FFCP PHASE1:Hg19::chr19:13213511..13213545,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4066 | |EntrezGene=4066 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6734 | |HGNC=6734 | ||
|TSSclassifier=strong | |||
|UniProt=P12980 | |UniProt=P12980 | ||
|association_with_transcript=135bp_to_ENST00000264824,uc002mwi.2_5end | |association_with_transcript=135bp_to_ENST00000264824,uc002mwi.2_5end | ||
|cluster_id=chr19:13213511..13213545,- | |||
|coexpression_cluster_id=C14 | |coexpression_cluster_id=C14 | ||
|description=CAGE_peak_2_at_LYL1_5end | |description=CAGE_peak_2_at_LYL1_5end | ||
|id=chr19:13213511..13213545,- | |id=chr19:13213511..13213545,- | ||
|ontology_enrichment_celltype=CL:0000763!6.29e-20!112;CL:0000049!6.29e-20!112;CL:0000115!7.61e-19!35;CL:0002139!1.38e-16!24;CL:0000071!3.38e-13!18;CL:0002546!3.38e-13!18;CL:0000988!1.52e-12!182;CL:0000037!2.85e-12!172;CL:0000566!2.85e-12!172;CL:0002078!4.29e-12!44;CL:0002032!4.84e-12!165;CL:0000837!4.84e-12!165;CL:0000213!4.23e-10!57;CL:0000215!4.23e-10!57;CL:0000766!2.63e-08!76;CL:1000413!1.18e-07!9;CL:0000839!7.57e-07!70 | |ontology_enrichment_celltype=CL:0000763!6.29e-20!112;CL:0000049!6.29e-20!112;CL:0000115!7.61e-19!35;CL:0002139!1.38e-16!24;CL:0000071!3.38e-13!18;CL:0002546!3.38e-13!18;CL:0000988!1.52e-12!182;CL:0000037!2.85e-12!172;CL:0000566!2.85e-12!172;CL:0002078!4.29e-12!44;CL:0002032!4.84e-12!165;CL:0000837!4.84e-12!165;CL:0000213!4.23e-10!57;CL:0000215!4.23e-10!57;CL:0000766!2.63e-08!76;CL:1000413!1.18e-07!9;CL:0000839!7.57e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.14e-26;24!CL:0000115;2.66e-23;36!CL:0000071;5.47e-21;18!CL:0002078;7.98e-13;45!CL:1000413;9.76e-12;9!CL:0000213;1.98e-09;58!CL:0000215;1.98e-09;58!CL:0000763;5.15e-09;100!CL:0002544;2.52e-08;6!CL:0002543;5.36e-08;6!CL:0000097;2.38e-07;5!CL:0002138;3.05e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,3.61e-27,36;CL:0002139,1.19e-26,24;CL:0000763,6.65e-23,108;CL:0000049,6.65e-23,108;CL:0000071,5.61e-21,18;CL:0002546,5.61e-21,18;CL:0002078,2.13e-19,45;CL:0000037,2.20e-14,168;CL:0000988,2.21e-14,177;CL:0002032,6.37e-14,161;CL:0000837,6.37e-14,161;CL:0000213,1.86e-13,58;CL:0000215,1.86e-13,58;CL:1000413,9.82e-12,9;CL:0002544,2.49e-08,6;CL:0002543,5.34e-08,6;CL:0000097,2.44e-07,5;CL:0002028,2.44e-07,5;CL:0005020,3.12e-07,6;CL:0002138,3.12e-07,6;CL:0005022,3.12e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;5.47e-21;18!CL:0000049;5.85e-08;108!CL:0005022;3.05e-07;6 | |||
|ontology_enrichment_disease=DOID:8692!6.11e-19!31;DOID:1240!5.21e-16!39;DOID:2531!1.56e-10!51;DOID:0060083!1.56e-10!51 | |ontology_enrichment_disease=DOID:8692!6.11e-19!31;DOID:1240!5.21e-16!39;DOID:2531!1.56e-10!51;DOID:0060083!1.56e-10!51 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.34e-28;31!DOID:1240;3.29e-19;39!DOID:2531;1.60e-11;51!DOID:0060083;1.60e-11;51!DOID:1036;4.27e-08;8 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,4.84e-29,31;DOID:1240,6.63e-24,39;DOID:2531,9.47e-17,51;DOID:0060083,9.47e-17,51;DOID:1036,4.34e-08,8 | |||
