FFCP PHASE1:Hg19::chr2:109204743..109204855,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt=P48059 | |UniProt=P48059 | ||
|association_with_transcript=0bp_to_ENST00000332345,NM_004987,uc002teg.2_5end | |association_with_transcript=0bp_to_ENST00000332345,NM_004987,uc002teg.2_5end | ||
|cluster_id=chr2:109204743..109204855,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_2_at_LIMS1_5end | |description=CAGE_peak_2_at_LIMS1_5end | ||
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|ontology_enrichment_celltype=CL:0000763!7.39e-50!112;CL:0000049!7.39e-50!112;CL:0000037!1.93e-38!172;CL:0000566!1.93e-38!172;CL:0000766!2.12e-38!76;CL:0002032!2.09e-36!165;CL:0000837!2.09e-36!165;CL:0000839!8.65e-35!70;CL:0000988!9.57e-35!182;CL:0000557!1.05e-34!71;CL:0002009!4.47e-32!65;CL:0002194!3.02e-31!63;CL:0000576!3.02e-31!63;CL:0000040!3.02e-31!63;CL:0000559!3.02e-31!63;CL:0002057!1.77e-28!42;CL:0000738!4.76e-27!140;CL:0000860!2.86e-24!45;CL:0002031!1.48e-22!124;CL:0002087!5.95e-20!119;CL:0000134!3.97e-12!358;CL:0002320!6.56e-12!365;CL:0000048!1.30e-10!430;CL:0000723!5.95e-10!436;CL:0000034!1.38e-09!444;CL:0000219!8.37e-08!390;CL:0002393!9.22e-07!9;CL:0002397!9.22e-07!9 | |ontology_enrichment_celltype=CL:0000763!7.39e-50!112;CL:0000049!7.39e-50!112;CL:0000037!1.93e-38!172;CL:0000566!1.93e-38!172;CL:0000766!2.12e-38!76;CL:0002032!2.09e-36!165;CL:0000837!2.09e-36!165;CL:0000839!8.65e-35!70;CL:0000988!9.57e-35!182;CL:0000557!1.05e-34!71;CL:0002009!4.47e-32!65;CL:0002194!3.02e-31!63;CL:0000576!3.02e-31!63;CL:0000040!3.02e-31!63;CL:0000559!3.02e-31!63;CL:0002057!1.77e-28!42;CL:0000738!4.76e-27!140;CL:0000860!2.86e-24!45;CL:0002031!1.48e-22!124;CL:0002087!5.95e-20!119;CL:0000134!3.97e-12!358;CL:0002320!6.56e-12!365;CL:0000048!1.30e-10!430;CL:0000723!5.95e-10!436;CL:0000034!1.38e-09!444;CL:0000219!8.37e-08!390;CL:0002393!9.22e-07!9;CL:0002397!9.22e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.90e-24;33!CL:0002057;5.90e-24;33!CL:0000473;1.33e-23;39!CL:0000234;1.33e-23;39!CL:0000576;1.60e-22;48!CL:0000766;3.71e-20;69!CL:0000763;1.36e-17;100!CL:0000738;1.60e-08;136!CL:0000988;2.74e-07;177!CL:0002087;7.11e-07;104 | |ontology_enrichment_celltype_v019=CL:0000860;5.90e-24;33!CL:0002057;5.90e-24;33!CL:0000473;1.33e-23;39!CL:0000234;1.33e-23;39!CL:0000576;1.60e-22;48!CL:0000766;3.71e-20;69!CL:0000763;1.36e-17;100!CL:0000738;1.60e-08;136!CL:0000988;2.74e-07;177!CL:0002087;7.11e-07;104 | ||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.45e-60,108;CL:0000049,1.45e-60,108;CL:0000766,3.67e-48,72;CL:0000037,4.31e-44,168;CL:0000839,5.43e-44,66;CL:0000557,7.76e-44,67;CL:0002032,1.48e-41,161;CL:0000837,1.48e-41,161;CL:0002009,7.06e-41,61;CL:0002194,5.97e-40,59;CL:0000576,5.97e-40,59;CL:0000040,5.97e-40,59;CL:0000559,5.97e-40,59;CL:0000988,3.66e-39,177;CL:0000473,1.34e-36,48;CL:0000234,1.34e-36,48;CL:0000860,2.58e-32,42;CL:0002057,2.58e-32,42;CL:0000738,7.82e-31,136;CL:0002031,4.08e-26,120;CL:0002087,8.08e-23,115;CL:0000134,6.50e-14,354;CL:0002320,4.46e-13,361;CL:0000048,6.97e-12,427;CL:0000723,3.18e-11,433;CL:0000034,3.30e-11,441;CL:0000219,8.95e-10,386;CL:0002393,1.67e-07,9;CL:0002397,1.67e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.98e-23;42!CL:0000049;5.19e-17;108 | |ontology_enrichment_development_v019=CL:0002057;1.98e-23;42!CL:0000049;5.19e-17;108 | ||
|ontology_enrichment_disease=DOID:8692!9.72e-11!31 | |ontology_enrichment_disease=DOID:8692!9.72e-11!