FFCP PHASE1:Hg19::chr6:123110389..123110441,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10924 | |EntrezGene=10924 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17389 | |HGNC=17389 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000487215_5end | |association_with_transcript=0bp_to_ENST00000487215_5end | ||
|cluster_id=chr6:123110389..123110441,+ | |||
|coexpression_cluster_id=C2841 | |coexpression_cluster_id=C2841 | ||
|description=CAGE_peak_1_at_SMPDL3A_5end | |description=CAGE_peak_1_at_SMPDL3A_5end | ||
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|ontology_enrichment_celltype=CL:0002057!3.96e-24!42;CL:0000860!6.02e-23!45;CL:0002194!2.89e-21!63;CL:0000576!2.89e-21!63;CL:0000040!2.89e-21!63;CL:0000559!2.89e-21!63;CL:0002009!4.03e-21!65;CL:0000766!4.32e-20!76;CL:0000557!9.24e-20!71;CL:0000839!6.88e-19!70 | |ontology_enrichment_celltype=CL:0002057!3.96e-24!42;CL:0000860!6.02e-23!45;CL:0002194!2.89e-21!63;CL:0000576!2.89e-21!63;CL:0000040!2.89e-21!63;CL:0000559!2.89e-21!63;CL:0002009!4.03e-21!65;CL:0000766!4.32e-20!76;CL:0000557!9.24e-20!71;CL:0000839!6.88e-19!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.40e-17;33!CL:0002057;1.40e-17;33!CL:0000576;2.87e-15;48!CL:0000473;3.63e-15;39!CL:0000234;3.63e-15;39!CL:0000766;1.54e-11;69 | |ontology_enrichment_celltype_v019=CL:0000860;1.40e-17;33!CL:0002057;1.40e-17;33!CL:0000576;2.87e-15;48!CL:0000473;3.63e-15;39!CL:0000234;3.63e-15;39!CL:0000766;1.54e-11;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.47e-24,48;CL:0000234,1.47e-24,48;CL:0000860,3.86e-24,42;CL:0002057,3.86e-24,42;CL:0002194,6.22e-22,59;CL:0000576,6.22e-22,59;CL:0000040,6.22e-22,59;CL:0000559,6.22e-22,59;CL:0002009,9.50e-22,61;CL:0000766,1.56e-20,72;CL:0000557,2.79e-20,67;CL:0000839,2.40e-19,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.22e-17;42 | |ontology_enrichment_development_v019=CL:0002057;1.22e-17;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.04e-25!659;UBERON:0000062!1.09e-22!511;UBERON:0000467!1.42e-20!625;UBERON:0000480!2.92e-20!626;UBERON:0002050!1.03e-18!605;UBERON:0005423!1.03e-18!605;UBERON:0000923!2.13e-18!604;UBERON:0005291!2.13e-18!604;UBERON:0006598!2.13e-18!604;UBERON:0002532!2.13e-18!604;UBERON:0000922!1.06e-17!612;UBERON:0002371!1.65e-16!80;UBERON:0001474!4.67e-15!86;UBERON:0002405!3.53e-14!115;UBERON:0002390!5.28e-14!102;UBERON:0003061!5.28e-14!102;UBERON:0004765!1.21e-13!101;UBERON:0001434!1.21e-13!101;UBERON:0002193!5.60e-13!112;UBERON:0007023!6.66e-13!115;UBERON:0002204!8.02e-13!167;UBERON:0000926!7.45e-11!448;UBERON:0004120!7.45e-11!448;UBERON:0006603!7.45e-11!448 | |ontology_enrichment_uberon=UBERON:0000468!2.04e-25!659;UBERON:0000062!1.09e-22!511;UBERON:0000467!1.42e-20!625;UBERON:0000480!2.92e-20!626;UBERON:0002050!1.03e-18!605;UBERON:0005423!1.03e-18!605;UBERON:0000923!2.13e-18!604;UBERON:0005291!2.13e-18!604;UBERON:0006598!2.13e-18!604;UBERON:0002532!2.13e-18!604;UBERON:0000922!1.06e-17!612;UBERON:0002371!1.65e-16!80;UBERON:0001474!4.67e-15!86;UBERON:0002405!3.53e-14!115;UBERON:0002390!5.28e-14!102;UBERON:0003061!5.28e-14!102;UBERON:0004765!1.21e-13!101;UBERON:0001434!1.21e-13!101;UBERON:0002193!5.60e-13!112;UBERON:0007023!6.66e-13!115;UBERON:0002204!8.02e-13!167;UBERON:0000926!7.45e-11!448;UBERON:0004120!7.45e-11!448;UBERON:0006603!7.45e-11!448 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002050,1.14e-19,564;UBERON:0000923,1.45e-19,560;UBERON:0010316,1.45e-19,560;UBERON:0005291,1.45e-19,560;UBERON:0006598,1.45e-19,560;UBERON:0010317,1.45e-19,560;UBERON:0002532,1.45e-19,560;UBERON:0005423,1.30e-17,581;UBERON:0002371,8.62e-17,76;UBERON:0000922,6.85e-16,592;UBERON:0001474,2.95e-15,82;UBERON:0004765,9.88e-15,90;UBERON:0002390,3.56e-14,98;UBERON:0003061,3.56e-14,98;UBERON:0001434,4.63e-14,100;UBERON:0002405,1.42e-13,93;UBERON:0002204,1.74e-13,167;UBERON:0002193,4.30e-13,108;UBERON:0007023,8.91e-13,114;UBERON:0000926,1.23e-10,315;UBERON:0004120,1.23e-10,315;UBERON:0006603,1.23e-10,315;UBERON:0011216,9.63e-07,223 | |||
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| ||
|short_description=p1@SMPDL3A | |short_description=p1@SMPDL3A | ||
}} | }} |
Latest revision as of 05:15, 20 September 2015
Short description: | p1@SMPDL3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMPDL3A_5end |
Coexpression cluster: | C2841_sacrococcigeal_CD14_Smooth_colon_Prostate_anaplastic_tridermal |
Association with transcript: | 0bp_to_ENST00000487215_5end |
EntrezGene: | SMPDL3A |
HGNC: | 17389 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.47e-24 | 48 |
phagocyte | 1.47e-24 | 48 |
classical monocyte | 3.86e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.86e-24 | 42 |
monopoietic cell | 6.22e-22 | 59 |
monocyte | 6.22e-22 | 59 |
monoblast | 6.22e-22 | 59 |
promonocyte | 6.22e-22 | 59 |
macrophage dendritic cell progenitor | 9.50e-22 | 61 |
myeloid leukocyte | 1.56e-20 | 72 |
granulocyte monocyte progenitor cell | 2.79e-20 | 67 |
myeloid lineage restricted progenitor cell | 2.40e-19 | 66 |
Ontology term | p-value | n |
---|---|---|
embryonic structure | 1.14e-19 | 564 |
germ layer | 1.45e-19 | 560 |
germ layer / neural crest | 1.45e-19 | 560 |
embryonic tissue | 1.45e-19 | 560 |
presumptive structure | 1.45e-19 | 560 |
germ layer / neural crest derived structure | 1.45e-19 | 560 |
epiblast (generic) | 1.45e-19 | 560 |
developing anatomical structure | 1.30e-17 | 581 |
bone marrow | 8.62e-17 | 76 |
embryo | 6.85e-16 | 592 |
bone element | 2.95e-15 | 82 |
skeletal element | 9.88e-15 | 90 |
hematopoietic system | 3.56e-14 | 98 |
blood island | 3.56e-14 | 98 |
skeletal system | 4.63e-14 | 100 |
immune system | 1.42e-13 | 93 |
musculoskeletal system | 1.74e-13 | 167 |
hemolymphoid system | 4.30e-13 | 108 |
adult organism | 8.91e-13 | 114 |
mesoderm | 1.23e-10 | 315 |
mesoderm-derived structure | 1.23e-10 | 315 |
presumptive mesoderm | 1.23e-10 | 315 |
organ system subdivision | 9.63e-07 | 223 |