|ontology_enrichment_uberon=UBERON:0001009!4.13e-19!113;UBERON:0004535!1.40e-18!110;UBERON:0003081!5.62e-17!216;UBERON:0007023!5.46e-16!115;UBERON:0001986!3.38e-13!18;UBERON:0004638!3.38e-13!18;UBERON:0004852!3.38e-13!18;UBERON:0002193!4.79e-13!112;UBERON:0000055!1.47e-12!69;UBERON:0002049!8.99e-11!79;UBERON:0007798!8.99e-11!79;UBERON:0000487!4.40e-10!22;UBERON:0002390!9.64e-10!102;UBERON:0003061!9.64e-10!102;UBERON:0000178!1.11e-09!15;UBERON:0000179!1.11e-09!15;UBERON:0000463!1.11e-09!15;UBERON:0004872!1.35e-09!84;UBERON:0001981!2.88e-09!60;UBERON:0007500!2.88e-09!60;UBERON:0004537!2.88e-09!60;UBERON:0006965!2.88e-09!60;UBERON:0003914!8.64e-08!118;UBERON:0006914!1.04e-07!25;UBERON:0003915!1.18e-07!9;UBERON:0004700!1.18e-07!9;UBERON:0001917!1.18e-07!9;UBERON:0000025!2.01e-07!194;UBERON:0004111!2.35e-07!241;UBERON:0002405!3.81e-07!115 | |ontology_enrichment_uberon=UBERON:0001009!4.13e-19!113;UBERON:0004535!1.40e-18!110;UBERON:0003081!5.62e-17!216;UBERON:0007023!5.46e-16!115;UBERON:0001986!3.38e-13!18;UBERON:0004638!3.38e-13!18;UBERON:0004852!3.38e-13!18;UBERON:0002193!4.79e-13!112;UBERON:0000055!1.47e-12!69;UBERON:0002049!8.99e-11!79;UBERON:0007798!8.99e-11!79;UBERON:0000487!4.40e-10!22;UBERON:0002390!9.64e-10!102;UBERON:0003061!9.64e-10!102;UBERON:0000178!1.11e-09!15;UBERON:0000179!1.11e-09!15;UBERON:0000463!1.11e-09!15;UBERON:0004872!1.35e-09!84;UBERON:0001981!2.88e-09!60;UBERON:0007500!2.88e-09!60;UBERON:0004537!2.88e-09!60;UBERON:0006965!2.88e-09!60;UBERON:0003914!8.64e-08!118;UBERON:0006914!1.04e-07!25;UBERON:0003915!1.18e-07!9;UBERON:0004700!1.18e-07!9;UBERON:0001917!1.18e-07!9;UBERON:0000025!2.01e-07!194;UBERON:0004111!2.35e-07!241;UBERON:0002405!3.81e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.47e-21;18!UBERON:0001986;5.47e-21;18!UBERON:0004852;5.47e-21;18!UBERON:0000487;6.03e-16;22!UBERON:0006914;2.95e-13;25!UBERON:0000178;2.57e-12;15!UBERON:0000179;2.57e-12;15!UBERON:0000463;2.57e-12;15!UBERON:0003915;9.76e-12;9!UBERON:0004700;9.76e-12;9!UBERON:0001917;9.76e-12;9!UBERON:0002193;9.48e-09;42!UBERON:0000490;4.65e-08;33!UBERON:0000055;8.92e-08;65!UBERON:0002390;1.14e-07;32!UBERON:0004535;1.69e-07;109!UBERON:0001009;5.51e-07;112 | |||
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|phase1_expression=0.363356758541113,0.214100523890983,0,1.0007329835313,0.446961094427288,0,0,0,0.261185628199839,0.982935746006035,0.697801167972428,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0.123121058076788,0,0,0,0.273748850145768,0.251085279189606,0.0764134057479513,0,0,3.54027849164014,0.767658796194425,0.77408061658038,0.919421224478927,0.30120591877825,0.369754010166788,0.0774672005803016,0,22.6072338287832,1.10799081706375,0,0.434021741431704,0.447830948479849,0.971680998056939,1.28787783817093,2.76256653681173,1.88937971844405,2.66842467306598,0.464858073811369,0,0.929119112685311,0.575384784644301,0,0.47296445977717,0,1.29096936716765,0,0.941211697713023,0,0.449446968890169,0.918251677112708,0,0.639337125799041,1.31940520074686,0.199463657621632,0.426224750532694,0.580418477257168,0,0,0.251248665256743,0.521482918420201,0.434377689410233,0.605399502633369,0,0,2.11255286311942,1.91343869968539,1.88692780957538,0.786300418025466,1.35159203557356,0.803627933485401,3.42015292489498,2.98375015798635,0.730656615058536,1.75996244461323,1.09227722252426,0.889509253863555,1.28019066769952,0.400395987036012,0,1.32208974556972,2.86216126