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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004845
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004845
|accession_numbers=CAGE;DRX008403;DRR009275;DRZ000700;DRZ002085;DRZ012050;DRZ013435
|accession_numbers_RNASeq=sRNA-Seq;DRX037061;DRR041427;DRZ007069
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000178,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000178,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000226,CL:0000080,CL:0000842
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000226,CL:0000080,CL:0000842
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.35!224.98!PLEK;;chr1:25256756..25256774,-!p1@RUNX3!2.17!268.21!RUNX3;;chr11:47400078..47400106,-!p1@SPI1!2.17!145.36!SPI1;;chr2:157189180..157189290,-!p1@NR4A2!2.05!546.23!NR4A2;;chr16:85932760..85932775,+!p1@IRF8!1.97!92.11!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!1.93!83.99!ZNF385A;;chr19:54058073..54058088,+!p1@ZNF331!1.91!80.58!ZNF331;;chr19:54041669..54041697,+!p2@ZNF331!1.89!77.38!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.85!69.05!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.83!89.44!STAT4;;chr20:50159198..50159299,-!p1@NFATC2!1.79!87.84!NFATC2;;chr17:45810594..45810608,+!p1@TBX21!1.79!61.15!TBX21;;chr5:133451294..133451310,+!p2@TCF7!1.78!58.91!TCF7;;chr9:102584262..102584276,+!p1@NR4A3!1.76!123.16!NR4A3;;chr9:117150254..117150271,-!p1@AKNA!1.69!128.07!AKNA;;chr14:35873947..35873965,-!p1@NFKBIA!1.63!2494.65!NFKBIA;;chr5:133450365..133450444,+!p1@TCF7!1.63!182.82!TCF7;;chr3:63953435..63953499,+!p1@ATXN7!1.63!41.41!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!1.58!82.50!BACH2;;chr11:47400062..47400077,-!p2@SPI1!1.55!34.15!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.54!33.62!SPI1;;chr6:391743..391759,+!p1@IRF4!1.54!33.62!IRF4;;chr7:50344289..50344323,+!p1@IKZF1!1.54!33.51!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.53!32.98!KDM5D;;chr3:39195075..39195088,-!p1@CSRNP1!1.52!195.42!CSRNP1;;chr2:231090433..231090469,+!p1@SP140!1.52!32.45!SP140;;chr8:123793988..123794016,+!p1@ZHX2!1.50!52.94!ZHX2;;chr4:109087445..109087463,-!p1@LEF1!1.49!29.88!LEF1;;chr19:45971246..45971265,+!p1@FOSB!1.48!523.71!FOSB;;chr15:60884706..60884743,-!p1@RORA!1.48!146.86!RORA;;chr9:102584241..102584261,+!p4@NR4A3!1.47!43.65!NR4A3;;chr6:106546808..106546833,+!p3@PRDM1!1.47!35.86!PRDM1;;chr19:12902289..12902307,+!p1@JUNB!1.46!6111.86!JUNB;;chr2:145277640..145277771,-!p1@ZEB2!1.45!350.39!ZEB2;;chr14:75745523..75745537,+!p1@FOS!1.44!3053.90!FOS;;chr3:101546827..101546847,+!p2@NFKBIZ!1.43!36.39!NFKBIZ;;chr12:72056800..72056834,+!p1@THAP2!1.42!34.15!THAP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.40!616.78!TSC22D3;;chr10:35484053..35484076,+!p1@CREM!1.39!57.21!CREM;;chr9:102584159..102584174,+!p2@NR4A3!1.39!41.62!NR4A3;;chr19:36391434..36391450,-!p1@NFKBID!1.38!44.61!NFKBID;;chr19:16435625..16435682,+!p1@KLF2!1.37!700.77!KLF2;;chr2:61108695..61108753,+!p1@REL!1.37!149.74!REL;;chr14:35872453..35872485,-!p2@NFKBIA!1.37!53.90!NFKBIA;;chr3:71355163..71355209,-!p5@FOXP1!1.37!31.16!FOXP1;;chr19:54041645..54041661,+!p5@ZNF331!1.37!22.52!ZNF331;;chr19:50922187..50922204,+!p1@SPIB!1.36!21.88!SPIB;;chr20:56195474..56195506,-!p1@ZBP1!1.36!21.88!ZBP1;;chrX:106960180..106960197,-!p2@TSC22D3!1.34!77.48!TSC22D3;;chr14:35872962..35873025,-!p3@NFKBIA!1.34!51.98!NFKBIA;;chr12:52445218..52445237,+!p1@NR4A1!1.33!246.75!NR4A1;;chr4:103422499..103422632,+!p1@NFKB1!1.32!402.15!NFKB1;;chr20:39317868..39317884,-!p1@MAFB!1.32!226.69!MAFB;;chr3:18486354..18486377,-!p2@SATB1!1.32!24.65!SATB1;;chr7:115670804..115670825,-!p1@TFEC!1.32!19.96!TFEC;;chr11:47399996..47400014,-!p4@SPI1!1.32!19.85!