FF:12176-128I7: Difference between revisions

Latest revision as of 18:32, 4 June 2020

Name:	Whole blood (ribopure), donor090325, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs11075
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ribopure_minelute_cleanup-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005983

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11075		CAGE		DRX008532		DRR009404

Accession ID Hg19

Library id		BAM		CTSS
CNhs11075		DRZ000829		DRZ002214

Accession ID Hg38

Library id		BAM		CTSS
CNhs11075		DRZ012179		DRZ013564

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10019		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.0928
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0622
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0928
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.297
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0928
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0928
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0.827
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.169
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.125
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.407
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.374
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.586
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.47
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.291
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0928
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.169
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.595
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.116
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.291
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.29
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.007
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0928
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.426
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.11
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.612
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.125
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0928
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.577
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.169
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.708
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.637
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.234
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.0928
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.291
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.914
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.169
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.586
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11075

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.01537e-10
MA0003.1	MA0003.1	0.0873
MA0004.1	MA0004.1	0.656
MA0006.1	MA0006.1	0.759
MA0007.1	MA0007.1	0.9
MA0009.1	MA0009.1	0.043
MA0014.1	MA0014.1	0.847
MA0017.1	MA0017.1	0.0795
MA0018.2	MA0018.2	0.0261
MA0019.1	MA0019.1	0.23
