FFCP PHASE1:Hg19::chrX:110385395..110385402,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5063 | |EntrezGene=5063 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8592 | |HGNC=8592 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=24bp_to_ENST00000487802_5end | |association_with_transcript=24bp_to_ENST00000487802_5end | ||
|cluster_id=chrX:110385395..110385402,+ | |||
|coexpression_cluster_id=C16 | |coexpression_cluster_id=C16 | ||
|description=CAGE_peak_12_at_PAK3_5end | |description=CAGE_peak_12_at_PAK3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006222;1.81e-40;1!UBERON:0006238;2.17e-15;10 | |ontology_enrichment_development_v019=UBERON:0006222;1.81e-40;1!UBERON:0006238;2.17e-15;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.26e-66!57;UBERON:0005068!1.26e-66!57;UBERON:0006241!1.26e-66!57;UBERON:0007135!1.26e-66!57;UBERON:0002780!7.05e-62!41;UBERON:0001890!7.05e-62!41;UBERON:0006240!7.05e-62!41;UBERON:0003080!3.03e-60!42;UBERON:0001017!8.54e-58!82;UBERON:0002616!1.33e-56!59;UBERON:0005743!1.13e-54!86;UBERON:0000955!6.92e-53!69;UBERON:0006238!6.92e-53!69;UBERON:0002346!1.07e-51!90;UBERON:0003075!4.53e-49!86;UBERON:0007284!4.53e-49!86;UBERON:0000073!1.37e-48!94;UBERON:0001016!1.37e-48!94;UBERON:0001893!7.05e-47!34;UBERON:0002020!7.20e-47!34;UBERON:0003528!7.20e-47!34;UBERON:0001869!7.24e-46!32;UBERON:0002791!2.55e-44!33;UBERON:0007023!2.83e-43!115;UBERON:0003056!4.47e-42!61;UBERON:0002619!1.89e-36!22;UBERON:0000956!1.02e-31!25;UBERON:0000203!1.02e-31!25;UBERON:0001950!1.08e-30!20;UBERON:0000033!2.27e-29!123;UBERON:0000153!1.46e-27!129;UBERON:0007811!1.46e-27!129;UBERON:0000924!1.48e-27!173;UBERON:0006601!1.48e-27!173;UBERON:0004121!1.61e-25!169;UBERON:0000025!1.85e-18!194;UBERON:0001894!1.09e-16!7;UBERON:0006222!1.09e-16!7;UBERON:0002308!1.12e-16!9;UBERON:0000125!1.12e-16!9;UBERON:0001871!2.76e-14!7;UBERON:0000369!1.10e-13!4;UBERON:0002435!1.10e-13!4;UBERON:0000204!1.10e-13!4;UBERON:0010082!1.10e-13!4;UBERON:0000200!1.14e-13!6;UBERON:0004111!7.03e-13!241;UBERON:0002420!1.62e-12!9;UBERON:0007245!1.62e-12!9;UBERON:0010009!1.62e-12!9;UBERON:0010011!1.62e-12!9;UBERON:0000454!1.62e-12!9;UBERON:0000477!1.25e-11!286;UBERON:0009663!1.66e-11!7;UBERON:0000483!2.09e-11!309;UBERON:0000119!3.43e-11!312;UBERON:0005383!3.52e-11!3;UBERON:0005382!3.52e-11!3;UBERON:0002771!4.59e-11!3;UBERON:0000349!9.00e-11!5;UBERON:0001872!3.45e-10!5;UBERON:0000988!6.57e-10!3;UBERON:0002298!3.41e-09!8;UBERON:0003076!3.68e-09!15;UBERON:0003057!3.68e-09!15;UBERON:0001873!4.76e-08!2;UBERON:0001954!4.76e-08!2;UBERON:0003022!4.76e-08!2;UBERON:0002421!4.76e-08!2;UBERON:0002600!4.76e-08!2;UBERON:0010122!4.76e-08!2;UBERON:0000064!5.45e-08!219;UBERON:0003296!5.48e-08!4;UBERON:0010133!5.48e-08!4;UBERON:0000007!1.13e-07!2;UBERON:0001897!1.51e-07!2;UBERON:0002148!3.36e-07!2;UBERON:0009662!3.36e-07!2;UBERON:0000481!4.65e-07!347;UBERON:0000475!6.98e-07!365 | |ontology_enrichment_uberon=UBERON:0001049!1.26e-66!57;UBERON:0005068!1.26e-66!57;UBERON:0006241!1.26e-66!57;UBERON:0007135!1.26e-66!57;UBERON:0002780!7.05e-62!41;UBERON:0001890!7.05e-62!41;UBERON:0006240!7.05e-62!41;UBERON:0003080!3.03e-60!42;UBERON:0001017!8.54e-58!82;UBERON:0002616!1.33e-56!59;UBERON:0005743!1.13e-54!86;UBERON:0000955!6.92e-53!69;UBERON:0006238!6.92e-53!69;UBERON:0002346!1.07e-51!90;UBERON:0003075!4.53e-49!86;UBERON:0007284!4.53e-49!86;UBERON:0000073!1.37e-48!94;UBERON:0001016!1.37e-48!94;UBERON:0001893!7.05e-47!34;UBERON:0002020!7.20e-47!34;UBERON:0003528!7.20e-47!34;UBERON:0001869!7.24e-46!32;UBERON:0002791!2.55e-44!33;UBERON:0007023!2.83e-43!115;UBERON:0003056!4.47e-42!61;UBERON:0002619!1.89e-36!22;UBERON:0000956!1.02e-31!25;UBERON:0000203!1.02e-31!25;UBERON:0001950!1.08e-30!20;UBERON:0000033!2.27e-29!123;UBERON:0000153!1.46e-27!129;UBERON:0007811!1.46e-27!129;UBERON:0000924!1.48e-27!173;UBERON:0006601!1.48e-27!173;UBERON:0004121!1.61e-25!169;UBERON:0000025!1.85e-18!194;UBERON:0001894!1.09e-16!7;UBERON:0006222!1.09e-16!7;UBERON:0002308!1.12e-16!9;UBERON:0000125!1.12e-16!9;UBERON:0001871!2.76e-14!7;UBERON:0000369!1.10e-13!4;UBERON:0002435!1.10e-13!4;UBERON:0000204!1.10e-13!4;UBERON:0010082!1.10e-13!4;UBERON:0000200!1.14e-13!6;UBERON:0004111!7.03e-13!241;UBERON:0002420!1.62e-12!9;UBERON:0007245!1.62e-12!9;UBERON:0010009!1.62e-12!9;UBERON:0010011!1.62e-12!9;UBERON:0000454!1.62e-12!9;UBERON:0000477!1.25e-11!286;UBERON:0009663!1.66e-11!7;UBERON:0000483!2.09e-11!309;UBERON:0000119!3.43e-11!312;UBERON:0005383!3.52e-11!3;UBERON:0005382!3.52e-11!3;UBERON:0002771!4.59e-11!3;UBERON:0000349!9.00e-11!5;UBERON:0001872!3.45e-10!5;UBERON:0000988!6.57e-10!3;UBERON:0002298!3.41e-09!8;UBERON:0003076!3.68e-09!15;UBERON:0003057!3.68e-09!15;UBERON:0001873!4.76e-08!2;UBERON:0001954!4.76e-08!2;UBERON:0003022!4.76e-08!2;UBERON:0002421!4.76e-08!2;UBERON:0002600!4.76e-08!2;UBERON:0010122!4.76e-08!2;UBERON:0000064!5.45e-08!219;UBERON:0003296!5.48e-08!4;UBERON:0010133!5.48e-08!4;UBERON:0000007!1.13e-07!2;UBERON:0001897!1.51e-07!2;UBERON:0002148!3.36e-07!2;UBERON:0009662!3.36e-07!2;UBERON:0000481!4.65e-07!347;UBERON:0000475!6.98e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0002771;3.11e-21;2!UBERON:0001954;5.15e-21;2!UBERON:0003022;5.15e-21;2!UBERON:0002421;5.15e-21;2!UBERON:0002600;5.15e-21;2!UBERON:0000955;1.99e-11;68!UBERON:0001017;2.95e-09;75!UBERON:0000349;3.10e-09;5!UBERON:0000200;5.54e-08;6!UBERON:0002619;6.19e-08;22!UBERON:0000956;3.96e-07;25!UBERON:0000203;3.96e-07;25!UBERON:0001871;5.08e-07;6!UBERON:0001894;5.86e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0002771;3.11e-21;2!UBERON:0001954;5.15e-21;2!UBERON:0003022;5.15e-21;2!UBERON:0002421;5.15e-21;2!UBERON:0002600;5.15e-21;2!UBERON:0000955;1.99e-11;68!UBERON:0001017;2.95e-09;75!UBERON:0000349;3.10e-09;5!UBERON:0000200;5.54e-08;6!UBERON:0002619;6.19e-08;22!UBERON:0000956;3.96e-07;25!UBERON:0000203;3.96e-07;25!UBERON:0001871;5.08e-07;6!UBERON:0001894;5.86e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,3.11e-21,2;UBERON:0001954,4.66e-21,2;UBERON:0003022,4.66e-21,2;UBERON:0002421,4.66e-21,2;UBERON:0002600,4.66e-21,2;UBERON:0000955,9.02e-15,68;UBERON:0006238,9.02e-15,68;UBERON:0001017,1.45e-12,81;UBERON:0001016,2.13e-11,89;UBERON:0007023,2.58e-09,114;UBERON:0002780,2.59e-09,41;UBERON:0001890,2.59e-09,41;UBERON:0003080,2.59e-09,41;UBERON:0006240,2.59e-09,41;UBERON:0000349,2.97e-09,5;UBERON:0000200,5.54e-08,6;UBERON:0002619,6.08e-08,22;UBERON:0000073,2.08e-07,53;UBERON:0002616,2.08e-07,53;UBERON:0000956,3.90e-07,25;UBERON:0000203,3.90e-07,25;UBERON:0001049,4.68e-07,56;UBERON:0005068,4.68e-07,56;UBERON:0006241,4.68e-07,56;UBERON:0007135,4.68e-07,56;UBERON:0001871,5.08e-07,6;UBERON:0001894,6.04e-07,7;UBERON:0006222,6.04e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,1.02044907978036,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