!ZNF781;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.78!NPAS1;;chr13:100634031..100634045,+!p1@ZIC2!0.76!4.78!ZIC2;;chr13:73633131..73633149,+!p1@KLF5!0.75!54.47!KLF5;;chr6:1312325..1312340,+!p1@FOXQ1!0.74!7.64!FOXQ1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.29!TWIST2;;chr6:45390077..45390105,+!p9@RUNX2!0.73!5.73!RUNX2;;chr14:75745523..75745537,+!p1@FOS!0.72!570.46!FOS;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.16!FOSL1;;chr2:239756739..239756755,+!p2@TWIST2!0.72!7.64!TWIST2;;chr6:21593973..21593988,+!p1@SOX4!0.71!170.09!SOX4;;chrX:70503529..70503549,+!p2@NONO!0.71!24.84!NONO;;chr6:45296048..45296082,+!p1@RUNX2!0.71!4.78!RUNX2;;chr1:221052776..221052799,+!p1@HLX!0.70!7.64!HLX;;chr6:45390300..45390335,+!p4@RUNX2!0.70!6.69!RUNX2;;chr8:72756667..72756736,-!p2@MSC!0.70!6.69!MSC;;chr3:5021191..5021202,+!p3@BHLHE40!0.69!11.47!BHLHE40;;chr12:96588368..96588394,+!p3@ELK3!0.69!11.47!ELK3;;chr8:60031682..60031710,-!p2@TOX!0.69!6.69!TOX;;chr7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|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0002532,UBERON:0006603,UBERON:0005795,UBERON:0010316
|fonse_cell_line=FF:0101120,FF:0101555
|fonse_cell_line=FF:0101120,FF:0101555
|fonse_cell_line_closure=FF:0101120,FF:0101555
|fonse_cell_line_closure=FF:0101120,FF:0101555
Line 36: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%252c%2520biol_rep1.CNhs13099.11841-124H5.hg38.nobarcode.ctss.bed.gz
|id=FF:11841-124H5
|id=FF:11841-124H5
|is_a=EFO:0002091;;FF:0000210;;FF:0103803
|is_a=EFO:0002091;;FF:0000210;;FF:0103803
|is_obsolete=
|is_obsolete=
|library_id=CNhs13099
|library_id_phase_based=2:CNhs13099
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11841
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11841
|name=serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1
|name=serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1
|namespace=
|namespace=
Line 44: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13099,LSID1001,release013,COMPLETED
|profile_hcage=CNhs13099,LSID1001,release013,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 59: Line 78:
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Line 80: Line 100:
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|top_motifs=PAX8:1.73901801661;ALX1:1.62949051499;FOXQ1:1.26610144315;HOX{A5,B5}:1.21814442657;ALX4:1.20975265995;PAX4:1.00735172986;NR6A1:0.962560655534;ZBTB16:0.873332111361;LHX3,4:0.804309310324;HOXA9_MEIS1:0.796572472344;NR1H4:0.780790896369;E2F1..5:0.756086698421;ONECUT1,2:0.707460704918;DBP:0.673180063133;POU1F1:0.667448823005;BACH2:0.663428846586;UFEwm:0.648598272183;FOXD3:0.63821344851;AIRE:0.623761871977;HOX{A4,D4}:0.587955858541;NKX3-1:0.568123609586;ADNP_IRX_SIX_ZHX:0.54033928455;RFX1:0.532353300333;MYB:0.515475345926;NFE2L2:0.499721855291;STAT1,3:0.493385256088;EVI1:0.482576091829;FOX{I1,J2}:0.473940323016;POU2F1..3:0.433006042772;GCM1,2:0.353825991763;POU3F1..4:0.32243185435;FOXL1:0.321285481889;ZNF143:0.305692760104;FOS_FOS{B,L1}_JUN{B,D}:0.294589054493;FOSL2:0.282669046853;TEF:0.27494582656;HNF1A:0.250437442148;ARID5B:0.237827563491;NFIL3:0.234593568466;IKZF2:0.219531591441;PRRX1,2:0.217587280507;NKX3-2:0.208112667646;NFE2:0.198845224182;GFI1:0.194473378573;NR3C1:0.179174249644;XCPE1{core}:0.15524515372;NFE2L1:0.152367086567;STAT5{A,B}:0.147512408144;TBP:0.131891391783;POU5F1:0.131829592922;T:0.127662185173;NFY{A,B,C}:0.123622225005;RFX2..5_RFXANK_RFXAP:0.109718577823;SMAD1..7,9:0.109170496484