MA0024.1	MA0024.1	0.0253
MA0025.1	MA0025.1	0.451
MA0027.1	MA0027.1	0.346
MA0028.1	MA0028.1	0.296
MA0029.1	MA0029.1	0.864
MA0030.1	MA0030.1	0.212
MA0031.1	MA0031.1	0.0028
MA0035.2	MA0035.2	0.00162
MA0038.1	MA0038.1	0.011
MA0039.2	MA0039.2	0.253
MA0040.1	MA0040.1	0.797
MA0041.1	MA0041.1	0.634
MA0042.1	MA0042.1	0.787
MA0043.1	MA0043.1	0.566
MA0046.1	MA0046.1	0.231
MA0047.2	MA0047.2	0.406
MA0048.1	MA0048.1	0.175
MA0050.1	MA0050.1	3.03356e-7
MA0051.1	MA0051.1	0.00892
MA0052.1	MA0052.1	0.00324
MA0055.1	MA0055.1	0.0612
MA0057.1	MA0057.1	0.767
MA0058.1	MA0058.1	0.719
MA0059.1	MA0059.1	0.698
MA0060.1	MA0060.1	2.41143e-4
MA0061.1	MA0061.1	0.0423
MA0062.2	MA0062.2	3.16202e-6
MA0065.2	MA0065.2	0.109
MA0066.1	MA0066.1	0.387
MA0067.1	MA0067.1	0.557
MA0068.1	MA0068.1	0.248
MA0069.1	MA0069.1	0.712
MA0070.1	MA0070.1	0.0189
MA0071.1	MA0071.1	0.651
MA0072.1	MA0072.1	0.584
MA0073.1	MA0073.1	0.486
MA0074.1	MA0074.1	0.915
MA0076.1	MA0076.1	0.0563
MA0077.1	MA0077.1	0.126
MA0078.1	MA0078.1	0.91
MA0079.2	MA0079.2	0.811
MA0080.2	MA0080.2	1.09049e-17
MA0081.1	MA0081.1	0.00149
MA0083.1	MA0083.1	0.197
MA0084.1	MA0084.1	0.537
MA0087.1	MA0087.1	0.968
MA0088.1	MA0088.1	0.125
MA0090.1	MA0090.1	0.00635
MA0091.1	MA0091.1	0.393
MA0092.1	MA0092.1	0.922
MA0093.1	MA0093.1	0.529
MA0099.2	MA0099.2	0.0873
MA0100.1	MA0100.1	0.996
MA0101.1	MA0101.1	0.96
MA0102.2	MA0102.2	0.00235
MA0103.1	MA0103.1	0.109
MA0104.2	MA0104.2	0.879
MA0105.1	MA0105.1	1.03512e-4
MA0106.1	MA0106.1	0.481
MA0107.1	MA0107.1	0.848
MA0108.2	MA0108.2	1.37801e-7
MA0111.1	MA0111.1	0.146
MA0112.2	MA0112.2	0.00356
MA0113.1	MA0113.1	0.845
MA0114.1	MA0114.1	0.406
MA0115.1	MA0115.1	0.874
MA0116.1	MA0116.1	2.64377e-6
MA0117.1	MA0117.1	0.646
MA0119.1	MA0119.1	0.575
MA0122.1	MA0122.1	0.285
MA0124.1	MA0124.1	0.664
MA0125.1	MA0125.1	0.185
MA0131.1	MA0131.1	0.8
MA0135.1	MA0135.1	0.697
MA0136.1	MA0136.1	1.27385e-24
MA0137.2	MA0137.2	0.371
MA0138.2	MA0138.2	0.682
MA0139.1	MA0139.1	0.117
MA0140.1	MA0140.1	9.40385e-10
MA0141.1	MA0141.1	0.82
MA0142.1	MA0142.1	0.971
MA0143.1	MA0143.1	0.868
MA0144.1	MA0144.1	0.245
MA0145.1	MA0145.1	0.295
MA0146.1	MA0146.1	0.00447
MA0147.1	MA0147.1	0.761
MA0148.1	MA0148.1	0.929
MA0149.1	MA0149.1	0.332
MA0150.1	MA0150.1	0.099
MA0152.1	MA0152.1	0.116
MA0153.1	MA0153.1	0.0675
MA0154.1	MA0154.1	0.00374
MA0155.1	MA0155.1	0.905
MA0156.1	MA0156.1	1.41001e-18
MA0157.1	MA0157.1	0.00547
MA0159.1	MA0159.1	0.193
MA0160.1	MA0160.1	0.673
MA0162.1	MA0162.1	0.548
MA0163.1	MA0163.1	5.45462e-7
MA0164.1	MA0164.1	0.545
MA0258.1	MA0258.1	0.027
MA0259.1	MA0259.1	0.364

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11075

Novel motif	Logo	P-value
1	1	0.162
10	10	0.0355
100	100	0.72
101	101	0.203
102	102	0.84
103	103	0.263
104	104	0.64
105	105	0.21
106	106	0.0809
107	107	0.737
108	108	0.81
109	109	0.138
11	11	0.105
110	110	0.386
111	111	0.26
112	112	0.185
113	113	0.142
114	114	0.0952
115	115	0.276
116	116	0.806
117	117	0.016
118	118	0.472
119	119	0.392
12	12	0.63
120	120	0.576
121	121	0.817
122	122	0.421
123	123	0.00626
124	124	0.115
125	125	0.172
126	126	0.329
127	127	0.409
128	128	0.0724
129	129	0.561
13	13	0.802
