FFCP PHASE1:Hg19::chr12:56323269..56323288,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:56323269..56323288,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_at_chr12:56323269..56323288,- | |description=CAGE_peak_at_chr12:56323269..56323288,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000838!1.43e-49!52;CL:0000542!1.82e-48!53;CL:0000051!1.82e-48!53;CL:0000084!5.43e-48!25;CL:0000827!5.43e-48!25;CL:0000791!6.22e-45!18;CL:0000789!6.22e-45!18;CL:0002420!6.22e-45!18;CL:0002419!6.22e-45!18;CL:0000790!6.22e-45!18;CL:0000625!6.94e-26!11;CL:0002087!2.99e-25!119;CL:0000738!1.72e-21!140;CL:0002031!8.72e-21!124;CL:0000624!1.63e-18!6;CL:0000037!7.27e-18!172;CL:0000566!7.27e-18!172;CL:0000988!2.08e-17!182;CL:0002032!1.95e-15!165;CL:0000837!1.95e-15!165;CL:0000898!8.41e-10!3;CL:0000623!2.57e-09!3;CL:0000825!2.57e-09!3;CL:0000815!6.77e-07!2;CL:0000792!6.77e-07!2;CL:0002677!6.77e-07!2;CL:0000893!9.09e-07!2;CL:0002489!9.09e-07!2;CL:0000809!9.09e-07!2;CL:0000808!9.09e-07!2;CL:0000894!9.09e-07!2;CL:0000806!9.09e-07!2;CL:0000807!9.09e-07!2;CL:0000805!9.09e-07!2;CL:0002425!9.09e-07!2 | |ontology_enrichment_celltype=CL:0000838!1.43e-49!52;CL:0000542!1.82e-48!53;CL:0000051!1.82e-48!53;CL:0000084!5.43e-48!25;CL:0000827!5.43e-48!25;CL:0000791!6.22e-45!18;CL:0000789!6.22e-45!18;CL:0002420!6.22e-45!18;CL:0002419!6.22e-45!18;CL:0000790!6.22e-45!18;CL:0000625!6.94e-26!11;CL:0002087!2.99e-25!119;CL:0000738!1.72e-21!140;CL:0002031!8.72e-21!124;CL:0000624!1.63e-18!6;CL:0000037!7.27e-18!172;CL:0000566!7.27e-18!172;CL:0000988!2.08e-17!182;CL:0002032!1.95e-15!165;CL:0000837!1.95e-15!165;CL:0000898!8.41e-10!3;CL:0000623!2.57e-09!3;CL:0000825!2.57e-09!3;CL:0000815!6.77e-07!2;CL:0000792!6.77e-07!2;CL:0002677!6.77e-07!2;CL:0000893!9.09e-07!2;CL:0002489!9.09e-07!2;CL:0000809!9.09e-07!2;CL:0000808!9.09e-07!2;CL:0000894!9.09e-07!2;CL:0000806!9.09e-07!2;CL:0000807!9.09e-07!2;CL:0000805!9.09e-07!2;CL:0002425!9.09e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.90e-44;18!CL:0000789;3.90e-44;18!CL:0002419;3.90e-44;18!CL:0000084;5.37e-38;25!CL:0000625;1.09e-26;11!CL:0000624;3.98e-22;6!CL:0000542;1.93e-11;53!CL:0000895;1.42e-09;1 | |ontology_enrichment_celltype_v019=CL:0000791;3.90e-44;18!CL:0000789;3.90e-44;18!CL:0002419;3.90e-44;18!CL:0000084;5.37e-38;25!CL:0000625;1.09e-26;11!CL:0000624;3.98e-22;6!CL:0000542;1.93e-11;53!CL:0000895;1.42e-09;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.71e-44,18;CL:0000789,1.71e-44,18;CL:0002420,1.71e-44,18;CL:0002419,1.71e-44,18;CL:0000790,1.71e-44,18;CL:0000084,3.69e-38,25;CL:0000827,3.69e-38,25;CL:0000625,9.59e-27,11;CL:0000624,1.74e-22,6;CL:0000838,7.80e-21,52;CL:0000542,2.10e-20,53;CL:0000051,2.10e-20,53;CL:0000810,1.15e-09,1;CL:0000895,1.15e-09,1;CL:0002436,1.15e-09,1;CL:0002427,1.15e-09,1;CL:0002428,1.15e-09,1;CL:0002429,1.15e-09,1;CL:0002433,1.15e-09,1;CL:0002431,1.15e-09,1;CL:0002432,1.15e-09,1;CL:0002087,3.14e-08,115;CL:0000738,5.70e-08,136;CL:0002031,8.31e-08,120 | |||
