FFCP PHASE1:Hg19::chr20:7717290..7717300,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:7717290..7717300,+ | |||
|coexpression_cluster_id=C91 | |coexpression_cluster_id=C91 | ||
|description=CAGE_peak_at_chr20:7717290..7717300,+ | |description=CAGE_peak_at_chr20:7717290..7717300,+ | ||
|id=chr20:7717290..7717300,+ | |id=chr20:7717290..7717300,+ | ||
|ontology_enrichment_celltype=CL:0000359!4.20e-20!32;CL:0000192!3.09e-14!42;CL:0000514!3.09e-14!42;CL:0000680!2.22e-13!57;CL:0000056!2.22e-13!57;CL:0000355!2.22e-13!57;CL:0002539!1.41e-12!10;CL:0000569!1.04e-11!4;CL:0000011!1.04e-11!4;CL:0000187!2.19e-11!54;CL:0000183!2.71e-11!59;CL:0000220!6.97e-11!246;CL:0002321!1.05e-10!248;CL:0000393!8.46e-10!60;CL:0000211!8.46e-10!60;CL:0002166!7.54e-09!3;CL:0002582!1.10e-07!3;CL:0002494!1.73e-07!16;CL:0000144!2.78e-07!625;CL:0002202!4.13e-07!9;CL:0002632!4.13e-07!9;CL:0002368!7.61e-07!13;CL:0002371!8.28e-07!591 | |ontology_enrichment_celltype=CL:0000359!4.20e-20!32;CL:0000192!3.09e-14!42;CL:0000514!3.09e-14!42;CL:0000680!2.22e-13!57;CL:0000056!2.22e-13!57;CL:0000355!2.22e-13!57;CL:0002539!1.41e-12!10;CL:0000569!1.04e-11!4;CL:0000011!1.04e-11!4;CL:0000187!2.19e-11!54;CL:0000183!2.71e-11!59;CL:0000220!6.97e-11!246;CL:0002321!1.05e-10!248;CL:0000393!8.46e-10!60;CL:0000211!8.46e-10!60;CL:0002166!7.54e-09!3;CL:0002582!1.10e-07!3;CL:0002494!1.73e-07!16;CL:0000144!2.78e-07!625;CL:0002202!4.13e-07!9;CL:0002632!4.13e-07!9;CL:0002368!7.61e-07!13;CL:0002371!8.28e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000359;5.34e-17;32!CL:0000569;1.02e-13;4!CL:0002539;1.11e-13;10!CL:0000192;3.62e-11;43!CL:0002494;9.71e-09;16!CL:0002166;1.35e-08;3!CL:0002592;2.33e-08;3!CL:0000307;3.31e-08;3!CL:0000134;4.52e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.03e-18,32;CL:0000569,9.37e-14,4;CL:0000011,9.37e-14,4;CL:0002539,1.14e-13,10;CL:0000192,2.12e-13,43;CL:0000514,2.12e-13,43;CL:0000680,3.02e-11,58;CL:0000056,3.02e-11,58;CL:0000355,3.02e-11,58;CL:0000187,4.94e-10,55;CL:0000393,7.55e-09,61;CL:0000211,7.55e-09,61;CL:0002494,9.39e-09,16;CL:0002166,1.18e-08,3;CL:0002321,1.26e-08,250;CL:0002592,2.33e-08,3;CL:0000068,3.25e-08,3;CL:0000069,3.25e-08,3;CL:0000307,3.25e-08,3;CL:0000377,3.25e-08,3;CL:0000222,3.30e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000011;1.02e-13;4!CL:0000514;3.62e-11;43!CL:0000377;3.31e-08;3!CL:0000355;5.00e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!1.57e-14!14;DOID:120!3.27e-08!27;DOID:193!1.68e-07!29 | |ontology_enrichment_disease=DOID:2394!1.57e-14!14;DOID:120!3.27e-08!27;DOID:193!1.68e-07!29 | ||
|ontology_enrichment_disease_v019=DOID:2394;6.85e-19;14!DOID:120;2.28e-09;27!DOID:193;1.16e-08;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.24e-19,14;DOID:120,2.34e-09,27;DOID:193,1.19e-08,29 | |||