130	130	0.544
131	131	0.783
132	132	0.589
133	133	0.686
134	134	0.93
135	135	0.436
136	136	0.919
137	137	0.0105
138	138	0.0883
139	139	0.0326
14	14	0.15
140	140	0.939
141	141	0.41
142	142	0.652
143	143	0.00311
144	144	0.65
145	145	0.195
146	146	0.705
147	147	0.0672
148	148	0.164
149	149	0.436
15	15	0.0807
150	150	0.97
151	151	0.21
152	152	0.621
153	153	0.595
154	154	0.78
155	155	0.178
156	156	0.695
157	157	0.14
158	158	0.271
159	159	0.152
16	16	0.545
160	160	0.617
161	161	0.242
162	162	0.69
163	163	0.378
164	164	0.235
165	165	0.0704
166	166	0.845
167	167	0.809
168	168	0.104
169	169	0.0271
17	17	0.512
18	18	0.615
19	19	0.468
2	2	0.304
20	20	0.698
21	21	0.34
22	22	0.348
23	23	0.22
24	24	0.103
25	25	0.224
26	26	0.238
27	27	0.0801
28	28	0.453
29	29	0.374
3	3	0.0573
30	30	0.667
31	31	0.614
32	32	0.411
33	33	0.726
34	34	0.297
35	35	0.168
36	36	0.251
37	37	0.178
38	38	0.405
39	39	0.986
4	4	0.765
40	40	0.444
41	41	0.193
42	42	0.17
43	43	0.193
44	44	0.362
45	45	0.636
46	46	0.139
47	47	0.16
48	48	0.257
49	49	0.113
5	5	0.23
50	50	0.994
51	51	0.489
52	52	0.637
53	53	0.0502
54	54	0.357
55	55	0.0568
56	56	0.261
57	57	0.504
58	58	0.0579
59	59	0.121
6	6	0.769
60	60	0.12
61	61	0.223
62	62	0.0225
63	63	0.528
64	64	0.38
65	65	0.253
66	66	0.533
67	67	0.395
68	68	0.448
69	69	0.512
7	7	0.196
70	70	0.0612
71	71	0.093
72	72	0.195
73	73	0.413
74	74	0.609
75	75	0.0774
76	76	0.252
77	77	0.705
78	78	0.302
79	79	0.934
8	8	0.454
80	80	0.0225
81	81	0.263
82	82	0.0186
83	83	0.846
84	84	0.215
85	85	0.341
86	86	0.125
87	87	0.673
88	88	0.56
89	89	0.619
9	9	0.3
90	90	0.0154
91	91	0.334
92	92	0.0962
93	93	0.366
94	94	0.114
95	95	0.36
96	96	0.133
97	97	0.656
98	98	0.083
99	99	0.369

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11075

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000178,UBERON:0000926,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005983
+|HumanCAGEScanFiles=NCig10019;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Whole%2520blood%2520%28ribopure%29%252c%2520donor090325%252c%2520donation1.NCig10019.12176-128I7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Whole%2520blood%2520%28ribopure%29%252c%2520donor090325%252c%2520donation1.NCig10019.12176-128I7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Whole%2520blood%2520%28ribopure%29%252c%2520donor090325%252c%2520donation1.NCig10019.12176-128I7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Whole%2520blood%2520%28ribopure%29%252c%2520donor090325%252c%2520donation1.NCig10019.12176-128I7.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008532;DRR009404;DRZ000829;DRZ002214;DRZ012179;DRZ013564
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0010053,FF:0000004,FF:0000281
