FFCP PHASE1:Hg19::chr19:18508474..18508483,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126364 | |EntrezGene=126364 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29806 | |HGNC=29806 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-53bp_to_uc002nix.2_5end | |association_with_transcript=-53bp_to_uc002nix.2_5end | ||
|cluster_id=chr19:18508474..18508483,- | |||
|coexpression_cluster_id=C719 | |coexpression_cluster_id=C719 | ||
|description=CAGE_peak_2_at_LRRC25_5end | |description=CAGE_peak_2_at_LRRC25_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000766!5.09e-72!76;CL:0002194!6.90e-70!63;CL:0000576!6.90e-70!63;CL:0000040!6.90e-70!63;CL:0000559!6.90e-70!63;CL:0002057!4.19e-69!42;CL:0002009!2.90e-67!65;CL:0000860!1.38e-63!45;CL:0000839!2.36e-61!70;CL:0000557!2.85e-60!71;CL:0000738!1.68e-49!140;CL:0002087!3.76e-47!119;CL:0000763!4.21e-45!112;CL:0000049!4.21e-45!112;CL:0002031!1.51e-39!124;CL:0000037!5.85e-38!172;CL:0000566!5.85e-38!172;CL:0000988!4.27e-36!182;CL:0002032!7.38e-35!165;CL:0000837!7.38e-35!165;CL:0002393!7.55e-14!9;CL:0002397!7.55e-14!9;CL:0000134!4.59e-13!358;CL:0002320!1.95e-12!365;CL:0000219!2.94e-11!390;CL:0000094!4.53e-09!8;CL:0000034!1.23e-08!444;CL:0000048!1.38e-08!430;CL:0000723!3.30e-08!436;CL:0000875!1.29e-07!3;CL:0002396!1.29e-07!3;CL:0000775!2.61e-07!3;CL:0000235!6.38e-07!10;CL:0000767!8.93e-07!3 | |ontology_enrichment_celltype=CL:0000766!5.09e-72!76;CL:0002194!6.90e-70!63;CL:0000576!6.90e-70!63;CL:0000040!6.90e-70!63;CL:0000559!6.90e-70!63;CL:0002057!4.19e-69!42;CL:0002009!2.90e-67!65;CL:0000860!1.38e-63!45;CL:0000839!2.36e-61!70;CL:0000557!2.85e-60!71;CL:0000738!1.68e-49!140;CL:0002087!3.76e-47!119;CL:0000763!4.21e-45!112;CL:0000049!4.21e-45!112;CL:0002031!1.51e-39!124;CL:0000037!5.85e-38!172;CL:0000566!5.85e-38!172;CL:0000988!4.27e-36!182;CL:0002032!7.38e-35!165;CL:0000837!7.38e-35!165;CL:0002393!7.55e-14!9;CL:0002397!7.55e-14!9;CL:0000134!4.59e-13!358;CL:0002320!1.95e-12!365;CL:0000219!2.94e-11!390;CL:0000094!4.53e-09!8;CL:0000034!1.23e-08!444;CL:0000048!1.38e-08!430;CL:0000723!3.30e-08!436;CL:0000875!1.29e-07!3;CL:0002396!1.29e-07!3;CL:0000775!2.61e-07!3;CL:0000235!6.38e-07!10;CL:0000767!8.93e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.87e-60;33!CL:0002057;5.87e-60;33!CL:0000473;4.89e-55;39!CL:0000234;4.89e-55;39!CL:0000576;5.66e-46;48!CL:0000766;1.36e-43;69!CL:0000875;3.70e-17;3!CL:0002396;3.70e-17;3!CL:0000763;7.37e-17;100!CL:0000775;2.69e-16;3!CL:0000094;7.14e-16;8!CL:0000081;1.74e-11;11!CL:0002087;2.30e-10;104!CL:0000738;6.30e-10;136!CL:0000235;6.29e-09;6!CL:0002393;3.26e-08;6!CL:0002397;3.26e-08;6!CL:0000767;1.36e-07;3!CL:0000988;8.08e-07;177 | |ontology_enrichment_celltype_v019=CL:0000860;5.87e-60;33!CL:0002057;5.87e-60;33!CL:0000473;4.89e-55;39!CL:0000234;4.89e-55;39!CL:0000576;5.66e-46;48!CL:0000766;1.36e-43;69!CL:0000875;3.70e-17;3!CL:0002396;3.70e-17;3!CL:0000763;7.37e-17;100!CL:0000775;2.69e-16;3!CL:0000094;7.14e-16;8!CL:0000081;1.74e-11;11!CL:0002087;2.30e-10;104!CL:0000738;6.30e-10;136!CL:0000235;6.29e-09;6!CL:0002393;3.26e-08;6!CL:0002397;3.26e-08;6!CL:0000767;1.36e-07;3!CL:0000988;8.08e-07;177 