|ontology_enrichment_uberon=UBERON:0004573!2.13e-17!33;UBERON:0004571!2.13e-17!33;UBERON:0001637!2.59e-16!42;UBERON:0003509!2.59e-16!42;UBERON:0004572!2.59e-16!42;UBERON:0004872!3.42e-13!84;UBERON:0004237!1.41e-12!10;UBERON:0004695!1.41e-12!10;UBERON:0002111!1.41e-12!10;UBERON:0004178!1.41e-12!10;UBERON:0001134!3.65e-12!61;UBERON:0002036!3.65e-12!61;UBERON:0003082!3.65e-12!61;UBERON:0000914!6.27e-12!83;UBERON:0002329!6.27e-12!83;UBERON:0003077!6.27e-12!83;UBERON:0003059!6.27e-12!83;UBERON:0007282!6.27e-12!83;UBERON:0009618!6.27e-12!83;UBERON:0007285!6.27e-12!83;UBERON:0002385!1.29e-11!63;UBERON:0001015!1.29e-11!63;UBERON:0000383!1.29e-11!63;UBERON:0001981!2.80e-11!60;UBERON:0007500!2.80e-11!60;UBERON:0004537!2.80e-11!60;UBERON:0006965!2.80e-11!60;UBERON:0004290!5.95e-10!70;UBERON:0000486!6.95e-10!82;UBERON:0000055!3.45e-09!69;UBERON:0003914!1.80e-08!118;UBERON:0001135!5.35e-08!15;UBERON:0004535!8.59e-08!110;UBERON:0002049!1.88e-07!79;UBERON:0007798!1.88e-07!79;UBERON:0001009!1.95e-07!113;UBERON:0002090!3.59e-07!6;UBERON:0000947!3.97e-07!21;UBERON:0010191!3.97e-07!21;UBERON:0002119!5.88e-07!4;UBERON:0004531!5.88e-07!4;UBERON:0000992!5.97e-07!13;UBERON:0000490!8.86e-07!138 | |ontology_enrichment_uberon=UBERON:0004573!2.13e-17!33;UBERON:0004571!2.13e-17!33;UBERON:0001637!2.59e-16!42;UBERON:0003509!2.59e-16!42;UBERON:0004572!2.59e-16!42;UBERON:0004872!3.42e-13!84;UBERON:0004237!1.41e-12!10;UBERON:0004695!1.41e-12!10;UBERON:0002111!1.41e-12!10;UBERON:0004178!1.41e-12!10;UBERON:0001134!3.65e-12!61;UBERON:0002036!3.65e-12!61;UBERON:0003082!3.65e-12!61;UBERON:0000914!6.27e-12!83;UBERON:0002329!6.27e-12!83;UBERON:0003077!6.27e-12!83;UBERON:0003059!6.27e-12!83;UBERON:0007282!6.27e-12!83;UBERON:0009618!6.27e-12!83;UBERON:0007285!6.27e-12!83;UBERON:0002385!1.29e-11!63;UBERON:0001015!1.29e-11!63;UBERON:0000383!1.29e-11!63;UBERON:0001981!2.80e-11!60;UBERON:0007500!2.80e-11!60;UBERON:0004537!2.80e-11!60;UBERON:0006965!2.80e-11!60;UBERON:0004290!5.95e-10!70;UBERON:0000486!6.95e-10!82;UBERON:0000055!3.45e-09!69;UBERON:0003914!1.80e-08!118;UBERON:0001135!5.35e-08!15;UBERON:0004535!8.59e-08!110;UBERON:0002049!1.88e-07!79;UBERON:0007798!1.88e-07!79;UBERON:0001009!1.95e-07!113;UBERON:0002090!3.59e-07!6;UBERON:0000947!3.97e-07!21;UBERON:0010191!3.97e-07!21;UBERON:0002119!5.88e-07!4;UBERON:0004531!5.88e-07!4;UBERON:0000992!5.97e-07!13;UBERON:0000490!8.86e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.37e-18;33!UBERON:0004571;1.37e-18;33!UBERON:0004237;1.11e-13;10!UBERON:0004695;1.11e-13;10!UBERON:0002111;1.11e-13;10!UBERON:0004178;1.11e-13;10!UBERON:0002119;5.38e-13;4!UBERON:0001637;5.23e-12;42!UBERON:0003509;5.23e-12;42!UBERON:0004572;5.23e-12;42!UBERON:0000947;4.25e-09;21!UBERON:0010191;4.25e-09;21!UBERON:0001135