.964771509003264,0,0,0,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,1.40558667435203,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0.379864775735272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0.681017030557878,0,0,0,0,0,0.303747783290123,0,0.0788057072991982,0,0,0.896436696664224,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.27091927156871,0.625954653532499,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0.128458450192919,0,0.478901577171454,0,0.504143392443436,0.138314504928436,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.19024743058172,0.546974809018219,0,0,0,0,0,0.336283722218824,0.606965604236632,0.455324382702595,0,0,0,0.203909198930495,0.197318320688547,0,0,0,0.785577949580009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588925401344836,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.803892390468535,0.829169439458779,0.20686599172379,0,0,0,0,0,0.381882949668989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,1.02044907978036,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.964771509003264,0,0,0,0.658156191461918,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,1.40558667435203,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0.379864775735272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0.681017030557878,0,0,0,0,0,0.303747783290123,0,0.0788057072991982,0,0,0.896436696664224,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.27091927156871,0.625954653532499,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0.128458450192919,0,0.478901577171454,0,0.504143392443436,0.138314504928436,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.19024743058172,0.546974809018219,0,0,0,0,0,0.336283722218824,0.606965604236632,0.455324382702595,0,0,0,0.203909198930495,0.197318320688547,0,0,0,0.785577949580009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588925401344836,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.803892390468535,0.829169439458779,0.20686599172379,0,0,0,0,0,0.381882949668989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p12@PAK3 | |short_description=p12@PAK3 | ||
}} | }} |
Latest revision as of 01:23, 19 September 2015
Short description: | p12@PAK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_PAK3_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 24bp_to_ENST00000487802_5end |
EntrezGene: | PAK3 |
HGNC: | 8592 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 3.11e-21 | 2 |
Ammon's horn | 4.66e-21 | 2 |
lobe parts of cerebral cortex | 4.66e-21 | 2 |
hippocampal formation | 4.66e-21 | 2 |
limbic lobe | 4.66e-21 | 2 |
brain | 9.02e-15 | 68 |
future brain | 9.02e-15 | 68 |
central nervous system | 1.45e-12 | 81 |
nervous system | 2.13e-11 | 89 |
adult organism | 2.58e-09 | 114 |
regional part of forebrain | 2.59e-09 | 41 |
forebrain | 2.59e-09 | 41 |
anterior neural tube | 2.59e-09 | 41 |
future forebrain | 2.59e-09 | 41 |
limbic system | 2.97e-09 | 5 |
gyrus | 5.54e-08 | 6 |
regional part of cerebral cortex | 6.08e-08 | 22 |
regional part of nervous system | 2.08e-07 | 53 |
regional part of brain | 2.08e-07 | 53 |
cerebral cortex | 3.90e-07 | 25 |
pallium | 3.90e-07 | 25 |
neural tube | 4.68e-07 | 56 |
neural rod | 4.68e-07 | 56 |
future spinal cord | 4.68e-07 | 56 |
neural keel | 4.68e-07 | 56 |
temporal lobe | 5.08e-07 | 6 |
diencephalon | 6.04e-07 | 7 |
future diencephalon | 6.04e-07 | 7 |