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;6.70e-12;31 | |ontology_enrichment_disease_v019=DOID:8692;6.70e-12;31 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,2.84e-12,31;DOID:1240,1.06e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.40e-36!102;UBERON:0003061!1.40e-36!102;UBERON:0002193!1.07e-34!112;UBERON:0002371!1.78e-32!80;UBERON:0001474!8.19e-29!86;UBERON:0002405!1.40e-24!115;UBERON:0004765!5.69e-24!101;UBERON:0001434!5.69e-24!101;UBERON:0003081!2.98e-19!216;UBERON:0002204!1.47e-15!167;UBERON:0002384!8.88e-11!375;UBERON:0007023!1.96e-09!115 | |ontology_enrichment_uberon=UBERON:0002390!1.40e-36!102;UBERON:0003061!1.40e-36!102;UBERON:0002193!1.07e-34!112;UBERON:0002371!1.78e-32!80;UBERON:0001474!8.19e-29!86;UBERON:0002405!1.40e-24!115;UBERON:0004765!5.69e-24!101;UBERON:0001434!5.69e-24!101;UBERON:0003081!2.98e-19!216;UBERON:0002204!1.47e-15!167;UBERON:0002384!8.88e-11!375;UBERON:0007023!1.96e-09!115 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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|phase1_expression=1.2717486548939,14.5588356245869,0.986680828671798,0,0.893922188854576,0,2.53299878168311,1.89515962028049,1.30592814099919,0.982935746006035,1.39560233594486,0,0,2.22779435328084,0.994192127183747,8.0679017574213,3.01347264011988,4.38186054232424,4.87932798790507,0,0,0,0,0.547497700291537,0.125542639594803,0.458480434487708,0.492603536699674,0.472264687882075,72.3790269401983,79.452685406123,90.2577998932723,0,0,0.369754010166788,0.619737604642413,0.995184627411951,8.22081230137572,293.617566521895,250.881103785147,157.332881268993,44.1113484252651,79.35394817465,55.3787470413501,224.785677153207,344.622860644194,259.564945470963,379.789046303889,520.949714123653,528.359068747047,303.227781507547,357.088024901566,439.856947592769,615.371040114864,589.327516112033,583.688157221613,357.660445130949,536.260584863667,703.15978282867,747.762949062115,1121.96787865802,888.678604860667,138.207694778234,259.701682223365,181.571743726928,493.645914907221,615.612968789887,596.663714537761,287.930970384228,328.012755686307,442.848054353733,309.964545348285,741.711158878955,699.065413856914,114.500365181072,135.641543377698,88.2662897590263,93.008106589298,46.4046598880254,81.0056956953284,76.9534408101371,67.4327535704915,63.7497896638572,3.51992488922645,4.36910889009705,1.77901850772711,5.54749289336459,3.2031678962881,4.59801951963587,1.98313461835459,2.86216126360609,3.98449078376614,2.93618594685469,3.82273228125229,13.2171328579026,34.1910223418737,7.90152254325231,0,1.96505381374582,1.23360899399706,0.501559486172034,0.32592226663359,0.946895611469467,1.94826728407911,5.68193330114385,1.47302953737419,1.77227115666897,1.08321545506006,3.20228299314188,1.8208308658383,0.657751618414705,0.276350017785848,2.31842468588042,0.444859689486181,0.267540828089713,0,1.0197840842781,0.766440987203842,0,0.253019692019503,1.59282707162048,0,0.950452044448374,2.10805166708882,2.17577238962511,0,2.13099526839615,1.64225599384209,0.403213486449465,0,0.289648807765598,0,0,0.12786256184353,0,0,0.579386075843295,2.3858578411533,0.486634870302636,0.850813354476611,1.55210578223795,1.66886092816939,2.03017567021455,0,0,229.455007313861,247.264226964959,246.769974723014,12.4015124638778,12.0118931263827,2.97166001063652,1.19257444420023,1.72046919021225,0.694281003215189,5.6530794192401,5.03399323451887,0.825354125820202,1.46296476575767,2.32575083252396,7.1153252537342,1.67360306382335,0.402829317109147,0,0.24406205754817,1.47065232138347,0.81014194788176,2.76829157680647,1.79623498100936,0.675668882899933,1.53316637465883,0.949265659568129,0.916008719652036,83.0216629847199,151.234303017847,0,0.496971951695318,1.13967460498122,0.794455084879313,0,2.4826786753885,0.560677600142307,4.2699598291882,1.2333377420858,0.622422070799533,0.808264032418128,0,1.21085942115945,0.576175924479999,0,3.74592092196385,1.1409436430889,0.896692083310806,0,0,0,0.204154171254893,0.122834317311768,0.206651562351531,0,2.22540236350701,0,0,0,0,0.277064115484183,0,0,7.21142682751665,1.81491493056034,0,0.85422955527427,0.211931901159562,0,0,0,0,0,0.292311015483596,0,0,0,0.355009592516614,0,0,4.83152132908242,2.45471508531751,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.110293972732394,0,0,0.404493924480493,0,0,1.4763109092493,2.80483547606892,0,0,0,0,2.36315962672562,0,0.860919069801795,4.11762744716461,4.39001141634502