;4.77e-09;15!UBERON:0003498;2.33e-08;3!UBERON:0005985;2.33e-08;3!UBERON:0001621;2.33e-08;3!UBERON:0007500;3.82e-07;56!UBERON:0001981;3.82e-07;56!UBERON:0004537;3.82e-07;56!UBERON:0000992;5.15e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,8.40e-22,33;UBERON:0004571,8.40e-22,33;UBERON:0001637,1.26e-16,42;UBERON:0003509,1.26e-16,42;UBERON:0004572,1.26e-16,42;UBERON:0004237,1.14e-13,10;UBERON:0004695,1.14e-13,10;UBERON:0002111,1.14e-13,10;UBERON:0004178,1.14e-13,10;UBERON:0002119,4.46e-13,4;UBERON:0004872,5.49e-12,83;UBERON:0007500,3.66e-11,59;UBERON:0001981,3.66e-11,59;UBERON:0004537,3.66e-11,59;UBERON:0006965,3.66e-11,59;UBERON:0001134,2.26e-10,62;UBERON:0002036,2.26e-10,62;UBERON:0003082,2.26e-10,62;UBERON:0002385,5.61e-10,64;UBERON:0001015,5.61e-10,64;UBERON:0000383,5.61e-10,64;UBERON:0000055,2.21e-09,68;UBERON:0000947,4.31e-09,21;UBERON:0010191,4.31e-09,21;UBERON:0001135,4.86e-09,15;UBERON:0003914,8.38e-09,117;UBERON:0002329,9.01e-09,71;UBERON:0003059,9.01e-09,71;UBERON:0007282,9.01e-09,71;UBERON:0004290,9.01e-09,71;UBERON:0009618,9.01e-09,71;UBERON:0003077,1.28e-08,72;UBERON:0007285,1.28e-08,72;UBERON:0000486,1.44e-08,83;UBERON:0007524,1.80e-08,73;UBERON:0004535,2.13e-08,109;UBERON:0001621,2.33e-08,3;UBERON:0001009,4.30e-08,112;UBERON:0002049,6.86e-08,78;UBERON:0007798,6.86e-08,78;UBERON:0007503,8.74e-08,78;UBERON:0000992,4.90e-07,13 | |||
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|short_description=p@chr20:7717290..7717300,+ | |short_description=p@chr20:7717290..7717300,+ | ||
}} | }} |
Latest revision as of 16:34, 28 July 2015
Short description: | p@chr20:7717290..7717300, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:7717290..7717300, + |
Coexpression cluster: | C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.03e-18 | 32 |
cardiac mesenchymal cell | 9.37e-14 | 4 |
migratory trunk neural crest cell | 9.37e-14 | 4 |
aortic smooth muscle cell | 1.14e-13 | 10 |
smooth muscle cell | 2.12e-13 | 43 |
smooth muscle myoblast | 2.12e-13 | 43 |
muscle precursor cell | 3.02e-11 | 58 |
myoblast | 3.02e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.02e-11 | 58 |
muscle cell | 4.94e-10 | 55 |
electrically responsive cell | 7.55e-09 | 61 |
electrically active cell | 7.55e-09 | 61 |
cardiocyte | 9.39e-09 | 16 |
epithelial cell of Malassez | 1.18e-08 | 3 |
embryonic cell | 1.26e-08 | 250 |
smooth muscle cell of the coronary artery | 2.33e-08 | 3 |
duct epithelial cell | 3.25e-08 | 3 |
branched duct epithelial cell | 3.25e-08 | 3 |
tracheal epithelial cell | 3.25e-08 | 3 |
tracheoblast | 3.25e-08 | 3 |
mesodermal cell | 3.30e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.24e-19 | 14 |
female reproductive organ cancer | 2.34e-09 | 27 |
reproductive organ cancer | 1.19e-08 | 29 |