;NRF1:0.0993927470136;SOX2:0.0865715315309;CDC5L:0.069640628356;PBX1:0.0691130592137;TEAD1:0.0600886790667;TFDP1:0.0540113428517;MYOD1:0.0431008932328;TLX1..3_NFIC{dimer}:-0.0177530526175;ZIC1..3:-0.0183127248505;OCT4_SOX2{dimer}:-0.0208380387995;PITX1..3:-0.0233049142112;HES1:-0.0280996158722;GFI1B:-0.0281169240267;ZNF384:-0.0402464580062;CUX2:-0.0455561990988;STAT2,4,6:-0.0651645961775;HSF1,2:-0.0693742676963;EN1,2:-0.0698278798478;PAX3,7:-0.0923735404155;CDX1,2,4:-0.0957713423659;ZNF148:-0.100361771242;RXRA_VDR{dimer}:-0.103740342979;AR:-0.108124416508;ZNF238:-0.110304923903;TP53:-0.119220295029;ZEB1:-0.12492742443;FOXP3:-0.144376897523;NKX2-3_NKX2-5:-0.171680448343;SOX{8,9,10}:-0.176154934551;TBX4,5:-0.179863170097;HNF4A_NR2F1,2:-0.180487775413;IKZF1:-0.185577950295;XBP1:-0.19311386938;PAX6:-0.198144498553;ZBTB6:-0.211347924311;GTF2A1,2:-0.225427500234;ZFP161:-0.229349373201;YY1:-0.243732975137;NFKB1_REL_RELA:-0.248070927988;BREu{core}:-0.250861725552;PDX1:-0.252249672236;VSX1,2:-0.253938311874;ELK1,4_GABP{A,B1}:-0.256092857198;NR5A1,2:-0.256681979401;MYBL2:-0.263934435621;LEF1_TCF7_TCF7L1,2:-0.26709940999;SOX17:-0.272153812394;DMAP1_NCOR{1,2}_SMARC:-0.278543749614;GATA6:-0.281595055573;PPARG:-0.288905587233;HAND1,2:-0.291715037117;NANOG:-0.295132097142;NKX6-1,2:-0.305390522224;PAX1,9:-0.30959896824;HMX1:-0.319501802023;SNAI1..3:-0.328911302784;RUNX1..3:-0.362189633865;HIC1:-0.36914398029;NHLH1,2:-0.371333742511;HLF:-0.37404948954;POU6F1:-0.386489958952;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.398576379339;FOX{F1,F2,J1}:-0.406522813958;LMO2:-0.429675244235;ETS1,2:-0.431707589255;SPIB:-0.433525176784;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.437676573749;ELF1,2,4:-0.441497308045;EP300:-0.442157899982;GTF2I:-0.443956791316;MEF2{A,B,C,D}:-0.447752044194;bHLH_family:-0.45087535845;NANOG{mouse}:-0.451539917811;NKX2-1,4:-0.45339226756;FOXN1:-0.463142647711;AHR_ARNT_ARNT2:-0.475237628009;RORA:-0.480941166192;TAL1_TCF{3,4,12}:-0.486697587134;TFCP2:-0.494586797873;CREB1:-0.495771859847;MZF1:-0.503745609141;HMGA1,2:-0.504082254364;ATF5_CREB3:-0.506626905363;JUN:-0.515329472402;MYFfamily:-0.53524934921;HBP1_HMGB_SSRP1_UBTF:-0.539178278155;KLF4:-0.541184169973;PAX2:-0.548894622886;ESRRA:-0.556463610611;BPTF:-0.557048524651;GZF1:-0.561871246807;MED-1{core}:-0.584667213882;REST:-0.587818801792;SPI1:-0.604231099189;MTE{core}:-0.604731578918;NFATC1..3:-0.610981325656;IRF7:-0.615281616964;TOPORS:-0.618091590239;CEBPA,B_DDIT3:-0.647383693354;EBF1:-0.656235027942;PRDM1:-0.657868341975;TFAP4:-0.658797969846;SRF:-0.672176873004;SPZ1:-0.672369363371;FOXA2:-0.688647124086;RBPJ:-0.691072569684;NKX2-2,8:-0.704736600528;FOXM1:-0.706340360555;PAX5:-0.72871352303;ATF4:-0.745413071305;FOXP1:-0.75165371396;GATA4:-0.753758000311;EGR1..3:-0.777711186252;CRX:-0.779381270682;GLI1..3:-0.795519649807;IRF1,2:-0.796193492351;SP1:-0.806348075662;NFIX:-0.816692535203;RXR{A,B,G}:-0.833028401264;TFAP2B:-0.867057871204;SOX5:-0.878063992861;ZNF423:-0.903734464625;ATF6:-0.935528811931;MAZ:-0.94766324468;RREB1:-0.951917628102;HIF1A:-1.02715363858;ESR1:-1.05562779264;ATF2:-1.1165507393;TFAP2{A,C}:-1.13264301498;TLX2:-1.20105992107;MTF1:-1.23124082766;FOX{D1,D2}:-1.26263733195;HOX{A6,A7,B6,B7}:-1.27529330368;MAFB:-1.30406479291;TGIF1:-1.44507195908;PATZ1:-1.51431524149;SREBF1,2:-1.63761978356;FOXO1,3,4:-2.09140797006
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11841-124H5;search_select_hide=table117:FF:11841-124H5
}}
}}