|ontology_enrichment_development_v019=CL:0000790;3.90e-44;18!CL:0000051;1.93e-11;53!CL:0002427;1.42e-09;1 | |ontology_enrichment_development_v019=CL:0000790;3.90e-44;18!CL:0000051;1.93e-11;53!CL:0002427;1.42e-09;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.59e-15!15;UBERON:0000179!5.59e-15!15;UBERON:0000463!5.59e-15!15;UBERON:0002370!7.15e-13!4;UBERON:0005058!7.15e-13!4;UBERON:0009113!7.15e-13!4;UBERON:0003295!7.15e-13!4;UBERON:0005562!7.15e-13!4;UBERON:0003351!1.44e-08!6;UBERON:0004177!2.46e-07!7 | |ontology_enrichment_uberon=UBERON:0000178!5.59e-15!15;UBERON:0000179!5.59e-15!15;UBERON:0000463!5.59e-15!15;UBERON:0002370!7.15e-13!4;UBERON:0005058!7.15e-13!4;UBERON:0009113!7.15e-13!4;UBERON:0003295!7.15e-13!4;UBERON:0005562!7.15e-13!4;UBERON:0003351!1.44e-08!6;UBERON:0004177!2.46e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.24e-18;2!UBERON:0005058;2.24e-18;2!UBERON:0009113;2.24e-18;2!UBERON:0000178;4.39e-09;15!UBERON:0000179;4.39e-09;15!UBERON:0000463;4.39e-09;15!UBERON:0004177;6.96e-08;5!UBERON:0005057;6.96e-08;5!UBERON:0002390;9.36e-08;32 | |ontology_enrichment_uberon_v019=UBERON:0002370;2.24e-18;2!UBERON:0005058;2.24e-18;2!UBERON:0009113;2.24e-18;2!UBERON:0000178;4.39e-09;15!UBERON:0000179;4.39e-09;15!UBERON:0000463;4.39e-09;15!UBERON:0004177;6.96e-08;5!UBERON:0005057;6.96e-08;5!UBERON:0002390;9.36e-08;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.06e-20,4;UBERON:0005058,6.06e-20,4;UBERON:0009113,6.06e-20,4;UBERON:0003295,6.06e-20,4;UBERON:0005562,6.06e-20,4;UBERON:0003351,1.72e-13,6;UBERON:0004177,1.22e-11,7;UBERON:0005057,1.22e-11,7;UBERON:0000178,4.50e-09,15;UBERON:0000179,4.50e-09,15;UBERON:0000463,4.50e-09,15;UBERON:0000974,2.71e-08,10;UBERON:0003408,2.71e-08,10;UBERON:0001042,2.71e-08,10;UBERON:0009145,2.71e-08,10;UBERON:0006562,1.40e-07,11;UBERON:0009722,1.40e-07,11;UBERON:0007690,1.40e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.656804715599566,0.393553906568396,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0.434021741431704,0.223915474239924,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,1.20118796110804,0,0,0,0,0,0,0,0,0.263384084775077,1.37696839079683,1.57204305099666,1.85041349099558,0.501559486172034,0.651844533267181,2.36723902867367,0,0.445641827540694,0.589211814949674,0.443067789167242,0.270803863765016,0.128091319725675,0.260118695119756,1.15106533222573,2.76350017785848,2.31842468588042,0.741432815810302,0.802622484269139,1.04535523804977,0.679856056185397,1.53288197440768,0.34362744548263,0.253019692019503,1.59282707162048,3.25541726928209,0.950452044448374,0.150575119077773,1.27986611154418,0,1.18388626022008,1.64225599384209,0.201606743224732,0.267440195783507,1.15859523106239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,0.862510299438069,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.647142602455851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,1.70894156152249,0.476463550915578,2.05681136543097,1.29694662238543,1.08006287447623,0.79312517629427,0,0,0,0,0,0.497992903438899,0.318852545457645,0,0,0,0,0,0.228234679033192,0.313359791546046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67767649223376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68156786065235,2.85543685760946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.656804715599566,0.393553906568396,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0.434021741431704,0.223915474239924,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,1.20118796110804