,0,0.402115889646523,0.185176890317059,0,0,0,0.463721619900307,1.99594780200897,1.58803092537181,0,0.761016608938393,0,0,185.155188577723,356.622500072198,170.777205469749,0,2.18376766658517,2.26840155587818,0.358234090811393,0.290633938513962,0,385.262652034628,87.5201434091467,8.08579650609011,11.241356366523,11.1093341415214,0.190493682876507,0.763976851116555,0,0,0.102827492703324,1.20137223137567,0.285826432630578,0.112131084345361,0.43596006883328,0.8800594298514,8.53193324001333,0,0,8.24408161413099,1.04007436911366,0,0,0,0.57191197463259,0.542621605391443,0,0.65147236858747,2.84313558994037,0,24.4165895418265,18.3022026306062,15.795732606765,69.3255549654786,94.9265902806719,147.583757638122,0.958499421966331,1.14861935834114,0,5.35690834670043,3.49309748335652,4.1184021545176,0,7.88123040807709,0.862510299438069,3.85029108839245,0.76228387266739,1.30139853857622,0,2.51274398001523,0,14.9801404789436,8.97484377612075,56.3605098273008,1.2269149171914,0.500170521059677,0.542530047399471,0.415941723061614,0,0,0.234282829985426,1.50473049863859,4.5481500811197,0,0.664225598535437,0,0.0868836144680828,0.783204629850962,0,38.6656208849799,58.0271200202079,41.4102924277364,0,0,0,1.24053903909388,0.153461973288062,0.280660094433074,0.896974044789907,0,1.12597744800525,0,0,0.177561725313127,0.164254312027618,2.07701771673448,0,0,1.40354529212299,0.368323955743585,0.114814448164607,0.364182336013434,1.04899531967539,0,0.770153371044148,0,0,2.11103257785751,0,0.680374821106063,0.431831832204279,0,0.270946437543853,0.501689773854853,0,0,0,17.3215302550288,14.3789498063695,0.256450125116389,0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| ||
|short_description=p2@LIMS1 | |short_description=p2@LIMS1 | ||
}} | }} |
Latest revision as of 06:19, 16 September 2015
Short description: | p2@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIMS1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000332345, NM_004987, uc002teg.2_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | P48059 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.45e-60 | 108 |
common myeloid progenitor | 1.45e-60 | 108 |
myeloid leukocyte | 3.67e-48 | 72 |
hematopoietic stem cell | 4.31e-44 | 168 |
myeloid lineage restricted progenitor cell | 5.43e-44 | 66 |
granulocyte monocyte progenitor cell | 7.76e-44 | 67 |
hematopoietic oligopotent progenitor cell | 1.48e-41 | 161 |
hematopoietic multipotent progenitor cell | 1.48e-41 | 161 |
macrophage dendritic cell progenitor | 7.06e-41 | 61 |
monopoietic cell | 5.97e-40 | 59 |
monocyte | 5.97e-40 | 59 |
monoblast | 5.97e-40 | 59 |
promonocyte | 5.97e-40 | 59 |
hematopoietic cell | 3.66e-39 | 177 |
defensive cell | 1.34e-36 | 48 |
phagocyte | 1.34e-36 | 48 |
classical monocyte | 2.58e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.58e-32 | 42 |
leukocyte | 7.82e-31 | 136 |
hematopoietic lineage restricted progenitor cell | 4.08e-26 | 120 |
nongranular leukocyte | 8.08e-23 | 115 |
mesenchymal cell | 6.50e-14 | 354 |
connective tissue cell | 4.46e-13 | 361 |
multi fate stem cell | 6.97e-12 | 427 |
somatic stem cell | 3.18e-11 | 433 |
stem cell | 3.30e-11 | 441 |
motile cell | 8.95e-10 | 386 |
intermediate monocyte | 1.67e-07 | 9 |
CD14-positive, CD16-positive monocyte | 1.67e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.18e-46 | 98 |
blood island | 5.18e-46 | 98 |
hemolymphoid system | 1.05e-43 | 108 |
bone marrow | 1.42e-41 | 76 |
immune system | 1.14e-38 | 93 |
bone element | 7.26e-38 | 82 |
skeletal element | 2.69e-34 | 90 |
skeletal system | 2.37e-30 | 100 |
lateral plate mesoderm | 1.51e-23 | 203 |
musculoskeletal system | 9.87e-18 | 167 |
connective tissue | 4.92e-12 | 371 |
mesoderm | 5.64e-12 | 315 |
mesoderm-derived structure | 5.64e-12 | 315 |
presumptive mesoderm | 5.64e-12 | 315 |
adult organism | 2.67e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.84e-12 | 31 |
leukemia | 1.06e-07 | 39 |