FFCP PHASE1:Hg19::chr7:11872060..11872076,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221981 | |EntrezGene=221981 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22207 | |HGNC=22207 | ||
|TSSclassifier=strong | |||
|UniProt=C9JL67,Q9UPZ6 | |UniProt=C9JL67,Q9UPZ6 | ||
|association_with_transcript=-236bp_to_ENST00000262042,ENST00000423059,NM_015204,uc003ssf.3_5end | |association_with_transcript=-236bp_to_ENST00000262042,ENST00000423059,NM_015204,uc003ssf.3_5end | ||
|cluster_id=chr7:11872060..11872076,- | |||
|description=CAGE_peak_5_at_THSD7A_5end | |description=CAGE_peak_5_at_THSD7A_5end | ||
|id=chr7:11872060..11872076,- | |id=chr7:11872060..11872076,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.48e-31!115;UBERON:0000073!2.03e-27!94;UBERON:0001016!2.03e-27!94;UBERON:0001017!1.59e-25!82;UBERON:0005743!6.08e-25!86;UBERON:0001049!3.56e-23!57;UBERON:0005068!3.56e-23!57;UBERON:0006241!3.56e-23!57;UBERON:0007135!3.56e-23!57;UBERON:0001869!1.91e-22!32;UBERON:0001893!3.62e-22!34;UBERON:0002616!4.63e-22!59;UBERON:0002780!8.33e-22!41;UBERON:0001890!8.33e-22!41;UBERON:0006240!8.33e-22!41;UBERON:0000955!1.20e-21!69;UBERON:0006238!1.20e-21!69;UBERON:0002791!4.31e-21!33;UBERON:0003080!4.70e-21!42;UBERON:0002020!1.72e-20!34;UBERON:0003528!1.72e-20!34;UBERON:0001950!1.59e-18!20;UBERON:0002619!2.84e-18!22;UBERON:0002346!5.69e-18!90;UBERON:0003075!1.64e-17!86;UBERON:0007284!1.64e-17!86;UBERON:0000956!6.21e-17!25;UBERON:0000203!6.21e-17!25;UBERON:0003056!2.04e-15!61;UBERON:0000924!2.97e-14!173;UBERON:0006601!2.97e-14!173;UBERON:0004121!9.74e-14!169;UBERON:0000153!2.00e-12!129;UBERON:0007811!2.00e-12!129;UBERON:0000033!3.08e-12!123;UBERON:0004111!2.70e-09!241;UBERON:0000477!3.03e-09!286;UBERON:0000025!1.04e-08!194;UBERON:0001872!2.08e-07!5;UBERON:0002420!3.44e-07!9;UBERON:0007245!3.44e-07!9;UBERON:0010009!3.44e-07!9;UBERON:0010011!3.44e-07!9;UBERON:0000454!3.44e-07!9;UBERON:0000062!3.91e-07!511;UBERON:0000468!6.67e-07!659 | |ontology_enrichment_uberon=UBERON:0007023!2.48e-31!115;UBERON:0000073!2.03e-27!94;UBERON:0001016!2.03e-27!94;UBERON:0001017!1.59e-25!82;UBERON:0005743!6.08e-25!86;UBERON:0001049!3.56e-23!57;UBERON:0005068!3.56e-23!57;UBERON:0006241!3.56e-23!57;UBERON:0007135!3.56e-23!57;UBERON:0001869!1.91e-22!32;UBERON:0001893!3.62e-22!34;UBERON:0002616!4.63e-22!59;UBERON:0002780!8.33e-22!41;UBERON:0001890!8.33e-22!41;UBERON:0006240!8.33e-22!41;UBERON:0000955!1.20e-21!69;UBERON:0006238!1.20e-21!69;UBERON:0002791!4.31e-21!33;UBERON:0003080!4.70e-21!42;UBERON:0002020!1.72e-20!34;UBERON:0003528!1.72e-20!34;UBERON:0001950!1.59e-18!20;UBERON:0002619!2.84e-18!22;UBERON:0002346!5.69e-18!90;UBERON:0003075!1.64e-17!86;UBERON:0007284!1.64e-17!86;UBERON:0000956!6.21e-17!25;UBERON:0000203!6.21e-17!25;UBERON:0003056!2.04e-15!61;UBERON:0000924!2.97e-14!173;UBERON:0006601!2.97e-14!173;UBERON:0004121!9.74e-14!169;UBERON:0000153!2.00e-12!129;UBERON:0007811!2.00e-12!129;UBERON:0000033!3.08e-12!123;UBERON:0004111!2.70e-09!241;UBERON:0000477!3.03e-09!286;UBERON:0000025!1.04e-08!194;UBERON:0001872!2.08e-07!5;UBERON:0002420!3.44e-07!9;UBERON:0007245!3.44e-07!9;UBERON:0010009!3.44e-07!9;UBERON:0010011!3.44e-07!9;UBERON:0000454!3.44e-07!9;UBERON:0000062!3.91e-07!511;UBERON:0000468!6.67e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;5.99e-18;20!UBERON:0002619;2.97e-16;22!UBERON:0002791;2.74e-15;32!UBERON:0001869;2.97e-15;32!UBERON:0000956;3.36e-14;25!UBERON:0000203;3.36e-14;25!UBERON:0003528;5.23e-13;34!UBERON:0002020;5.23e-13;34!UBERON:0002780;5.70e-13;41!UBERON:0001890;5.70e-13;41!UBERON:0001893;1.99e-12;34!UBERON:0000073;2.26e-09;53!UBERON:0002616;2.26e-09;53!UBERON:0001870;1.63e-07;3!UBERON:0005383;1.63e-07;3!UBERON:0005382;1.63e-07;3!UBERON:0000955;2.29e-07;68!UBERON:0001017;4.19e-07;75!UBERON:0001016;4.74e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0001950;5.99e-18;20!UBERON:0002619;2.97e-16;22!UBERON:0002791;2.74e-15;32!UBERON:0001869;2.97e-15;32!UBERON:0000956;3.36e-14;25!UBERON:0000203;3.36e-14;25!UBERON:0003528;5.23e-13;34!UBERON:0002020;5.23e-13;34!UBERON:0002780;5.70e-13;41!UBERON:0001890;5.70e-13;41!UBERON:0001893;1.99e-12;34!UBERON:0000073;2.26e-09;53!UBERON:0002616;2.26e-09;53!UBERON:0001870;1.63e-07;3!UBERON:0005383;1.63e-07;3!UBERON:0005382;1.63e-07;3!UBERON:0000955;2.29e-07;68!UBERON:0001017;4.19e-07;75!UBERON:0001016;4.74e-07;83 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,7.43e-18,20;UBERON:0002791,3.34e-16,32;UBERON:0001869,3.34e-16,32;UBERON:0002619,3.61e-16,22;UBERON:0003528,3.73e-15,34;UBERON:0002020,3.73e-15,34;UBERON:0001893,3.73e-15,34;UBERON:0002780,9.85e-15,41;UBERON:0001890,9.85e-15,41;UBERON:0003080,9.85e-15,41;UBERON:0006240,9.85e-15,41;UBERON:0000956,3.98e-14,25;UBERON:0000203,3.98e-14,25;UBERON:0001016,1.54e-13,89;UBERON:0000073,6.88e-13,53;UBERON:0002616,6.88e-13,53;UBERON:0001049,4.53e-12,56;UBERON:0005068,4.53e-12,56;UBERON:0006241,4.53e-12,56;UBERON:0007135,4.53e-12,56;UBERON:0001017,8.61e-12,81;UBERON:0000955,5.28e-11,68;UBERON:0006238,5.28e-11,68;UBERON:0003056,6.21e-11,61;UBERON:0003075,8.24e-09,82;UBERON:0007284,8.24e-09,82;UBERON:0002346,2.82e-08,86;UBERON:0005383,1.53e-07,3;UBERON:0005382,1.53e-07,3;UBERON:0001870,1.69e-07,3;UBERON:0010314,4.56e-07,132 | |||
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| ||
|short_description=p5@THSD7A | |short_description=p5@THSD7A | ||
}} | }} |
Latest revision as of 20:52, 15 September 2015
Short description: | p5@THSD7A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_THSD7A_5end |
Coexpression cluster: | NA |
Association with transcript: | -236bp_to_ENST00000262042, ENST00000423059, NM_015204, uc003ssf.3_5end |
EntrezGene: | THSD7A |
HGNC: | 22207 |
UniProt: | C9JL67Q9UPZ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 7.43e-18 | 20 |
regional part of telencephalon | 3.34e-16 | 32 |
cerebral hemisphere | 3.34e-16 | 32 |
regional part of cerebral cortex | 3.61e-16 | 22 |
brain grey matter | 3.73e-15 | 34 |
gray matter | 3.73e-15 | 34 |
telencephalon | 3.73e-15 | 34 |
regional part of forebrain | 9.85e-15 | 41 |
forebrain | 9.85e-15 | 41 |
anterior neural tube | 9.85e-15 | 41 |
future forebrain | 9.85e-15 | 41 |
cerebral cortex | 3.98e-14 | 25 |
pallium | 3.98e-14 | 25 |
nervous system | 1.54e-13 | 89 |
regional part of nervous system | 6.88e-13 | 53 |
regional part of brain | 6.88e-13 | 53 |
neural tube | 4.53e-12 | 56 |
neural rod | 4.53e-12 | 56 |
future spinal cord | 4.53e-12 | 56 |
neural keel | 4.53e-12 | 56 |
central nervous system | 8.61e-12 | 81 |
brain | 5.28e-11 | 68 |
future brain | 5.28e-11 | 68 |
pre-chordal neural plate | 6.21e-11 | 61 |
neural plate | 8.24e-09 | 82 |
presumptive neural plate | 8.24e-09 | 82 |
neurectoderm | 2.82e-08 | 86 |
caudate-putamen | 1.53e-07 | 3 |
dorsal striatum | 1.53e-07 | 3 |
frontal cortex | 1.69e-07 | 3 |
structure with developmental contribution from neural crest | 4.56e-07 | 132 |