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.46e-91,48;CL:0000234,1.46e-91,48;CL:0000860,5.22e-84,42;CL:0002057,5.22e-84,42;CL:0000766,1.18e-80,72;CL:0002194,5.09e-72,59;CL:0000576,5.09e-72,59;CL:0000040,5.09e-72,59;CL:0000559,5.09e-72,59;CL:0002009,1.69e-69,61;CL:0000839,7.54e-64,66;CL:0000557,8.08e-63,67;CL:0000763,7.91e-52,108;CL:0000049,7.91e-52,108;CL:0000738,1.82e-42,136;CL:0002087,8.03e-37,115;CL:0002031,4.91e-35,120;CL:0002032,7.28e-35,161;CL:0000837,7.28e-35,161;CL:0000037,3.88e-33,168;CL:0000988,4.08e-31,177;CL:0002393,6.62e-21,9;CL:0002397,6.62e-21,9;CL:0000875,2.92e-17,3;CL:0002396,2.92e-17,3;CL:0000775,1.78e-16,3;CL:0000094,6.72e-16,8;CL:0000134,4.07e-12,354;CL:0002320,9.58e-12,361;CL:0000081,1.67e-11,11;CL:0000219,1.96e-10,386;CL:0000235,6.30e-09,6;CL:0000048,7.92e-09,427;CL:0000723,1.32e-08,433;CL:0000034,2.56e-08,441;CL:0000767,1.67e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;5.78e-63;42!CL:0000049;5.32e-19;108 | |ontology_enrichment_development_v019=CL:0002057;5.78e-63;42!CL:0000049;5.32e-19;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.94e-70!102;UBERON:0003061!1.94e-70!102;UBERON:0002193!1.92e-64!112;UBERON:0002371!5.59e-59!80;UBERON:0001474!1.02e-53!86;UBERON:0002405!5.39e-48!115;UBERON:0004765!2.64e-43!101;UBERON:0001434!2.64e-43!101;UBERON:0003081!4.76e-27!216;UBERON:0002204!7.97e-23!167;UBERON:0002384!3.92e-12!375;UBERON:0000178!1.66e-10!15;UBERON:0000179!1.66e-10!15;UBERON:0000463!1.66e-10!15;UBERON:0000926!4.22e-10!448;UBERON:0004120!4.22e-10!448;UBERON:0006603!4.22e-10!448 | |ontology_enrichment_uberon=UBERON:0002390!1.94e-70!102;UBERON:0003061!1.94e-70!102;UBERON:0002193!1.92e-64!112;UBERON:0002371!5.59e-59!80;UBERON:0001474!1.02e-53!86;UBERON:0002405!5.39e-48!115;UBERON:0004765!2.64e-43!101;UBERON:0001434!2.64e-43!101;UBERON:0003081!4.76e-27!216;UBERON:0002204!7.97e-23!167;UBERON:0002384!3.92e-12!375;UBERON:0000178!1.66e-10!15;UBERON:0000179!1.66e-10!15;UBERON:0000463!1.66e-10!15;UBERON:0000926!4.22e-10!448;UBERON:0004120!4.22e-10!448;UBERON:0006603!4.22e-10!448 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.08e-58,76;UBERON:0002390,4.22e-54,98;UBERON:0003061,4.22e-54,98;UBERON:0001474,5.42e-54,82;UBERON:0002405,2.72e-50,93;UBERON:0004765,1.09e-48,90;UBERON:0002193,1.57e-48,108;UBERON:0001434,3.08e-43,100;UBERON:0002204,1.96e-23,167;UBERON:0003081,8.30e-23,203;UBERON:0000926,2.69e-12,315;UBERON:0004120,2.69e-12,315;UBERON:0006603,2.69e-12,315;UBERON:0002384,3.08e-11,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.157421562627358,0.786728553697808,1.15148819429164,1.23852898652861,0,0,0,0,0.426507697462265,0,0,0.401088894940283,0.217010870715852,0,0.32389366601898,0.515151135268373,3.05336301437086,2.26725566213286,2.42584061187816,2.78914844286822,2.05583944010913,1.23882548358041,1.1507695692886,2.0492856522328,1.18241114944293,2.06847408441971,0.645484683583826,4.06279459783025,1.69418105588344,0.818718450173537,1.12361742222542,0.918251677112708,1.28371610830437,0.639337125799041,2.96866170168044,2.39356389145958,2.55734850319616,0.580418477257168,1.70215567407342,0,1.00499466102697,0.521482918420201,0.868755378820466,0.605399502633369,0.736555271975129,0.632924774881769,1.90129757680748,2.55125159958052,1.25795187305026,1.12328631146495,1.05123824989054,0.803627933485401,5.13022938734247,4.17725022118089,2.92262646023414,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0.715471872916026,