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.30!19.10!PLEK;;chr3:39195037..39195069,-!p2@CSRNP1!1.29!111.32!CSRNP1;;chr2:192015750..192015793,-!p2@STAT4!1.29!24.65!STAT4;;chr2:43453734..43453751,-!p1@ZFP36L2!1.27!1837.10!ZFP36L2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.27!893.52!NFKBIZ;;chr5:131826457..131826514,-!p1@IRF1!1.26!657.66!IRF1;;chr6:106534192..106534224,+!p1@PRDM1!1.26!47.92!PRDM1;;chr10:8096631..8096660,+!p1@GATA3!1.24!19.96!GATA3;;chr12:54778351..54778378,-!p6@ZNF385A!1.24!16.22!ZNF385A;;chr2:70142232..70142251,+!p1@MXD1!1.23!89.22!MXD1;;chrX:106960221..106960236,-!p3@TSC22D3!1.22!42.48!TSC22D3;;chr6:91006575..91006602,-!p2@BACH2!1.22!23.27!BACH2;;chr2:61108878..61108891,+!p5@REL!1.22!15.69!REL;;chr2:157189617..157189667,-!p4@NR4A2!1.22!15.58!NR4A2;;chr19:45252008..45252024,+!p2@BCL3!1.21!50.27!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.21!15.16!IKZF1;;chr6:12011943..12012015,+!p2@HIVEP1!1.20!47.28!HIVEP1;;chr3:5020939..5020952,+!p2@BHLHE40!1.20!46.00!BHLHE40;;chr9:102584128..102584144,+!p3@NR4A3!1.20!28.28!NR4A3;;chr8:67525443..67525459,-!p2@MYBL1!1.20!22.20!MYBL1;;chr3:71542615..71542644,-!p12@FOXP1!1.20!14.73!FOXP1;;chr10:8096772..8096787,+!p2@GATA3!1.19!17.29!GATA3;;chr2:231090471..231090504,+!p2@SP140!1.19!14.62!SP140;;chrY:2803415..2803468,+!p1@ZFY!1.19!14.62!ZFY;;chr6:106534230..106534254,+!p2@PRDM1!1.18!35.65!PRDM1;;chr8:81397820..81397836,+!p2@ZBTB10!1.18!17.72!ZBTB10;;chr6:106546834..106546850,+!p4@PRDM1!1.18!14.19!PRDM1;;chr9:102584278..102584285,+!p5@NR4A3!1.18!14.09!NR4A3;;chr3:23986824..23986848,+!p2@NR1D2!1.17!76.20!NR1D2;;chr21:36421535..36421610,-!p2@RUNX1!1.17!48.45!RUNX1;;chr14:35872926..35872951,-!p4@NFKBIA!1.17!19.42!NFKBIA;;chr2:61108808..61108821,+!p3@REL!1.17!17.29!REL;;chr13:74707894..74707947,-!p6@KLF12!1.17!15.26!KLF12;;chr11:47400032..47400043,-!p5@SPI1!1.16!13.45!SPI1;;chr4:109090075..109090095,-!p2@LEF1!1.16!13.45!LEF1;;chr2:97202480..97202499,+!p1@ARID5A!1.15!131.92!ARID5A;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|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.35!224.98!PLEK;;chr1:25256756..25256774,-!p1@RUNX3!2.17!268.21!RUNX3;;chr11:47400078..47400106,-!p1@SPI1!2.17!145.36!SPI1;;chr2:157189180..157189290,-!p1@NR4A2!2.05!546.23!NR4A2;;chr16:85932760..85932775,+!p1@IRF8!1.97!92.11!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!1.93!83.99!ZNF385A;;chr19:54058073..54058088,+!p1@ZNF331!1.91!80.58!ZNF331;;chr19:54041669..54041697,+!p2@ZNF331!1.89!77.38!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.85!69.05!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.83!89.44!STAT4;;chr20:50159198..50159299,-!p1@NFATC2!1.79!87.84!NFATC2;;chr17:45810594..45810608,+!p1@TBX21!1.79!61.15!TBX21;;chr5:133451294..133451310,+!p2@TCF7!1.78!58.91!TCF7;;chr9:102584262..102584276,+!p1@NR4A3!1.76!123.16!NR4A3;;chr9:117150254..117150271,-!p1@AKNA!1.69!128.07!AKNA;;chr14:35873947..35873965,-!p1@NFKBIA!1.63!2494.65!NFKBIA;;chr5:133450365..133450444,+!p1@TCF7!1.63!182.82!TCF7;;chr3:63953435..63953499,+!p1@ATXN7!1.63!41.41!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!1.58!82.50!BACH2;;chr11:47400062..47400077,-!p2@SPI1!1.55!34.15!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.54!33.62!SPI1;;chr6:391743..391759,+!p1@IRF4!1.54!33.62!IRF4;;chr7:50344289..50344323,+!p1@IKZF1!1.54!33.51!