FFCP PHASE1:Hg19::chr15:77907614..77907624,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84894 | |EntrezGene=84894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=21205 | |HGNC=21205 | ||
|TSSclassifier=strong | |||
|UniProt=Q96FE5 | |UniProt=Q96FE5 | ||
|association_with_transcript=170bp_to_AY324322_5end | |association_with_transcript=170bp_to_AY324322_5end | ||
|cluster_id=chr15:77907614..77907624,- | |||
|coexpression_cluster_id=C2350 | |coexpression_cluster_id=C2350 | ||
|description=CAGE_peak_17_at_LINGO1_5end | |description=CAGE_peak_17_at_LINGO1_5end | ||
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|ontology_enrichment_celltype=CL:0000148!1.94e-13!10;CL:0000541!1.94e-13!10;CL:0002322!4.31e-11!5;CL:0000147!3.59e-09!14;CL:0000710!1.55e-07!20 | |ontology_enrichment_celltype=CL:0000148!1.94e-13!10;CL:0000541!1.94e-13!10;CL:0002322!4.31e-11!5;CL:0000147!3.59e-09!14;CL:0000710!1.55e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000123;2.85e-10;2!CL:0000242;2.85e-10;2!CL:0002567;2.88e-07;3 | |ontology_enrichment_celltype_v019=CL:0000123;2.85e-10;2!CL:0000242;2.85e-10;2!CL:0002567;2.88e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.99e-10,2;CL:0002567,2.47e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.88e-07;3 | |ontology_enrichment_development_v019=UBERON:0006215;2.88e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002619;6.21e-13;22!UBERON:0000956;1.76e-11;25!UBERON:0000203;1.76e-11;25!UBERON:0001871;2.36e-11;6!UBERON:0002771;1.43e-10;2!UBERON:0001954;1.97e-10;2!UBERON:0003022;1.97e-10;2!UBERON:0002421;1.97e-10;2!UBERON:0002600;1.97e-10;2!UBERON:0001893;8.36e-09;34!UBERON:0002791;2.09e-08;32!UBERON:0001869;2.09e-08;32!UBERON:0001950;2.27e-08;20!UBERON:0003528;3.96e-08;34!UBERON:0002020;3.96e-08;34!UBERON:0000955;1.57e-07;68 | |ontology_enrichment_uberon_v019=UBERON:0002619;6.21e-13;22!UBERON:0000956;1.76e-11;25!UBERON:0000203;1.76e-11;25!UBERON:0001871;2.36e-11;6!UBERON:0002771;1.43e-10;2!UBERON:0001954;1.97e-10;2!UBERON:0003022;1.97e-10;2!UBERON:0002421;1.97e-10;2!UBERON:0002600;1.97e-10;2!UBERON:0001893;8.36e-09;34!UBERON:0002791;2.09e-08;32!UBERON:0001869;2.09e-08;32!UBERON:0001950;2.27e-08;20!UBERON:0003528;3.96e-08;34!UBERON:0002020;3.96e-08;34!UBERON:0000955;1.57e-07;68 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,6.11e-13,22;UBERON:0000956,1.73e-11,25;UBERON:0000203,1.73e-11,25;UBERON:0001871,2.55e-11,6;UBERON:0002771,1.43e-10,2;UBERON:0001954,1.89e-10,2;UBERON:0003022,1.89e-10,2;UBERON:0002421,1.89e-10,2;UBERON:0002600,1.89e-10,2;UBERON:0000955,3.55e-09,68;UBERON:0006238,3.55e-09,68;UBERON:0002791,4.06e-09,32;UBERON:0001869,4.06e-09,32;UBERON:0003528,1.30e-08,34;UBERON:0002020,1.30e-08,34;UBERON:0001893,1.30e-08,34;UBERON:0000073,1.93e-08,53;UBERON:0002616,1.93e-08,53;UBERON:0001950,2.27e-08,20;UBERON:0001049,5.34e-08,56;UBERON:0005068,5.34e-08,56;UBERON:0006241,5.34e-08,56;UBERON:0007135,5.34e-08,56;UBERON:0001017,1.05e-07,81;UBERON:0002346,2.51e-07,86;UBERON:0002780,3.20e-07,41;UBERON:0001890,3.20e-07,41;UBERON:0003080,3.20e-07,41;UBERON:0006240,3.20e-07,41;UBERON:0001016,6.25e-07,89 | |||
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| ||
|short_description=p17@LINGO1 | |short_description=p17@LINGO1 | ||
}} | }} |
Latest revision as of 05:38, 19 September 2015
Short description: | p17@LINGO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_LINGO1_5end |
Coexpression cluster: | C2350_medial_brain_amygdala_hippocampus_neuroectodermal_occipital_small |
Association with transcript: | 170bp_to_AY324322_5end |
EntrezGene: | LINGO1 |
HGNC: | 21205 |
UniProt: | Q96FE5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.99e-10 | 2 |
light melanocyte | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 6.11e-13 | 22 |
cerebral cortex | 1.73e-11 | 25 |
pallium | 1.73e-11 | 25 |
temporal lobe | 2.55e-11 | 6 |
middle temporal gyrus | 1.43e-10 | 2 |
Ammon's horn | 1.89e-10 | 2 |
lobe parts of cerebral cortex | 1.89e-10 | 2 |
hippocampal formation | 1.89e-10 | 2 |
limbic lobe | 1.89e-10 | 2 |
brain | 3.55e-09 | 68 |
future brain | 3.55e-09 | 68 |
regional part of telencephalon | 4.06e-09 | 32 |
cerebral hemisphere | 4.06e-09 | 32 |
brain grey matter | 1.30e-08 | 34 |
gray matter | 1.30e-08 | 34 |
telencephalon | 1.30e-08 | 34 |
regional part of nervous system | 1.93e-08 | 53 |
regional part of brain | 1.93e-08 | 53 |
neocortex | 2.27e-08 | 20 |
neural tube | 5.34e-08 | 56 |
neural rod | 5.34e-08 | 56 |
future spinal cord | 5.34e-08 | 56 |
neural keel | 5.34e-08 | 56 |
central nervous system | 1.05e-07 | 81 |
neurectoderm | 2.51e-07 | 86 |
regional part of forebrain | 3.20e-07 | 41 |
forebrain | 3.20e-07 | 41 |
anterior neural tube | 3.20e-07 | 41 |
future forebrain | 3.20e-07 | 41 |
nervous system | 6.25e-07 | 89 |