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:131623044..131623089,-!p1@MBNL3!2.73!2090.96!MBNL3;;chr11:47400078..47400106,-!p1@SPI1!2.48!301.60!SPI1;;chr12:54694653..54694672,-!p2@NFE2!2.29!193.44!NFE2;;chrX:131623026..131623039,-!p5@MBNL3!2.26!180.58!MBNL3;;chr2:68592406..68592424,+!p1@PLEK!2.25!177.01!PLEK;;chrX:131622958..131622978,-!p3@MBNL3!2.17!184.39!MBNL3;;chrX:131622988..131623006,-!p8@MBNL3!2.14!137.94!MBNL3;;chr12:54694758..54694805,-!p1@NFE2!2.13!159.14!NFE2;;chrX:70315688..70315709,+!p1@FOXO4!1.96!200.83!FOXO4;;chr7:28220506..28220552,-!p3@JAZF1!1.86!71.23!JAZF1;;chr12:54694807..54694832,-!p3@NFE2!1.85!69.33!NFE2;;chr2:70142232..70142251,+!p1@MXD1!1.84!368.54!MXD1;;chr7:28220354..28220441,-!p1@JAZF1!1.83!967.70!JAZF1;;chr16:85932760..85932775,+!p1@IRF8!1.76!56.22!IRF8;;chr5:133451294..133451310,+!p2@TCF7!1.76!55.98!TCF7;;chr10:51572408..51572454,+!p3@NCOA4!1.74!298.98!NCOA4;;chr7:50343634..50343717,+!p2@IKZF1!1.72!50.98!IKZF1;;chr3:128212033..128212051,-!p1@GATA2!1.71!50.51!GATA2;;chr10:51572339..51572376,+!p4@NCOA4!1.70!106.97!NCOA4;;chr17:45810594..45810608,+!p1@TBX21!1.69!48.36!TBX21;;chr4:109087445..109087463,-!p1@LEF1!1.67!45.98!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.66!45.03!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.65!114.35!AKNA;;chr10:51585449..51585487,+!p6@NCOA4!1.63!41.45!NCOA4;;chr2:231090433..231090469,+!p1@SP140!1.61!39.31!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.54!61.94!RUNX3;;chr3:141748010..141748030,-!p8@TFDP2!1.54!33.35!TFDP2;;chr3:63953435..63953499,+!p1@ATXN7!1.53!32.64!ATXN7;;chr17:37934365..37934387,-!p2@IKZF3!1.53!32.64!IKZF3;;chr2:148778973..148779035,+!p3@MBD5!1.51!78.62!MBD5;;chr19:50922187..50922204,+!p1@SPIB!1.51!31.21!SPIB;;chr2:100759010..100759035,-!p1@AFF3!1.50!30.49!AFF3;;chr6:391743..391759,+!p1@IRF4!1.49!29.78!IRF4;;chr20:56195474..56195506,-!p1@ZBP1!1.47!28.35!ZBP1;;chr5:133450365..133450444,+!p1@TCF7!1.46!121.74!TCF7;;chr11:111249993..111250006,-!p1@POU2AF1!1.46!28.11!POU2AF1;;chrY:21906594..21906622,-!p1@KDM5D!1.46!27.87!KDM5D;;chr3:27763807..27763822,-!p1@EOMES!1.45!26.92!EOMES;;chr2:192015701..192015743,-!p1@STAT4!1.43!35.50!STAT4;;chr11:47400062..47400077,-!p2@SPI1!1.43!25.73!SPI1;;chr19:13213511..13213545,-!p2@LYL1!1.41!26.92!LYL1;;chr21:34442439..34442455,+!p1@OLIG1!1.41!24.78!OLIG1;;chr12:54778471..54778528,-!p1@ZNF385A!1.40!24.06!ZNF385A;;chr20:50159198..50159299,-!p1@NFATC2!1.38!33.11!NFATC2;;chr2:68592394..68592405,+!p2@PLEK!1.37!22.63!PLEK;;chr7:28725715..28725727,+!p3@CREB5!1.36!25.97!CREB5;;chr11:47399996..47400014,-!p4@SPI1!1.36!22.16!SPI1;;chr2:231090471..231090504,+!p2@SP140!1.35!21.20!SP140;;chr19:12998003..12998021,-!p1@KLF1!1.34!20.96!KLF1;;chr3:187463179..187463201,-!p2@BCL6!1.33!82.90!BCL6;;chr2:192015750..192015793,-!p2@STAT4!1.33!27.16!STAT4;;chr4:185395633..185395651,-!p2@IRF2!1.30!30.49!IRF2;;chr6:144385698..144385742,-!p2@PLAGL1!1.30!23.11!PLAGL1;;chr19:16435625..16435682,+!p1@KLF2!1.29!573.19!KLF2;;chr10:111985713..111985774,+!p2@MXI1!1.29!171.77!MXI1;;chr10:51585430..51585448,+!p7@NCOA4!1.28!18.11!NCOA4;;chr7:50344251..50344288,+!p3@IKZF1!1.28!17.87!IKZF1;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.30!FOXP1;;chrX:48644984..48645005,+!p1@GATA1!1.25!16.68!GATA1;;chr12:54689552..54689574,-!p6@NFE2!1.25!16.68!NFE2;;chr11:47400045..47400060,-!p6@SPI1!1.24!16.44!SPI1;;chr2:100759037..100759058,-!p2@AFF3!1.24!16.20!AFF3;;chrX:106960285..106960299,-!p1@TSC22D3!1.23!422.15!TSC22D3;;chr11:128563948..128564003,+!p1@FLI1!1.23!190.35!FLI1;;chr13:41593425..41593480,-!p1@ELF1!1.23!100.53!ELF1;;chr11:47400032..47400043,-!p5@SPI1!1.22!15.72!