360609,0.569212969109448,0.587237189370939,0.382273228125229,35.686258716337,28.0254281490768,28.1820970709332,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0.270803863765016,0,0.130059347559878,0.164437904603676,0.552700035571697,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,2.43806866313962,2.68280343881454,0.895037932904712,0,0,0,0,0.486634870302636,0,0.221729397462564,0.87834785693126,1.30979075497713,0.364295288292542,0,0.97364218096405,1.21890816109487,1.19662164466979,0,0,0,28.2242618460721,34.409383804245,47.5582487202404,29.3960129800485,28.1064622260637,39.6169980393697,42.2169832404357,16.538672586837,12.4518191940349,8.36801531911676,9.26507429351038,12.1643536914962,10.7387305321195,15.8095124548724,47.7983749250238,10.8052671223737,12.7981742396917,10.3602562044656,45.994991239765,43.6662203401339,34.4419278589166,1.31780417436063,3.87780264148325,0,0,0.25326102332916,0,0,0,0,5.33744978648525,0.98667019366864,0,2.55950276932407,1.47115712802113,0.151357427644931,0,0.234321431833797,0,5.70471821544449,0,0,0,0,0.204154171254893,0.122834317311768,0.206651562351531,0,0,0.910161361938026,1.43723628363248,0,0.125118519871964,0,0,0,0,1.92834711372036,0.358779271377724,0,0,0.300091096084402,0,0,0.18611685633159,0.168776332241266,0,0,0,0,0.355009592516614,0.201504196455281,0.339121184620975,0,0,0,0,0,0.348581828608555,0,0.252320850875628,0,0,0,1.38134921352481,0,0,0,0.168584690078102,0,0,0,0,0,0,0,17.7157309109916,16.8290128564135,0.4115740113314,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0.325808305310325,0,0,0.231860809950154,0,4.61972632835436,7.40776820122577,3.42457474022277,0,0,1.47730203652438,0.234004265139238,1.93220510975347,0,0,0,0,0,0,16.7505500884621,56.7912399385308,37.5263889128797,36.6064681679082,52.3906098719477,0.063497894292169,0,1.17217447210047,0,0.205654985406647,1.50171528921959,0.857479297891735,0,0,0,0.904902010304444,3.57656445851882,0,0,0,0.771622122786426,0,0,0.142977993658148,1.08524321078289,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0,1.09970290300263,1.2162378064119,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,2.24702107184155,8.97484377612075,2.48649308061621,0.12269149171914,0.500170521059677,0.271265023699736,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,1.24060815673732,1.2942852049117,0.960548020230999,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0.105551628892876,25.0213444955973,25.1738683809243,6.26156156696204,53.9795384416013,0.270946437543853,1.00337954770971,0.509752546090077,0,0,68.1898216368857,87.0580051912919,0,0.984043937099117,0.976135183992909,1.64865618636356,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.751941714077915,0,0,0,0,0.384380134730212,0,0.10115778085555,0,0,1.3940745403212,0.308033580176089,0,0.869932992075073,0.55597265731176,0.429374660225974,0,0.316379424718726,0.190630193923825,0.255897791311334,0,0,0,0,0,0.117812402345686,0.606547444719948,0,0.842516912477962,0,0,0,0.136499911407986,0.141405431953713,1.13008116620243,0.551365343546124,1.99031692572366,0,0.578775534266688,0,1.42037263873893,1.239293992399,2.25356482025793,0.286822704408103,0.687743287091848,0.7133421029625,0,0,0,0,0.349934720244983,0,0,0,1.97701981