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.53!32.98!KDM5D;;chr3:39195075..39195088,-!p1@CSRNP1!1.52!195.42!CSRNP1;;chr2:231090433..231090469,+!p1@SP140!1.52!32.45!SP140;;chr8:123793988..123794016,+!p1@ZHX2!1.50!52.94!ZHX2;;chr4:109087445..109087463,-!p1@LEF1!1.49!29.88!LEF1;;chr19:45971246..45971265,+!p1@FOSB!1.48!523.71!FOSB;;chr15:60884706..60884743,-!p1@RORA!1.48!146.86!RORA;;chr9:102584241..102584261,+!p4@NR4A3!1.47!43.65!NR4A3;;chr6:106546808..106546833,+!p3@PRDM1!1.47!35.86!PRDM1;;chr19:12902289..12902307,+!p1@JUNB!1.46!6111.86!JUNB;;chr2:145277640..145277771,-!p1@ZEB2!1.45!350.39!ZEB2;;chr14:75745523..75745537,+!p1@FOS!1.44!3053.90!FOS;;chr3:101546827..101546847,+!p2@NFKBIZ!1.43!36.39!NFKBIZ;;chr12:72056800..72056834,+!p1@THAP2!1.42!34.15!THAP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.40!616.78!TSC22D3;;chr10:35484053..35484076,+!p1@CREM!1.39!57.21!CREM;;chr9:102584159..102584174,+!p2@NR4A3!1.39!41.62!NR4A3;;chr19:36391434..36391450,-!p1@NFKBID!1.38!44.61!NFKBID;;chr19:16435625..16435682,+!p1@KLF2!1.37!700.77!KLF2;;chr2:61108695..61108753,+!p1@REL!1.37!149.74!REL;;chr14:35872453..35872485,-!p2@NFKBIA!1.37!53.90!NFKBIA;;chr3:71355163..71355209,-!p5@FOXP1!1.37!31.16!FOXP1;;chr19:54041645..54041661,+!p5@ZNF331!1.37!22.52!ZNF331;;chr19:50922187..50922204,+!p1@SPIB!1.36!21.88!SPIB;;chr20:56195474..56195506,-!p1@ZBP1!1.36!21.88!ZBP1;;chrX:106960180..106960197,-!p2@TSC22D3!1.34!77.48!TSC22D3;;chr14:35872962..35873025,-!p3@NFKBIA!1.34!51.98!NFKBIA;;chr12:52445218..52445237,+!p1@NR4A1!1.33!246.75!NR4A1;;chr4:103422499..103422632,+!p1@NFKB1!1.32!402.15!NFKB1;;chr20:39317868..39317884,-!p1@MAFB!1.32!226.69!MAFB;;chr3:18486354..18486377,-!p2@SATB1!1.32!24.65!SATB1;;chr7:115670804..115670825,-!p1@TFEC!1.32!19.96!TFEC;;chr11:47399996..47400014,-!p4@SPI1!1.32!19.85!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.30!19.10!PLEK;;chr3:39195037..39195069,-!p2@CSRNP1!1.29!111.32!CSRNP1;;chr2:192015750..192015793,-!p2@STAT4!1.29!24.65!STAT4;;chr2:43453734..43453751,-!p1@ZFP36L2!1.27!1837.10!ZFP36L2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.27!893.52!NFKBIZ;;chr5:131826457..131826514,-!p1@IRF1!1.26!657.66!IRF1;;chr6:106534192..106534224,+!p1@PRDM1!1.26!47.92!PRDM1;;chr10:8096631..8096660,+!p1@GATA3!1.24!19.96!GATA3;;chr12:54778351..54778378,-!p6@ZNF385A!1.24!16.22!ZNF385A;;chr2:70142232..70142251,+!p1@MXD1!1.23!89.22!MXD1;;chrX:106960221..106960236,-!p3@TSC22D3!1.22!42.48!TSC22D3;;chr6:91006575..91006602,-!p2@BACH2!1.22!23.27!BACH2;;chr2:61108878..61108891,+!p5@REL!1.22!15.69!REL;;chr2:157189617..157189667,-!p4@NR4A2!1.22!15.58!NR4A2;;chr19:45252008..45252024,+!p2@BCL3!1.21!50.27!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.21!15.16!IKZF1;;chr6:12011943..12012015,+!p2@HIVEP1!1.20!47.28!HIVEP1;;chr3:5020939..5020952,+!p2@BHLHE40!1.20!46.00!BHLHE40;;chr9:102584128..102584144,+!p3@NR4A3!1.20!28.28!NR4A3;;chr8:67525443..67525459,-!p2@MYBL1!1.20!22.20!MYBL1;;chr3:71542615..71542644,-!p12@FOXP1!1.20!14.73!FOXP1;;chr10:8096772..8096787,+!p2@GATA3!1.19!17.29!GATA3;;chr2:231090471..231090504,+!p2@SP140!1.19!14.62!SP140;;chrY:2803415..2803468,+!p1@ZFY!1.19!14.62!ZFY;;chr6:106534230..106534254,+!p2@PRDM1!1.18!35.65!PRDM1;;chr8:81397820..81397836,+!p2@ZBTB10!1.18!17.72!ZBTB10;;chr6:106546834..106546850,+!p4@PRDM1!1.18!14.19!PRDM1;;chr9:102584278..102584285,+!p5@NR4A3!1.18!14.09!NR4A3;;chr3:23986824..23986848,+!p2@NR1D2!1.17!76.20!NR1D2;;chr21:36421535..36421610,-!p2@RUNX1!1.17!48.45!RUNX1;;chr14:35872926..35872951,-!p4@NFKBIA!1.17!19.42!NFKBIA;;chr2:61108808..61108821,+!p3@REL!1.17!17.29!REL;;chr13:74707894..74707947,-!p6@KLF12!1.17!15.26!KLF12;;chr11:47400032..47400043,-!p5@SPI1!1.16!13.45!SPI1;;chr4:109090075..109090095,-!p2@LEF1!1.16!13.45!LEF1;;chr2:97202480..97202499,+!p1@ARID5A!1.15!131.92!ARID5A;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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000842;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor3.CNhs12002.11388-118C2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor3.CNhs12002.11388-118C2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor3.CNhs12002.11388-118C2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor3.CNhs12002.11388-118C2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Peripheral%2520Blood%2520Mononuclear%2520Cells%252c%2520donor3.CNhs12002.11388-118C2.hg38.nobarcode.ctss.bed.gz