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.22!15.49!SPI1;;chr3:71542615..71542644,-!p12@FOXP1!1.22!15.49!FOXP1;;chr6:106546808..106546833,+!p3@PRDM1!1.21!19.06!PRDM1;;chr7:28725740..28725778,+!p1@CREB5!1.19!127.69!CREB5;;chr2:70167296..70167306,+!p3@MXD1!1.19!22.16!MXD1;;chr14:75988771..75988826,+!p1@BATF!1.19!19.30!BATF;;chr7:50343895..50343936,+!p5@IKZF1!1.19!14.53!IKZF1;;chr5:88178983..88179012,-!p1@MEF2C!1.18!107.20!MEF2C;;chr3:18486354..18486377,-!p2@SATB1!1.18!17.63!SATB1;;chr17:38020392..38020477,-!p1@IKZF3!1.18!14.06!IKZF3;;chr2:208031943..208031978,-!p5@KLF7!1.17!18.34!KLF7;;chr6:91006518..91006570,-!p1@BACH2!1.16!30.73!BACH2;;chr5:176735063..176735088,-!p2@MXD3!1.16!13.34!MXD3;;chr16:3313791..3313834,+!p2@ZNF263!1.14!28.35!ZNF263;;chr4:106068026..106068084,+!p1@TET2!1.13!113.16!TET2;;chr15:60884706..60884743,-!p1@RORA!1.13!64.08!RORA;;chr11:128392273..128392308,-!p2@ETS1!1.13!52.65!ETS1;;chr4:185395191..185395226,-!p4@IRF2!1.13!17.63!IRF2;;chr5:133451347..133451358,+!p3@TCF7!1.13!12.39!TCF7;;chr1:47697965..47697991,-!p7@TAL1!1.13!12.39!TAL1;;chr21:36421535..36421610,-!p2@RUNX1!1.12!43.83!RUNX1;;chr16:88752889..88752921,-!p1@SNAI3!1.12!14.29!SNAI3;;chr4:109090075..109090095,-!p2@LEF1!1.12!12.15!LEF1;;chrX:131574281..131574293,-!p18@MBNL3!1.12!12.15!MBNL3;;chr10:111967345..111967422,+!p1@MXI1!1.11!191.54!MXI1;;chr5:142782823..142782854,-!p3@NR3C1!1.11!17.15!NR3C1;;chr5:131826457..131826514,-!p1@IRF1!1.09!446.21!IRF1;;chr12:54689532..54689551,-!p4@NFE2!1.09!11.20!NFE2;;chr1:8484007..8484061,-!p13@RERE!1.08!14.06!RERE;;chr17:38020557..38020572,-!p4@IKZF3!1.08!10.96!IKZF3;;chr19:13213662..13213686,-!p1@LYL1!1.07!15.96!LYL1;;chr9:135854091..135854159,+!p1@GFI1B!1.07!10.72!GFI1B;;chr20:56195525..56195556,-!p2@ZBP1!1.06!10.48!ZBP1;;chr7:115670804..115670825,-!p1@TFEC!1.06!10.48!TFEC;;chr7:50348268..50348366,+!p4@IKZF1!1.06!10.48!IKZF1;;chr10:51565239..51565263,+!p2@NCOA4!1.05!242.52!NCOA4;;chr2:145277640..145277771,-!p1@ZEB2!1.05!138.89!ZEB2;;chr2:70142189..70142223,+!p2@MXD1!1.05!74.09!MXD1;;chr17:17721569..17721574,-!p9@SREBF1!1.05!10.24!SREBF1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.04!16.44!PCBP2;;chr1:43148855..43148908,+!p4@YBX1!1.04!15.72!YBX1;;chr4:185395590..185395627,-!p3@IRF2!1.04!12.39!IRF2;;chr17:38497662..38497713,+!p4@RARA!1.04!11.67!RARA;;chr12:54694738..54694749,-!p5@NFE2!1.04!10.01!NFE2;;chr7:149470641..149470694,-!p1@ZNF467!1.03!44.55!ZNF467;;chr10:8096631..8096660,+!p1@GATA3!1.03!11.67!GATA3;;chr6:106546731..106546755,+!p5@PRDM1!1.03!9.77!PRDM1;;chr1:23857325..23857416,-!p2@E2F2!1.02!11.20!E2F2;;chr19:19779619..19779670,+!p1@ZNF101!1.01!26.68!ZNF101;;chr17:38020516..38020544,-!p5@IKZF3!1.01!9.29!IKZF3;;chr12:10875831..10876025,-!p1@CSDA!1.00!759.01!CSDA;;chr3:18480217..18480239,-!p3@SATB1!1.00!9.05!SATB1;;chr10:8096772..8096787,+!p2@GATA3!0.99!10.48!GATA3;;chr2:231084659..231084721,-!p1@SP110!0.98!206.55!SP110;;chr1:26697243..26697258,-!p1@ZNF683!0.98!8.58!ZNF683;;chr2:60780607..60780624,-!p2@BCL11