631236,0,0,0.443430153536676,0.459446800413919,138.02574971115,159.809176292756,146.39932710376,26.9201906267302,32.9089818468955,125.155349060194,125.827324876481,148.314407967029,0,0,0,0.185803175125719,0.577076851905779,0.0711418433484141,2.23196781820351,33.1301756578476,23.3636551561487,37.889571307575,5.19395104439289,38.7500105796573,1.36940807419915,3.13359791546046,15.038068625404,43.6772786728136,1.1241165257259,1.41259795033733,0.851692475380653,15.8012458587652,1.84344458585075,2.46043718681657,2.66958626739054,1.563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| ||
|short_description=p2@LYL1 | |short_description=p2@LYL1 | ||
}} | }} |
Latest revision as of 00:05, 16 September 2015
Short description: | p2@LYL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LYL1_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 135bp_to_ENST00000264824, uc002mwi.2_5end |
EntrezGene: | LYL1 |
HGNC: | 6734 |
UniProt: | P12980 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 3.61e-27 | 36 |
endothelial cell of vascular tree | 1.19e-26 | 24 |
myeloid cell | 6.65e-23 | 108 |
common myeloid progenitor | 6.65e-23 | 108 |
blood vessel endothelial cell | 5.61e-21 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.61e-21 | 18 |
meso-epithelial cell | 2.13e-19 | 45 |
hematopoietic stem cell | 2.20e-14 | 168 |
hematopoietic cell | 2.21e-14 | 177 |
hematopoietic oligopotent progenitor cell | 6.37e-14 | 161 |
hematopoietic multipotent progenitor cell | 6.37e-14 | 161 |
lining cell | 1.86e-13 | 58 |
barrier cell | 1.86e-13 | 58 |
endothelial cell of artery | 9.82e-12 | 9 |
aortic endothelial cell | 2.49e-08 | 6 |
vein endothelial cell | 5.34e-08 | 6 |
mast cell | 2.44e-07 | 5 |
basophil mast progenitor cell | 2.44e-07 | 5 |
lymphangioblast | 3.12e-07 | 6 |
endothelial cell of lymphatic vessel | 3.12e-07 | 6 |
vascular lymphangioblast | 3.12e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.50e-21 | 203 |
blood vessel endothelium | 5.61e-21 | 18 |
endothelium | 5.61e-21 | 18 |
cardiovascular system endothelium | 5.61e-21 | 18 |
cardiovascular system | 2.91e-20 | 109 |
circulatory system | 4.84e-20 | 112 |
simple squamous epithelium | 6.13e-16 | 22 |
vessel | 1.40e-14 | 68 |
squamous epithelium | 2.98e-13 | 25 |
hemolymphoid system | 6.57e-13 | 108 |
blood | 2.76e-12 | 15 |
haemolymphatic fluid | 2.76e-12 | 15 |
organism substance | 2.76e-12 | 15 |
splanchnic layer of lateral plate mesoderm | 6.77e-12 | 83 |
endothelial tube | 9.82e-12 | 9 |
arterial system endothelium | 9.82e-12 | 9 |
endothelium of artery | 9.82e-12 | 9 |
vasculature | 3.35e-11 | 78 |
vascular system | 3.35e-11 | 78 |
epithelial tube open at both ends | 7.46e-11 | 59 |
blood vessel | 7.46e-11 | 59 |
blood vasculature | 7.46e-11 | 59 |
vascular cord | 7.46e-11 | 59 |
mesoderm | 3.42e-10 | 315 |
mesoderm-derived structure | 3.42e-10 | 315 |
presumptive mesoderm | 3.42e-10 | 315 |
hematopoietic system | 2.47e-09 | 98 |
blood island | 2.47e-09 | 98 |
epithelial tube | 6.13e-08 | 117 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 4.84e-29 | 31 |
leukemia | 6.63e-24 | 39 |
hematologic cancer | 9.47e-17 | 51 |
immune system cancer | 9.47e-17 | 51 |
chronic leukemia | 4.34e-08 | 8 |