|id=FF:11388-118C2
|id=FF:11388-118C2
|is_a=EFO:0002091;;FF:0000135
|is_a=EFO:0002091;;FF:0000135
|is_obsolete=
|is_obsolete=
|library_id=CNhs12002
|library_id_phase_based=2:CNhs12002
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11388
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.ACTTGA.11388
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11388
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.ACTTGA.11388
|name=Peripheral Blood Mononuclear Cells, donor3
|name=Peripheral Blood Mononuclear Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12002,LSID837,release011,COMPLETED
|profile_hcage=CNhs12002,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
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Line 59: Line 82:
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|rna_weight_ug=10
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|sample_age=46
|sample_category=primary cells
|sample_cell_catalog=N/A
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|sample_cell_line=
Line 81: Line 106:
|top_motifs=PAX3,7:3.00618570612;ETS1,2:2.83160872023;NFKB1_REL_RELA:2.80055860987;RUNX1..3:2.73121596299;SPI1:2.63976606098;SPIB:2.43342029018;PAX2:2.42596737591;ATF5_CREB3:2.34055939932;ATF4:2.23236494904;CREB1:2.15301038268;ELF1,2,4:1.96887715035;NFIL3:1.93893733008;FOS_FOS{B,L1}_JUN{B,D}:1.81147710931;BACH2:1.70619271693;RXRA_VDR{dimer}:1.70259733751;NANOG{mouse}:1.66221224243;NFATC1..3:1.6517417755;IRF1,2:1.64784583694;CEBPA,B_DDIT3:1.63692845273;MAFB:1.63458823966;HIF1A:1.62569468886;DMAP1_NCOR{1,2}_SMARC:1.59498747829;TGIF1:1.56754446028;FOSL2:1.53896413857;NFE2:1.52358226252;HLF:1.4798992947;JUN:1.41818156055;HMX1:1.40357229981;FOXN1:1.38313315983;FOX{D1,D2}:1.32416163891;T:1.28893187279;FOXO1,3,4:1.18085509366;TLX2:1.17055002923;FOXP3:1.06944152451;BREu{core}:0.97839517259;IRF7:0.953565958123;RORA:0.929059562358;EP300:0.92199758083;EGR1..3:0.80431888194;RFX2..5_RFXANK_RFXAP:0.729258518129;ATF6:0.698081389673;SREBF1,2:0.694272187959;PITX1..3:0.67613037312;BPTF:0.674626800115;NFE2L1:0.671286644759;ATF2:0.662315796579;STAT2,4,6:0.648873726716;IKZF2:0.641999374448;RBPJ:0.36947569922;PAX6:0.3323084541;SMAD1..7,9:0.318918413746;HMGA1,2:0.302278691486;FOX{F1,F2,J1}:0.283813096494;POU2F1..3:0.274685893838;NFE2L2:0.194955904162;NKX2-1,4:0.190067054353;MYFfamily:0.15294435014;SPZ1:0.122104218864;ESR1:0.0664846262652;ZBTB16:0.0112192750968;STAT1,3:0.0106563850168;FOXP1:0.00833502897151;GLI1..3:-0.0128632090486;TBX4,5:-0.0197794971486;MYB:-0.0556764119817;GATA4:-0.0965569434427;PAX8:-0.151425278354;GATA6:-0.180874237687;GCM1,2:-0.189946724384;TFAP4:-0.206372371004;SOX2:-0.215221628084;TOPORS:-0.220783517065;HSF1,2:-0.239923669553;PPARG:-0.252008863433;CDX1,2,4:-0.258621836122;PDX1:-0.26250475337;MTE{core}:-0.281531078078;POU5F1:-0.292134897475;TFCP2:-0.297637993838;ALX4:-0.312323729661;AHR_ARNT_ARNT2:-0.318821793273;PATZ1:-0.339318700086;ZEB1:-0.355102608419;XBP1:-0.37077592685;FOXM1:-0.386660761757;NANOG:-0.396463300576;MZF1:-0.398981751004;HES1:-0.416698536177;MYOD1:-0.425773964595;OCT4_SOX2{dimer}:-0.434311681523;NHLH1,2:-0.444389986374;RREB1:-0.44529927158;TFAP2B:-0.457283379197;MEF2{A,B,C,D}:-0.480854281077;TFDP1:-0.511957478123;MED-1{core}:-0.517865405336;TFAP2{A,C}:-0.528706617518;HNF4A_NR2F1,2:-0.536351502863;ZFP161:-0.547395851396;STAT5{A,B}:-0.563144041473;PAX5:-0.589212311307;NR1H4:-0.594540623394