A!0.97!25.97!BCL11A;;chr9:37034186..37034216,-!p2@PAX5!0.97!8.34!PAX5;;chr12:54691711..54691725,-!p7@NFE2!0.96!8.10!NFE2;;chr3:71179699..71179744,-!p2@FOXP1!0.95!60.75!FOXP1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.95!53.60!ZNF580;;chr3:141820622..141820635,-!p5@TFDP2!0.95!14.53!TFDP2;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.86!ZFY;;chr9:137217986..137218049,+!p3@RXRA!0.94!22.63!RXRA;;chrX:106960180..106960197,-!p2@TSC22D3!0.92!29.30!TSC22D3;;chr19:42636586..42636607,-!p1@POU2F2!0.92!20.96!POU2F2;;chr9:32550965..32551031,-!p4@TOPORS!0.92!11.67!TOPORS;;chrX:107019163..107019179,-!p7@TSC22D3!0.92!8.58!TSC22D3;;chr1:47697881..47697910,-!p4@TAL1!0.92!7.39!TAL1;;chr21:34442540..34442560,+!p2@OLIG1!0.92!7.39!OLIG1;;chr7:137620650..137620677,-!p3@CREB3L2!0.92!7.39!CREB3L2;;chr9:117160738..117160782,-!p2@AKNA!0.91!30.73!AKNA;;chr5:88179017..88179046,-!p2@MEF2C!0.90!28.83!MEF2C;;chr7:149470540..149470596,-!p2@ZNF467!0.90!9.29!ZNF467;;chr4:109089573..109089585,-!p8@LEF1!0.90!6.91!LEF1;;chr1:47695003..47695042,-!p2@TAL1!0.90!6.91!TAL1;;chr1:92951607..92951661,-!p1@GFI1!0.90!6.91!GFI1;;chr9:117150303..117150312,-!p3@AKNA!0.89!8.81!AKNA;;chr11:128392085..128392232,-!p1@ETS1!0.87!228.94!ETS1;;chr2:28618532..28618610,+!p4@FOSL2!0.87!11.44!FOSL2;;chr3:71542651..71542683,-!p22@FOXP1!0.87!6.43!FOXP1;;chr4:109089901..109089930,-!p3@LEF1!0.87!6.43!LEF1;;chr16:89787937..89787971,+!p1@ZNF276!0.86!17.15!ZNF276;;chr17:37934204..37934241,-!p3@IKZF3!0.86!6.19!IKZF3;;chrY:21906761..21906810,-!p2@KDM5D!0.86!6.19!KDM5D;;chr20:52226313..52226350,-!p3@ZNF217!0.86!6.19!ZNF217;;chr2:100758991..100759009,-!p3@AFF3!0.86!6.19!AFF3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.85!49.79!ZCCHC6;;chr16:79634624..79634642,-!p1@MAF!0.85!25.49!MAF;;chr17:38498402..38498445,+!p3@RARA!0.85!22.87!RARA;;chr4:57522166..57522260,-!p2@HOPX!0.85!7.15!HOPX;;chr4:38665769..38665801,+!p2@KLF3!0.84!57.65!KLF3;;chrX:101186981..101187030,-!p1@ZMAT1!0.84!20.49!ZMAT1;;chrX:49121165..49121179,-!p1@FOXP3!0.84!5.96!FOXP3;;chr5:158526756..158526797,-!p3@EBF1!0.84!5.96!EBF1;;chr6:108881012..108881034,+!p3@FOXO3!0.83!21.92!FOXO3;;chr17:38498594..38498661,+!p2@RARA!0.83!20.49!RARA;;chr6:135516877..135516900,+!p5@MYB!0.83!5.72!MYB;;chr6:15246200..15246214,+!p2@JARID2!0.82!16.44!JARID2;;chr8:60031619..60031676,-!p1@TOX!0.82!12.63!TOX;;chr14:64970670..64970712,-!p3@ZBTB25!0.82!12.63!ZBTB25;;chr10:31288398..31288455,-!p2@ZNF438!0.82!6.67!ZNF438;;chr9:3525727..3525828,-!p2@RFX3!0.81!14.77!RFX3;;chrX:107018836..107018862,-!p8@TSC22D3!0.81!5.48!TSC22D3;;chr14:65568389..65568408,-!p4@MAX!0.81!5.48!MAX;;chr19:13213555..13213568,-!p5@LYL1!0.81!5.48!LYL1;;chr21:36421147..36421193,-!p10@RUNX1!0.81!5.48!RUNX1;;chr1:61548225..61548299,+!p1@NFIA!0.80!75.76!NFIA;;chr16:68119324..68119364,+!p1@NFATC3!0.80!25.49!NFATC3;;chr1:10754477..10754517,-!p1@CASZ1!0.80!9.29!CASZ1;;chr2:113057415..113057477,+!p3@ZC3H6!0.80!7.15!ZC3H6;;chr2:60781201..60781258,-!p3@BCL11A!0.80!5.24!BCL11A;;chr19:45251395..45251432,+!p8@BCL3!0.80!5.24!BCL3;;chr12:6782377..6782382,-!p15@ZNF384!0.80!5.24!ZNF384;;chr8:71316021..71316