FFCP PHASE1:Hg19::chr5:131892603..131892709,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10111 | |EntrezGene=10111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9816 | |HGNC=9816 | ||
|TSSclassifier=strong | |||
|UniProt=Q92878,E9PM98,A5D6Y3 | |UniProt=Q92878,E9PM98,A5D6Y3 | ||
|association_with_transcript=0bp_to_ENST00000265335,ENST00000378823,ENST00000533482,NM_005732,uc003kxh.2,uc003kxi.2_5end | |association_with_transcript=0bp_to_ENST00000265335,ENST00000378823,ENST00000533482,NM_005732,uc003kxh.2,uc003kxi.2_5end | ||
|cluster_id=chr5:131892603..131892709,+ | |||
|description=CAGE_peak_1_at_RAD50_5end | |description=CAGE_peak_1_at_RAD50_5end | ||
|id=chr5:131892603..131892709,+ | |id=chr5:131892603..131892709,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!7.01e-14!235;DOID:14566!9.93e-14!239;DOID:0050687!2.56e-10!143;DOID:0050686!7.40e-07!137 | |ontology_enrichment_disease=DOID:162!7.01e-14!235;DOID:14566!9.93e-14!239;DOID:0050687!2.56e-10!143;DOID:0050686!7.40e-07!137 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:162,7.01e-14,235;DOID:14566,9.93e-14,239;DOID:0050687,2.56e-10,143;DOID:0050686,7.40e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.14e-10!115;UBERON:0003080!9.37e-09!42;UBERON:0002780!2.12e-08!41;UBERON:0001890!2.12e-08!41;UBERON:0006240!2.12e-08!41;UBERON:0000924!7.80e-08!173;UBERON:0006601!7.80e-08!173;UBERON:0001049!9.07e-08!57;UBERON:0005068!9.07e-08!57;UBERON:0006241!9.07e-08!57;UBERON:0007135!9.07e-08!57;UBERON:0002020!1.43e-07!34;UBERON:0003528!1.43e-07!34;UBERON:0000073!2.55e-07!94;UBERON:0001016!2.55e-07!94;UBERON:0004121!3.25e-07!169;UBERON:0001869!4.79e-07!32;UBERON:0001893!5.12e-07!34;UBERON:0002791!5.27e-07!33;UBERON:0005409!7.29e-07!35 | |ontology_enrichment_uberon=UBERON:0007023!4.14e-10!115;UBERON:0003080!9.37e-09!42;UBERON:0002780!2.12e-08!41;UBERON:0001890!2.12e-08!41;UBERON:0006240!2.12e-08!41;UBERON:0000924!7.80e-08!173;UBERON:0006601!7.80e-08!173;UBERON:0001049!9.07e-08!57;UBERON:0005068!9.07e-08!57;UBERON:0006241!9.07e-08!57;UBERON:0007135!9.07e-08!57;UBERON:0002020!1.43e-07!34;UBERON:0003528!1.43e-07!34;UBERON:0000073!2.55e-07!94;UBERON:0001016!2.55e-07!94;UBERON:0004121!3.25e-07!169;UBERON:0001869!4.79e-07!32;UBERON:0001893!5.12e-07!34;UBERON:0002791!5.27e-07!33;UBERON:0005409!7.29e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0002791;8.30e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0002791;8.30e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.99e-10,114;UBERON:0011216,6.20e-09,223;UBERON:0002780,2.12e-08,41;UBERON:0001890,2.12e-08,41;UBERON:0003080,2.12e-08,41;UBERON:0006240,2.12e-08,41;UBERON:0001016,9.23e-08,89;UBERON:0003528,1.43e-07,34;UBERON:0002020,1.43e-07,34;UBERON:0001049,1.87e-07,56;UBERON:0005068,1.87e-07,56;UBERON:0006241,1.87e-07,56;UBERON:0007135,1.87e-07,56;UBERON:0002791,2.79e-07,32;UBERON:0000073,3.79e-07,53;UBERON:0002616,3.79e-07,53;UBERON:0001869,4.79e-07,32;UBERON:0001893,5.12e-07,34 | |||
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| ||
|short_description=p1@RAD50 | |short_description=p1@RAD50 | ||
}} | }} |
Latest revision as of 05:36, 20 September 2015
Short description: | p1@RAD50 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAD50_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000265335, ENST00000378823, ENST00000533482, NM_005732, uc003kxh.2, uc003kxi.2_5end |
EntrezGene: | RAD50 |
HGNC: | 9816 |
UniProt: | Q92878E9PM98A5D6Y3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 8.99e-10 | 114 |
organ system subdivision | 6.20e-09 | 223 |
regional part of forebrain | 2.12e-08 | 41 |
forebrain | 2.12e-08 | 41 |
anterior neural tube | 2.12e-08 | 41 |
future forebrain | 2.12e-08 | 41 |
nervous system | 9.23e-08 | 89 |
brain grey matter | 1.43e-07 | 34 |
gray matter | 1.43e-07 | 34 |
neural tube | 1.87e-07 | 56 |
neural rod | 1.87e-07 | 56 |
future spinal cord | 1.87e-07 | 56 |
neural keel | 1.87e-07 | 56 |
regional part of telencephalon | 2.79e-07 | 32 |
regional part of nervous system | 3.79e-07 | 53 |
regional part of brain | 3.79e-07 | 53 |
cerebral hemisphere | 4.79e-07 | 32 |
telencephalon | 5.12e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
cancer | 7.01e-14 | 235 |
disease of cellular proliferation | 9.93e-14 | 239 |
cell type cancer | 2.56e-10 | 143 |
organ system cancer | 7.40e-07 | 137 |