Latest revision as of 18:23, 4 June 2020

Name:serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1
Species:Human (Homo sapiens)
Library ID:CNhs13099
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005412
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13099 CAGE DRX008000 DRR008872
Accession ID Hg19

Library idBAMCTSS
CNhs13099 DRZ000297 DRZ001682
Accession ID Hg38

Library idBAMCTSS
CNhs13099 DRZ011647 DRZ013032
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.389
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.12
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.261
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0346
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0172
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.594
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.564
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00628
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.433
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.388
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0964
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.291
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.427
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13099

Jaspar motifP-value
MA0002.20.199
MA0003.10.138
MA0004.10.548
MA0006.10.274
MA0007.10.0327
MA0009.10.938
MA0014.10.0434
MA0017.10.463
MA0018.20.00573
MA0019.10.849
MA0024.10.257
MA0025.10.264
MA0027.10.639
MA0028.10.791
MA0029.10.385
MA0030.10.0994
MA0031.10.357
MA0035.20.874
MA0038.10.811
MA0039.20.196
MA0040.10.468
MA0041.10.646
MA0042.10.875
MA0043.13.49847e-4
MA0046.10.158
MA0047.20.259
MA0048.10.524
MA0050.12.29659e-6
MA0051.10.0152
MA0052.10.00985
MA0055.10.261
MA0057.10.432
MA0058.10.193
MA0059.10.243
MA0060.10.00196
MA0061.10.459
MA0062.20.465
MA0065.20.0594
MA0066.10.111
MA0067.10.0154
MA0068.15.65768e-4
MA0069.10.792
MA0070.10.934
MA0071.10.31
MA0072.10.676
MA0073.10.482
MA0074.10.328
MA0076.10.446
MA0077.10.3
MA0078.10.221
MA0079.20.159
MA0080.28.18792e-5
MA0081.10.0511
MA0083.10.852
MA0084.10.917
MA0087.10.245
MA0088.10.0128
MA0090.10.829
MA0091.10.963
MA0092.10.509
MA0093.10.418
MA0099.23.76571e-13
MA0100.10.256
MA0101.10.5
MA0102.20.0651
MA0103.10.273
MA0104.20.922
MA0105.12.96607e-5
MA0106.10.0696
MA0107.10.63
MA0108.20.411
MA0111.10.348
MA0112.20.0121
MA0113.10.723
MA0114.10.325
MA0115.10.723
MA0116.13.89612e-4
MA0117.10.555
MA0119.10.0218
MA0122.10.72
MA0124.10.479
MA0125.10.758
MA0131.10.683
MA0135.10.154
MA0136.19.4705e-4
MA0137.20.877
MA0138.20.375
MA0139.10.236
MA0140.10.915
MA0141.10.0198
MA0142.10.284
MA0143.10.42
MA0144.10.621
MA0145.10.485
MA0146.10.948
MA0147.10.401
MA0148.10.841
MA0149.10.0206
MA0150.10.0388
MA0152.10.0724
MA0153.10.0916
MA0154.10.0753
MA0155.10.908
MA0156.10.0192
MA0157.10.914
MA0159.10.0911
MA0160.10.366
MA0162.10.127
MA0163.10.00218
MA0164.10.785
MA0258.10.0601
MA0259.10.236



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13099

Novel motifP-value
10.00923
100.109
1000.0303
1010.385
1020.845
1030.157
1040.735
1050.783
1060.427
1070.572
1080.659
1090.0663
110.126
1100.239
1110.358
1120.229
1130.421
1140.158
1150.646
1160.552
1170.137
1180.54
1190.334
120.627
1200.0527
1210.479
1220.9
1231
1240.0128
1250.113
1260.672
1270.521
1280.86
1290.317
130.106
1300.827
1310.249
1320.14
1330.0176
1340.544
1350.084
1360.64
1370.811
1380.337
1390.843
140.906
1400.184
1410.155
1420.678
1430.00472
1440.529
1450.57
1460.832
1470.151
1480.421
1490.433
150.0144
1500.538
1510.564
1520.316
1530.87
1540.998
1550.687
1560.0388
1570.593
1580.376
1590.252
160.109
1600.156
1610.604
1620.37
1630.484
1640.231
1650.696
1660.563
1670.0511
1680.749
1690.097
170.633
180.1
190.563
20.806
200.91
210.918
220.665
230.317
240.213
250.27
260.0193
270.507
280.929
290.11
30.13
300.947
310.864
320.924
330.0152
340.176
350.388
360.0223
370.164
380.411
390.686
40.144
400.027
410.849
420.176
430.176
440.0805
450.717
460.021
470.132
480.142
490.103
50.168
500.881
510.682
520.818
530.629
540.88
550.581
560.32
570.172
580.815
590.374
60.656
600.522
610.366
620.278
630.352
640.114
650.818
661.66553e-4
670.612
680.712
690.408
70.21
700.525
710.0558
720.988
730.871
740.397
750.23
760.611
770.378
780.453
790.826
80.0187
800.947
810.172
820.351
830.0303
840.618
850.45
860.359
870.239
880.785
890.2
90.991
900.516
910.317
920.794
930.407
940.0308
950.714
960.57
970.792
980.162
990.312



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13099


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103803 (serous adenocarcinoma cell line sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100658 (uterine adenocarcinoma cell sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

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