068,-!p1@NCOA2!0.79!52.17!NCOA2;;chr2:208031542..208031595,-!p2@KLF7!0.79!39.31!KLF7;;chr3:18466787..18466839,-!p1@SATB1!0.79!24.78!SATB1;;chr14:65569101..65569119,-!p3@MAX!0.79!17.39!MAX;;chr19:19729477..19729542,-!p1@PBX4!0.79!11.67!PBX4;;chr6:45390300..45390335,+!p4@RUNX2!0.79!8.34!RUNX2;;chr19:38085768..38085821,+!p1@ZNF540!0.79!8.10!ZNF540;;chr19:53073532..53073551,+!p1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation1.CNhs11075.12176-128I7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation1.CNhs11075.12176-128I7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation1.CNhs11075.12176-128I7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation1.CNhs11075.12176-128I7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090325%252c%2520donation1.CNhs11075.12176-128I7.hg38.nobarcode.ctss.bed.gz
 |id=FF:12176-128I7
 |is_a=EFO:0002091;;FF:0000002;;FF:0000281
 |is_obsolete=
+|library_id=CNhs11075
+|library_id_phase_based=2:CNhs11075
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12176
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12176
 |name=Whole blood (ribopure), donor090325, donation1
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=NCig10019,,,
 |profile_hcage=CNhs11075,LSID723,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=128
 |rna_catalog_number=
@@ Line 59: / Line 79: @@
 |rna_weight_ug=5.9004
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=GATA6:3.01579400363;ETS1,2:2.43030851762;FOXO1,3,4:2.3183075348;DMAP1_NCOR{1,2}_SMARC:2.31037050691;ELF1,2,4:2.22645511389;SPI1:2.19899136762;SPIB:2.19663025218;T:2.14189196974;FOXD3:2.1385831428;RUNX1..3:1.91380888239;FOX{D1,D2}:1.81604272595;NKX2-2,8:1.59081332413;FOX{F1,F2,J1}:1.53753921115;STAT5{A,B}:1.51532153876;CDX1,2,4:1.47139778774;FOXP3:1.44564720115;IKZF2:1.44428453183;FOXA2:1.36834265813;IRF7:1.36523705343;NANOG{mouse}:1.35300812099;IRF1,2:1.34138415539;TOPORS:1.3097026067;POU5F1:1.25997017138;STAT1,3:1.22951955022;TLX2:1.2171863635;SPZ1:1.17207817876;BPTF:1.11049549036;TGIF1:0.974032674346;FOXP1:0.942483655044;CEBPA,B_DDIT3:0.936684308839;FOX{I1,J2}:0.929775868789;ALX1:0.91071332144;TFAP4:0.879700836537;PITX1..3:0.812348452172;FOXN1:0.799849722649;HOXA9_MEIS1:0.779271433855;POU2F1..3:0.773454644288;EP300:0.772516038376;PDX1:0.750785436077;OCT4_SOX2{dimer}:0.67965359779;SREBF1,2:0.659750915607;NKX3-1:0.656557661281;HBP1_HMGB_SSRP1_UBTF:0.604096439056;SMAD1..7,9:0.559473149029;NFE2L2:0.558797325298;PAX3,7:0.549013613696;NFATC1..3:0.458025286903;ZNF148:0.450898814024;EVI1:0.445373293194;MYFfamily:0.435501787379;ZEB1:0.416079427177;RXRA_VDR{dimer}:0.397709811782;HMX1:0.393672611932;STAT2,4,6:0.350850721575;NKX2-1,4:0.347574517425;CRX:0.347556668151;FOXQ1:0.347457369928;PAX2:0.331519012994;HMGA1,2:0.298111481565;DBP:0.249672767222;MYOD1:0.246388196584;ZNF423:0.221388434293;RBPJ:0.220730730851;RREB1:0.201152905966;RFX2..5_RFXANK_RFXAP:0.201048518635;SNAI1..3:0.194808768744;NKX6-1,2:0.15637632306;NFIL3:0.138703177061;MZF1:0.134925396503;ZBTB16:0.116586531842;TFCP2:0.114127289225;RORA:0.104660869584;BREu{core}:0.0981422852319;CUX2:0.077537327292;