;MTF1:-0.596614783122;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.600510176565;FOXD3:-0.611546232966;SP1:-0.642238521498;HBP1_HMGB_SSRP1_UBTF:-0.650830997838;RXR{A,B,G}:-0.65623744016;HIC1:-0.694065856414;SRF:-0.699016366671;ZNF148:-0.701315399199;SNAI1..3:-0.708026832402;PAX4:-0.709600289554;HOXA9_MEIS1:-0.712718747311;AIRE:-0.713217769336;TAL1_TCF{3,4,12}:-0.713710184034;ZNF384:-0.716131620396;E2F1..5:-0.731296733495;NR5A1,2:-0.737698656501;EN1,2:-0.770507240786;FOXA2:-0.78769090005;FOXL1:-0.795977819437;REST:-0.805823338026;LEF1_TCF7_TCF7L1,2:-0.822069992141;NKX3-1:-0.836052628408;ZNF423:-0.879711998724;PRRX1,2:-0.893665167484;XCPE1{core}:-0.898820670776;CUX2:-0.903466747959;HNF1A:-0.908337611366;PRDM1:-0.913633902268;MAZ:-0.965886445104;CRX:-0.990533167169;NKX6-1,2:-0.998428608123;ESRRA:-1.0242659669;ZNF238:-1.04577366178;IKZF1:-1.05491576758;LMO2:-1.0690125674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.06950003624;HOX{A5,B5}:-1.08592553497;FOXQ1:-1.08877104747;NFY{A,B,C}:-1.09328133579;ELK1,4_GABP{A,B1}:-1.1057410402;VSX1,2:-1.12939938738;SOX5:-1.15960972069;EBF1:-1.19933099326;bHLH_family:-1.20411793646;TBP:-1.21587135418;DBP:-1.22444640524;SOX{8,9,10}:-1.2358527416;NR6A1:-1.26924042405;NRF1:-1.2719835334;RFX1:-1.27915441604;GZF1:-1.31503903606;ZBTB6:-1.3308857103;AR:-1.3706026287;EVI1:-1.40792724549;GTF2I:-1.42597326168;ZIC1..3:-1.48074616721;ADNP_IRX_SIX_ZHX:-1.54166049411;ALX1:-1.60639174452;TLX1..3_NFIC{dimer}:-1.61855078012;GTF2A1,2:-1.62267483073;FOX{I1,J2}:-1.63879074714;NFIX:-1.64298354138;PBX1:-1.66396114964;HOX{A6,A7,B6,B7}:-1.67571376752;ZNF143:-1.67915022011;CDC5L:-1.69304696795;TP53:-1.71995741556;POU6F1:-1.72926972283;NR3C1:-1.74246764834;TEAD1:-1.75541968115;YY1:-1.76834391871;POU3F1..4:-1.80801250495;NKX2-3_NKX2-5:-1.81680469376;UFEwm:-1.87863740851;MYBL2:-1.91757145394;GFI1B:-1.93238198469;NKX2-2,8:-1.96225449219;LHX3,4:-1.96861370164;TEF:-2.02646818626;HAND1,2:-2.0713221971;KLF4:-2.11035762823;SOX17:-2.11106245363;ARID5B:-2.16219560069;NKX3-2:-2.17083933528;GFI1:-2.1818639458;PAX1,9:-2.23088776998;POU1F1:-2.24406424223;ONECUT1,2:-2.3184344461;HOX{A4,D4}:-2.56906730897
|top_motifs=PAX3,7:3.00618570612;ETS1,2:2.83160872023;NFKB1_REL_RELA:2.80055860987;RUNX1..3:2.73121596299;SPI1:2.63976606098;SPIB:2.43342029018;PAX2:2.42596737591;ATF5_CREB3:2.34055939932;ATF4:2.23236494904;CREB1:2.15301038268;ELF1,2,4:1.96887715035;NFIL3:1.93893733008;FOS_FOS{B,L1}_JUN{B,D}:1.81147710931;BACH2:1.70619271693;RXRA_VDR{dimer}:1.70259733751;NANOG{mouse}:1.66221224243;NFATC1..3:1.6517417755;IRF1,2:1.64784583694;CEBPA,B_DDIT3:1.63692845273;MAFB:1.63458823966;HIF1A:1.62569468886;DMAP1_NCOR{1,2}_SMARC:1.59498747829;TGIF1:1.56754446028;FOSL2:1.53896413857;NFE2:1.52358226252;HLF:1.4798992947;JUN:1.41818156055;HMX1:1.40357229981;FOXN1:1.38313315983;FOX{D1,D2}:1.32416163891;T:1.28893187279;FOXO1,3,4:1.18085509366;TLX2:1.17055002923;FOXP3:1.06944152451;BREu{core}:0.97839517259;IRF7:0.953565958123;RORA:0.929059562358;EP300:0.92199758083;EGR1..3:0.80431888194;RFX2..5_RFXANK_RFXAP:0.729258518129;ATF6:0.698081389673;SREBF1,2:0.694272187959;PITX1..3:0.67613037312;BPTF:0.674626800115;NFE2L1:0.671286644759;ATF2:0.662315796579;STAT2,4,6:0.648873726716;IKZF2:0.641999374448;RBPJ:0.36947569922;PAX6:0.3323084541;SMAD1..7,9:0.318918413746;HMGA1,2:0.302278691486;FOX{F1,F2,J1}:0.283813096494;POU2F1..3:0.274685893838;NFE2L2:0.194955904162;NKX2-1,4:0.190067054353;MYFfamily:0.15294435014;SPZ1:0.122104218864;ESR1:0.0664846262652;ZBTB16:0.0112192750968;STAT1,3:0.0106563850168;FOXP1:0.00833502897151;GLI1..3:-0.0128632090486;TBX4,5:-0.0197794971486;MYB:-0.0556764119817;GATA4:-0.0965569434427;PAX8:-0.151425278354;GATA6:-0.180874237687;GCM1,2:-0.189