,0,0,0,0,0,0,0,0,0.263384084775077,1.37696839079683,1.57204305099666,1.85041349099558,0.501559486172034,0.651844533267181,2.36723902867367,0,0.445641827540694,0.589211814949674,0.443067789167242,0.270803863765016,0.128091319725675,0.260118695119756,1.15106533222573,2.76350017785848,2.31842468588042,0.741432815810302,0.802622484269139,1.04535523804977,0.679856056185397,1.53288197440768,0.34362744548263,0.253019692019503,1.59282707162048,3.25541726928209,0.950452044448374,0.150575119077773,1.27986611154418,0,1.18388626022008,1.64225599384209,0.201606743224732,0.267440195783507,1.15859523106239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,0.862510299438069,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.647142602455851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,1.70894156152249,0.476463550915578,2.05681136543097,1.29694662238543,1.08006287447623,0.79312517629427,0,0,0,0,0,0.497992903438899,0.318852545457645,0,0,0,0,0,0.228234679033192,0.313359791546046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67767649223376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68156786065235,2.85543685760946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:56323269..56323288,- | |short_description=p@chr12:56323269..56323288,- | ||
}} | }} |
Latest revision as of 10:14, 24 July 2015
Short description: | p@chr12:56323269..56323288, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:56323269..56323288, - |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.71e-44 | 18 |
alpha-beta T cell | 1.71e-44 | 18 |
immature T cell | 1.71e-44 | 18 |
mature T cell | 1.71e-44 | 18 |
immature alpha-beta T cell | 1.71e-44 | 18 |
T cell | 3.69e-38 | 25 |
pro-T cell | 3.69e-38 | 25 |
CD8-positive, alpha-beta T cell | 9.59e-27 | 11 |
CD4-positive, alpha-beta T cell | 1.74e-22 | 6 |
lymphoid lineage restricted progenitor cell | 7.80e-21 | 52 |
lymphocyte | 2.10e-20 | 53 |
common lymphoid progenitor | 2.10e-20 | 53 |
CD4-positive, alpha-beta thymocyte | 1.15e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.15e-09 | 1 |
mature CD4 single-positive thymocyte | 1.15e-09 | 1 |
resting double-positive thymocyte | 1.15e-09 | 1 |
double-positive blast | 1.15e-09 | 1 |
CD69-positive double-positive thymocyte | 1.15e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.15e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.15e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.15e-09 | 1 |
nongranular leukocyte | 3.14e-08 | 115 |
leukocyte | 5.70e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 8.31e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.06e-20 | 4 |
hemolymphoid system gland | 6.06e-20 | 4 |
thymic region | 6.06e-20 | 4 |
pharyngeal gland | 6.06e-20 | 4 |
thymus primordium | 6.06e-20 | 4 |
pharyngeal epithelium | 1.72e-13 | 6 |
hemopoietic organ | 1.22e-11 | 7 |
immune organ | 1.22e-11 | 7 |
blood | 4.50e-09 | 15 |
haemolymphatic fluid | 4.50e-09 | 15 |
organism substance | 4.50e-09 | 15 |
neck | 2.71e-08 | 10 |
gland of gut | 2.71e-08 | 10 |
chordate pharynx | 2.71e-08 | 10 |
pharyngeal region of foregut | 2.71e-08 | 10 |
pharynx | 1.40e-07 | 11 |
entire pharyngeal arch endoderm | 1.40e-07 | 11 |
early pharyngeal endoderm | 1.40e-07 | 11 |