LMO2:0.0712847264938;NFKB1_REL_RELA:0.0278379354809;AIRE:0.00838623091158;ATF5_CREB3:-0.018079867727;NR1H4:-0.032207663101;TAL1_TCF{3,4,12}:-0.0969414948274;POU1F1:-0.111047361611;GATA4:-0.116830549402;HLF:-0.119445236898;MYB:-0.132408208316;ELK1,4_GABP{A,B1}:-0.139624284367;MAZ:-0.154556125929;NKX3-2:-0.172301187585;XCPE1{core}:-0.175818970089;ZNF238:-0.184102835968;VSX1,2:-0.208405598875;CREB1:-0.214920110062;GLI1..3:-0.24273903861;NFIX:-0.286412718068;ADNP_IRX_SIX_ZHX:-0.300811954882;PPARG:-0.312691100996;ZNF143:-0.344829741287;NR6A1:-0.360499057457;NFE2L1:-0.395979728959;NFE2:-0.40797953547;ATF2:-0.408787470346;PRRX1,2:-0.437714131621;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.438976649719;SOX5:-0.441321043004;POU6F1:-0.450039487732;HNF4A_NR2F1,2:-0.463670929339;NHLH1,2:-0.473673927573;YY1:-0.480834033528;SRF:-0.484481897323;ZFP161:-0.492968761256;SP1:-0.50661276305;NRF1:-0.506617993828;PRDM1:-0.508724302098;LEF1_TCF7_TCF7L1,2:-0.523939212126;HES1:-0.534735805083;NR3C1:-0.555113404488;AR:-0.56530241787;BACH2:-0.579250504767;HNF1A:-0.601350136133;PAX6:-0.621185139533;REST:-0.626573511928;FOSL2:-0.627308904638;KLF4:-0.641606936092;ALX4:-0.651060920723;PATZ1:-0.690905243206;MAFB:-0.717147621256;FOS_FOS{B,L1}_JUN{B,D}:-0.71751225376;EGR1..3:-0.719138001281;TBX4,5:-0.736670877965;MTF1:-0.7394082686;NFY{A,B,C}:-0.783367425972;RFX1:-0.802491063908;ZNF384:-0.813183164637;LHX3,4:-0.817269152587;GCM1,2:-0.830535564119;FOXL1:-0.841278951483;NKX2-3_NKX2-5:-0.85390343493;ATF4:-0.854829072752;GTF2I:-0.858071941889;MTE{core}:-0.859925410343;NANOG:-0.888141427678;NR5A1,2:-0.889451650795;ARID5B:-0.897761734418;HOX{A6,A7,B6,B7}:-0.921301059441;MEF2{A,B,C,D}:-0.92331461509;PBX1:-0.927341834782;HIF1A:-0.928442544676;TFAP2B:-0.930035525943;MED-1{core}:-0.942698513825;E2F1..5:-0.945983390551;JUN:-0.962833544386;SOX2:-1.01817473187;HIC1:-1.0269433731;AHR_ARNT_ARNT2:-1.04833148032;ESR1:-1.08839970206;PAX5:-1.1363562353;MYBL2:-1.14968421436;SOX{8,9,10}:-1.15372626732;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.18402947474;TFAP2{A,C}:-1.2023109144;PAX4:-1.21756440338;GZF1:-1.28541576838;TLX1..3_NFIC{dimer}:-1.29436817751;GFI1:-1.30166663653;EN1,2:-1.3104033434;EBF1:-1.31301467142;RXR{A,B,G}:-1.36256178749;HAND1,2:-1.36720041014;ZBTB6:-1.39682726631;GTF2A1,2:-1.40128417595;UFEwm:-1.40271645127;TBP:-1.4283732085;GFI1B:-1.47627571875;ONECUT1,2:-1.48734557428;FOXM1:-1.50832079286;POU3F1..4:-1.51597621855;CDC5L:-1.56546335106;HSF1,2:-1.57433288868;TP53:-1.62271870626;XBP1:-1.65967688306;ATF6:-1.66156663685;TEAD1:-1.68920619387;bHLH_family:-1.81316813811;TEF:-1.86326707664;TFDP1:-1.89560227981;ZIC1..3:-1.8980620076;PAX1,9:-1.94898776303;PAX8:-2.00735223685;HOX{A5,B5}:-2.05871221459;HOX{A4,D4}:-2.08102656786;SOX17:-2.13121940999;ESRRA:-2.47828909443;IKZF1:-2.92520229591
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12176-128I7;search_select_hide=table117:FF:12176-128I7
 }}

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FF:12176-128I7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:32, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0