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0.738651018262192,0.234004265139238,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,6.08118903205952,4.01805673145701,4.21667878966063,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,2.24702107184155,2.99161459204025,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.238231775457789,0.411362273086194,0.648473311192717,1.62009431171434,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0.889811221596536,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54993481694734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69171052363736,0.709036767709349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.157421562627358,0.786728553697808,1.15148819429164,1.23852898652861,0,0,0,0,0.426507697462265,0,0,0.401088894940283,0.217010870715852,0,0.32389366601898,0.515151135268373,3.05336301437086,2.26725566213286,2.42584061187816,2.78914844286822,2.05583944010913,1.23882548358041,1.1507695692886,2.0492856522328,1.18241114944293,2.06847408441971,0.645484683583826,4.06279459783025,1.69418105588344,0.818718450173537,1.12361742222542,0.918251677112708,1.28371610830437,0.639337125799041,2.96866170168044,2.39356389145958,2.55734850319616,0.580418477257168,1.70215567407342,0,1.00499466102697,0.521482918420201,0.868755378820466,0.605399502633369,0.736555271975129,0.632924774881769,1.90129757680748,2.55125159958052,1.25795187305026,1.12328631146495,1.05123824989054,0.803627933485401,5.13022938734247,4.17725022118089,2.92262646023414,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.132957960518865,0.715471872916026,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0.738651018262192,0.234004265139238,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,6.08118903205952,4.01805673145701,4.21667878966063,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,2.24702107184155,2.99161459204025,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.238231775457789,0.411362273086194,0.648473311192717,1.62009431171434,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0.492339221844278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0.889811221596536,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54993481694734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69171052363736,0.709036767709349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p2@LRRC25 | |short_description=p2@LRRC25 | ||
}} | }} |
Latest revision as of 15:58, 16 September 2015
Short description: | p2@LRRC25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRC25_5end |
Coexpression cluster: | C719_Neutrophils_CD14CD16_CD14_blood_Eosinophils_Peripheral_Monocytederived |
Association with transcript: | -53bp_to_uc002nix.2_5end |
EntrezGene: | LRRC25 |
HGNC: | 29806 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.08e-58 | 76 |
hematopoietic system | 4.22e-54 | 98 |
blood island | 4.22e-54 | 98 |
bone element | 5.42e-54 | 82 |
immune system | 2.72e-50 | 93 |
skeletal element | 1.09e-48 | 90 |
hemolymphoid system | 1.57e-48 | 108 |
skeletal system | 3.08e-43 | 100 |
musculoskeletal system | 1.96e-23 | 167 |
lateral plate mesoderm | 8.30e-23 | 203 |
mesoderm | 2.69e-12 | 315 |
mesoderm-derived structure | 2.69e-12 | 315 |
presumptive mesoderm | 2.69e-12 | 315 |
connective tissue | 3.08e-11 | 371 |