946724384;TFAP4:-0.206372371004;SOX2:-0.215221628084;TOPORS:-0.220783517065;HSF1,2:-0.239923669553;PPARG:-0.252008863433;CDX1,2,4:-0.258621836122;PDX1:-0.26250475337;MTE{core}:-0.281531078078;POU5F1:-0.292134897475;TFCP2:-0.297637993838;ALX4:-0.312323729661;AHR_ARNT_ARNT2:-0.318821793273;PATZ1:-0.339318700086;ZEB1:-0.355102608419;XBP1:-0.37077592685;FOXM1:-0.386660761757;NANOG:-0.396463300576;MZF1:-0.398981751004;HES1:-0.416698536177;MYOD1:-0.425773964595;OCT4_SOX2{dimer}:-0.434311681523;NHLH1,2:-0.444389986374;RREB1:-0.44529927158;TFAP2B:-0.457283379197;MEF2{A,B,C,D}:-0.480854281077;TFDP1:-0.511957478123;MED-1{core}:-0.517865405336;TFAP2{A,C}:-0.528706617518;HNF4A_NR2F1,2:-0.536351502863;ZFP161:-0.547395851396;STAT5{A,B}:-0.563144041473;PAX5:-0.589212311307;NR1H4:-0.594540623394;MTF1:-0.596614783122;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.600510176565;FOXD3:-0.611546232966;SP1:-0.642238521498;HBP1_HMGB_SSRP1_UBTF:-0.650830997838;RXR{A,B,G}:-0.65623744016;HIC1:-0.694065856414;SRF:-0.699016366671;ZNF148:-0.701315399199;SNAI1..3:-0.708026832402;PAX4:-0.709600289554;HOXA9_MEIS1:-0.712718747311;AIRE:-0.713217769336;TAL1_TCF{3,4,12}:-0.713710184034;ZNF384:-0.716131620396;E2F1..5:-0.731296733495;NR5A1,2:-0.737698656501;EN1,2:-0.770507240786;FOXA2:-0.78769090005;FOXL1:-0.795977819437;REST:-0.805823338026;LEF1_TCF7_TCF7L1,2:-0.822069992141;NKX3-1:-0.836052628408;ZNF423:-0.879711998724;PRRX1,2:-0.893665167484;XCPE1{core}:-0.898820670776;CUX2:-0.903466747959;HNF1A:-0.908337611366;PRDM1:-0.913633902268;MAZ:-0.965886445104;CRX:-0.990533167169;NKX6-1,2:-0.998428608123;ESRRA:-1.0242659669;ZNF238:-1.04577366178;IKZF1:-1.05491576758;LMO2:-1.0690125674;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.06950003624;HOX{A5,B5}:-1.08592553497;FOXQ1:-1.08877104747;NFY{A,B,C}:-1.09328133579;ELK1,4_GABP{A,B1}:-1.1057410402;VSX1,2:-1.12939938738;SOX5:-1.15960972069;EBF1:-1.19933099326;bHLH_family:-1.20411793646;TBP:-1.21587135418;DBP:-1.22444640524;SOX{8,9,10}:-1.2358527416;NR6A1:-1.26924042405;NRF1:-1.2719835334;RFX1:-1.27915441604;GZF1:-1.31503903606;ZBTB6:-1.3308857103;AR:-1.3706026287;EVI1:-1.40792724549;GTF2I:-1.42597326168;ZIC1..3:-1.48074616721;ADNP_IRX_SIX_ZHX:-1.54166049411;ALX1:-1.60639174452;TLX1..3_NFIC{dimer}:-1.61855078012;GTF2A1,2:-1.62267483073;FOX{I1,J2}:-1.63879074714;NFIX:-1.64298354138;PBX1:-1.66396114964;HOX{A6,A7,B6,B7}:-1.67571376752;ZNF143:-1.67915022011;CDC5L:-1.69304696795;TP53:-1.71995741556;POU6F1:-1.72926972283;NR3C1:-1.74246764834;TEAD1:-1.75541968115;YY1:-1.76834391871;POU3F1..4:-1.80801250495;NKX2-3_NKX2-5:-1.81680469376;UFEwm:-1.87863740851;MYBL2:-1.91757145394;GFI1B:-1.93238198469;NKX2-2,8:-1.96225449219;LHX3,4:-1.96861370164;TEF:-2.02646818626;HAND1,2:-2.0713221971;KLF4:-2.11035762823;SOX17:-2.11106245363;ARID5B:-2.16219560069;NKX3-2:-2.17083933528;GFI1:-2.1818639458;PAX1,9:-2.23088776998;POU1F1:-2.24406424223;ONECUT1,2:-2.3184344461;HOX{A4,D4}:-2.56906730897
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11388-118C2;search_select_hide=table117:FF:11388-118C2
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Peripheral Blood Mononuclear Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12002
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage46 years old adult
sexmale
age46
cell typemononuclear cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberPBMC724
catalog number3H100-10-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004845
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12002 CAGE DRX008403 DRR009275
Accession ID Hg19

Library idBAMCTSS
CNhs12002 DRZ000700 DRZ002085
Accession ID Hg38

Library idBAMCTSS
CNhs12002 DRZ012050 DRZ013435
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004845
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.ACTTGA sRNA-Seq DRX037061 DRR041427
Accession ID Hg19

Library idBAMCTSS
SRhi10005.ACTTGA DRZ007069


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.154
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.154
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0482
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.154
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.299
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.292
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.358
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.186
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.044
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.215
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.329
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.397
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40.044
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.154
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.583
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.479
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.154
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.511
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.054
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.481
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.215
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.268
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.102
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.397
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.279
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.215
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.044
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.242
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.044
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.242
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.146
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.00559
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.645
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.641
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.466
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.418
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.268
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.511
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.186
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.396
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.524
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.482
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.292
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.538
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0569
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.371
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.432
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.154
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.215
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0.084
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.121
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.837
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.358
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.084
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.044
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.292
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.154
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.154
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.186
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.525
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12002

Jaspar motifP-value
MA0002.27.7141e-12
MA0003.10.508
MA0004.10.79
MA0006.10.594
MA0007.10.505
MA0009.10.0269
MA0014.10.616
MA0017.10.461
MA0018.21.39792e-4
MA0019.10.466
MA0024.10.0201
MA0025.16.51828e-5
MA0027.10.655
MA0028.10.351
MA0029.10.441
MA0030.10.165
MA0031.10.126
MA0035.20.736
MA0038.10.0946
MA0039.20.733
MA0040.10.565
MA0041.10.805
MA0042.10.859
MA0043.11.7298e-8
MA0046.10.0375
MA0047.20.794
MA0048.10.567
MA0050.14.14919e-9
MA0051.10.00114
MA0052.10.127
MA0055.10.283
MA0057.10.246
MA0058.10.708
MA0059.10.849
MA0060.13.74263e-7
MA0061.13.58033e-24
MA0062.25.95825e-5
MA0065.20.417
MA0066.10.0715
MA0067.15.16598e-5
MA0068.10.377
MA0069.10.741
MA0070.10.0407
MA0071.10.461
MA0072.10.506
MA0073.10.0872
MA0074.10.203
MA0076.10.681
MA0077.10.111
MA0078.10.66
MA0079.20.627
MA0080.21.84477e-15
MA0081.12.15211e-4
MA0083.10.131
MA0084.10.727
MA0087.10.797
MA0088.10.354
MA0090.10.00808
MA0091.10.504
MA0092.10.997
MA0093.10.939
MA0099.21.13561e-29
MA0100.10.473
MA0101.12.5533e-21
MA0102.26.20072e-11
MA0103.10.236
MA0104.20.539
MA0105.12.76981e-15
MA0106.10.0854
MA0107.11.79788e-25
MA0108.20.00531
MA0111.10.483
MA0112.20.112
MA0113.10.294
MA0114.10.861
MA0115.10.204
MA0116.10.00297
MA0117.10.00605
MA0119.10.698
MA0122.10.974
MA0124.10.79
MA0125.10.0854
MA0131.10.794
MA0135.10.419
MA0136.11.09924e-19
MA0137.20.557
MA0138.20.166
MA0139.10.897
MA0140.10.72
MA0141.10.62
MA0142.10.38
MA0143.10.149
MA0144.10.196
MA0145.10.575
MA0146.10.171
MA0147.10.689
MA0148.10.847
MA0149.10.748
MA0150.13.79299e-11
MA0152.10.0662
MA0153.10.00287
MA0154.19.45647e-4
MA0155.10.821
MA0156.14.3765e-18
MA0157.10.188
MA0159.10.191
MA0160.10.168
MA0162.10.332
MA0163.12.68095e-4
MA0164.10.615
MA0258.10.0741
MA0259.10.613



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12002

Novel motifP-value
10.471
100.0141
1000.545
1010.796
1020.784
1030.66
1040.503
1050.0937
1065.49434e-4
1070.959
1080.649
1090.26
110.324
1100.913
1110.12
1120.508
1130.0883
1140.208
1150.307
1160.659
1170.0171
1180.268
1190.624
120.242
1200.749
1210.374
1220.281
1230.00893
1240.548
1250.531
1260.206
1270.526
1280.0741
1290.886
130.492
1300.338
1310.679
1320.103
1330.599
1340.809
1350.548
1360.945
1370.00499
1380.211
1390.0359
140.326
1400.3
1410.615
1420.359
1430.00192
1440.596
1450.664
1460.72
1470.16
1480.066
1490.716
150.173
1500.686
1510.141
1520.255
1530.665
1540.352
1550.201
1560.77
1570.952
1580.0308
1590.164
160.982
1600.796
1610.499
1620.0537
1630.346
1640.0632
1650.372
1660.547
1670.319
1680.0126
1690.376
170.442
180.349
190.528
20.853
200.465
210.81
220.513
230.129
240.689
250.199
260.382
270.841
280.367
290.123
30.319
300.309
310.931
320.0195
330.511
340.697
350.0997
360.26
370.18
380.593
390.941
40.996
400.653
410.00988
420.372
430.0493
440.557
450.926
460.411
470.825
480.718
490.14
50.329
500.769
510.478
520.546
530.175
540.592
550.924
560.831
570.892
580.103
590.339
60.92
600.0903
610.183
620.0818
630.889
640.464
650.351
660.0404
670.454
680.208
690.428
70.343
700.13
710.0908
720.184
730.219
740.225
750.109
760.123
770.805
780.255
790.912
80.752
800.023
810.44
820.175
830.678
840.0435
850.0964
860.0158
870.398
880.712
890.597
90.318
900.203
910.484
920.338
930.753
940.138
950.14
960.712
970.966
980.168
999.43601e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12002


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000226 (single nucleate cell)
0000080 (circulating cell)
0000842 (mononuclear cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000178 (blood)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000135 (human peripheral blood mononuclear cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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